Array 1 284-11 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYOD01000129.1 Salmonella enterica strain BCW_4916 NODE_129_length_310_cov_0.209302, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 283 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 222 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 161 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 100 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 39 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGCTATTGCGGTAGCATACTGACTCT # Right flank : GCCATGCTCCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 230-18 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYOD01000152.1 Salmonella enterica strain BCW_4916 NODE_152_length_274_cov_0.223464, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 229 29 100.0 32 ............................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 168 29 100.0 32 ............................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 107 29 100.0 32 ............................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 46 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGTGCCAGCGGGGATAAACCG # Left flank : TCATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAG # Right flank : GTCAAACGGTTCTGGAAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 109465-107968 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYOD01000001.1 Salmonella enterica strain BCW_4916 NODE_1_length_557952_cov_2.3657, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 109464 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 109403 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 109342 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 109281 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 109220 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 109159 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 109098 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 109037 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 108976 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 108914 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 108852 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 108791 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 108730 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 108669 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 108608 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 108547 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 108486 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 108425 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 108363 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 108302 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 108241 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 108180 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 108119 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 108058 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 107997 29 93.1 0 A..............A............. | A [107970] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126761-125635 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYOD01000001.1 Salmonella enterica strain BCW_4916 NODE_1_length_557952_cov_2.3657, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 126760 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 126699 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 126638 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 126577 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 126516 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 126455 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 126394 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 126333 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 126272 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 126211 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 126150 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 126089 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 126028 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 125967 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 125906 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 125845 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 125784 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 125723 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 125662 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //