Array 1 347654-350267 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQRA01000003.1 Listeria monocytogenes strain ICDC-LM3026 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 347654 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 347720 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 347786 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 347852 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 347918 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 347984 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 348050 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 348116 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 348183 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 348249 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 348315 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 348381 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 348447 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 348513 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 348579 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 348645 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 348711 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 348777 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 348843 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 348909 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 348975 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 349041 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 349107 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 349173 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 349239 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 349305 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 349371 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 349437 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 349503 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 349569 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 349635 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 349701 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 349767 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 349833 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 349899 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 349965 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 350031 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 350097 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 350163 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 350229 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [350254,350260,350263] ========== ====== ====== ====== ==================================== =============================== ================== 40 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //