Array 1 31693-31223 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025228.1 Actinomyces qiguomingii strain actinomyces sp. 410 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 31692 37 100.0 37 ..................................... GCGCCATCTGGTAGATAGTAGCTTCGACGTCAAAAAA 31618 37 100.0 35 ..................................... GTCCCGCGCCTCTACGCAAGCTTGGTACTCGACGT 31546 37 100.0 35 ..................................... CGGCGAGACTGATCTCGGACTGCCGGTCGGAGAAC 31474 37 100.0 35 ..................................... GTCTTGTCCCGGATTACTGCCGGTTCAGTGAAAGC 31402 37 100.0 34 ..................................... GCGGGCGGCAGGACGTTTGCCACGGCGGCGGCAA 31331 37 97.3 35 ................................A.... ATGTAGCCGTCGGTGTGGCGCATCTTGCCGCGCGA 31259 37 91.9 0 .....A........................C....G. | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 98.5 35 GTCAGGAAGCACCTCGCACCTCCAGGTGCATTGAGAC # Left flank : AGGTGTTTGTTGAAGGGCTCTGGACCGTTCAGCAGAGTCCTAAGTGGCGTACTCAACGGTGAAGTGGCGTAGTAGAGGTCCCGGCGGGGTTGGTGGGTGTTCGAGGTGGTGCTTGCCAGGGGCGTTGGTGGTCGGTGGTGCTGGTTGGGTGCAGTTCAGTGTCCGGGTGGTCGGTGGTGTTGGCTGGGTGTAGGTGGGTGGTGTCCGGGTGTGTGGCGCGTGGTGCTGGTGGGGCGCGCGTGGTTGGTGGGGTGTGGCGGTGAGGTTGCGATTTGGTCTACGGTACAAAGTTTGGTGCGTTTTGACCCCGACTTTTCCGCATGACTTCGTTGAAAGTTGGTGGCTGGAGGGGTCCAAGGGGGTGTCGGTGGCGCTTGGCTTGTTTTCAACGAAAGGTGGTAGTTTTGCCCTGGTGCCAGTCGGTTCCGTGGGGTGCTTGCGGGGTCGGTGGCGATCTGGCCTCTGGAAGTGGCGGAATGACGCGGTTTCCAGAGGCAGGG # Right flank : GCTTGGCGCCCTGGAGTTCGGGGACGGCGTCAACCTTGACCCTGGCCCTGGTGCCTTTCGGCCACAGCCGTCTGCGCAAGAGCGGACCGAAGGCCCGTACTGCGCTGCAGTGTCTTCTACGCCGGTTGAAGGCTTGAATTACGCAGTGGCGCAGCAGGCAGCTATAGGGCGCAATGGATGGATTCACTGTCGGGTCCGCGGGACCGTCGGGCCCAAGCCCGAACGCGTAGCCCACCCACTCCATCGCCTTCGCCACGCCGCGAGATGACGACCTCCGGCACCACAGCGCCAAATACGCGGAGCCCCTTGACGGTGTGAGTAGTCAACCTCGTCGATCAGCGGACGCGCCCGGGGGACCCGCCTCAATTGCGAAGGGTGCGCTTCTCAGGAGAACGCAGTCCGCCTCCAGGAGTCCGGGGTAACTAGACCGCGTTGCCTCCTTGCATCGCGACACTCACATCCAGTCCCGCCCACCGCCACTACGATCCGCCACGTGACCG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGAAGCACCTCGCACCTCCAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 181104-181429 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025228.1 Actinomyces qiguomingii strain actinomyces sp. 410 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 181104 37 100.0 35 ..................................... AGCAGCGTCAGTGCTGGCCACCGAAAAACGGAGCG 181176 37 100.0 36 ..................................... CGACCACTCCAGGTGGGTGGATCCATCATACGGGTT 181249 37 100.0 35 ..................................... CCTTCTACCCGTCGCTCTACCCACCCGGTCTTGCC 181321 37 100.0 35 ..................................... GCTGGGGGGCGCCCGTTGAGCTGGAAGACCAGGGC 181393 37 97.3 0 ..............T...................... | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 99.5 36 GTCAGGAAGCACCTCGCACCTCCAGGTGCATTGAGAC # Left flank : GAAGTCCTCTGGACCGTTCAGCAGAGTCCTAAGTGGCGTACTCAACGGTGAAGTGGCGTAGTAGAGGTCCCGGCGGGGTAGGTGGGTGTTCGCGTTGGTGCTTGCCAGGGGCGTTGGTGGTCGGTGGTGCTGGTTGGGTGCAGTTCAGTGTCCGGGTGGTCGGTGGTGTTGGCTGGGGGGAGGCTGGTGGTGTCCGGGAGTGTGGTTTGCGGTGCTGGTGTGGTGTGTGTGGCTGGTGGGGTGTTGGTGGGGTGTGGCGGTGAGGTTGCGATTTGGTCTACGGTACAAAGTTTGGTGCGTTTTGACCCCGACTTTTCCGCATGACTTCGTTGAAAGTTGGTGGCTGGAGGGGTCATGGGGGATGTCGGTGGCGCTTGGCTTGTTTTCAACGAAAGGTGGTAGTTTTGAGGTGGTGTTAGCCGGTCTCGTGGGGTGCTTGCGGGGTCGGTGGCGATCTGGCCTCTGGAAGTGGCGGTATGACGCGGTTTCCAGAGGCAGGG # Right flank : CCGGCACGCATCTGCCGCGTTTTGCGTCTCGAAGACAAGTCAGGAAGCACCTCGCATCCCCGCTGGCTGGTTAGGCGGTGGGTGTCGGCTGGTCCCGACTCCGCGTCGCTGCCGCGAGGTTCTCCGGCGGCCGATCTCGACGCCAGAGTCCGGCGATGAGATGTGCTGCTCGCGTGCTGACGACTAGCGAGTGACGGCTCGGTGCCTCGCGTTGGGCGGCGGGCCGGGCCGGAGCTTCGGGGCGCACGCAATGGCCATCAGGGCAAACCCACCCAATTCCCGGTTTCCCTTGGAAGTACGCGGAACCCGCTTCTGGGGCAGAATCCGGTGGTATCGCTCCAGCGTGCAGCGGGGTCCGCGATGCACGCTGGAGCACTGTCATGACACTCCGATCGGCGGTGAGATCCGCGTAATCACGCGGATTCCTCCACGGCGCTCGCTCCTGAAGCGTGCAGACCCATCGCGCACACCCGCGCAACACCACCCAGCAGGCGTTCCGG # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGAAGCACCTCGCACCTCCAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 486674-487075 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025228.1 Actinomyces qiguomingii strain actinomyces sp. 410 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 486674 37 100.0 36 ..................................... AAGTAGACGTGTGCCATTTCCCCATGCCTTTCCTAA 486747 37 100.0 34 ..................................... GCTACAAAAAGTACTCTCACAGGCCAGTCTGTGA 486818 37 100.0 38 ..................................... TTCCCACGTAGGGTCGAAGAAATCGACCACTCTAACGA 486893 37 100.0 36 ..................................... ATTGAGCTGGAAAACCAAGGCATCCTGGCCGACCTC 486966 37 100.0 37 ..................................... AGAAAGGCCTTCAGCGCGGCGTTGTCTGTGGCAAAAG 487040 36 83.8 0 .........................C...-C.G.TC. | ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 97.3 37 GTCAGGAAGCACCTCGCACCTCCAGGTGCATTAAGAC # Left flank : GGGCTCTACTACTCCGGTTAGGGCTCTACTACGCCATTTAGGTGTTTGTTGAAGGGCTCTGGACCGTTCAGCAAAGTCCTAAGTGGCGTACTCAACGGTGAAGTGGCGTAGTAGAGGTCCCGGCGGGGTTGGTGGGTGTTCGAGGTGGCGCTTGCCGGGGGCGTTGGTGGTCGGTGGTGTTGGTTGGGTGCGGGTGGGTGGTGTCCGGGGCTGTGGCGTGCAGTGCTGGTGGGGCGTGTGTGGCTGGTGTGGTGTGGCGGTGAGGTTGCGATTTGGTCTACGGTACAAAGTTTGGTGCGTTTTGACCCTGACTTTTCCGCATGACTTCGTTGAAAGTTGGTGGCTGGAGGGGGCTTGGGGGGTGTCGGTGGCGCTTGGCTTGTTTTCAACGAAAGGTGGTAGTTTTGGGGTGGTGTTAGCCGGTCTCGTGGGGTGCTTGCGGGGTCGGTGGCGATCTGGCCTCTGGAAGTGGCGGTATGACGCGGTTTCCAGAGGCAGGG # Right flank : CGCTCAGCATCGGATGTGGTGGTTCCCGGCCGGGCGCCCGCGTCGATCTCGGCCTTGTGTGCCAGGTACGCAGCGCCTCGGGGCGGGGCGCCCAGCTCCTCGGCGATCCTTCAGATTCGCCCCCTTGGACCGCTCGGGGTCCCTACGGGCCTCCGCAGCCATCCTGGTAGCCCGCTCCCGCAGCCCTCTTCGGGGTACTTCCTTTGTGCACTGCCGGCAGTGATCCTTCCGTGTATTCACTGCCTCCATCAAACCCGGTGCGGTTCAAACATCGCCGCCACCGCCCTAGCCTTGATGTTTCATGGGGTGGTTGGGTTGGGCTTGGGGGGTTCGGGATTGGTTGGGACCGGGGTTGATTATGGCGTGTTGGGGGCGTGTGGGTGTGGGGTGGTGCCGCGTGTCGTCGTGCGGTGGTCGGGCCTTTCCTGGGGCCGGTGCGGGGTTTCCTCCGAGGGGTTGTGGTGGGGTAGGGACAAGATGGCTGGGCTTATGGTGCTGCC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGAAGCACCTCGCACCTCCAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 499456-499789 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025228.1 Actinomyces qiguomingii strain actinomyces sp. 410 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 499456 38 100.0 35 ...................................... GCTGCAGACGCCTGTTGACATCATACAGGCGGACG 499529 38 97.4 36 ...................A.................. TCTCGGCCGCCACCTCTTCGATCAAATTATCGTTCA 499603 38 100.0 37 ...................................... CGTCCATGGCCACCGAGTAGGCGACCAAAGACAATAC 499678 38 100.0 36 ...................................... GAGACCCTGGTGCCAGGGGGCAGGTGCAGTCCAAAA 499752 38 94.7 0 .....................T...............G | ========== ====== ====== ====== ====================================== ===================================== ================== 5 38 98.4 36 GTCAGGAAGCACCTCGCACCTCCAGGTGCATTAAGACA # Left flank : CGGGGACTATCGGGCGCGCCGGCCCGAATGCCGGCGCCAGGCAACCGTACCCACACCCCCACCAGGACCGCCACCCCCAACCACCCACCTGTGGAAAACCCGCCCATCCCGAACGATCTGCCTGTGGAAAACCTGTCCTCAACCCGCACGGCGCACACCTCCACAGCGGACAACAGCGCGTTACTTGTTCCGGTTTCGGTGCGCGGCTTGTGGTGGTCTCGGTGGCGAGAGTGGCTGGTGGTGCTGGTGGGGCGTGGCGGTGAGGTTGCGATTTGGTCTACGGTACAAAGCTTGGTACGTTTTGACCCCGACTTTTCCGCATGACTTCGTTGAAAGTTGGTGGCTGGAGGGGGTTTGGGGGGTGTCGGTGGCGCTTGGCTTGTTTTCAACGAAAGGTGGTAGTTTTGGCCTGGTGCCAGTCGGTTCCGTGGGGTGCTTGCGGGGCCGGTGGCGATCTTGAGCCTGGAAGTGGCGGTATGGCGCGGTTTCCAGGGGTAGGG # Right flank : GGAGGTGAGTCCACCTCCCCATTGCCGAGGTCGGTCCTACGCGGGCTCTTCCGGTTTTGGGGGTGGGAAGGGGGCGATGGCTCAGCAGGGAAGGTAGGTCGGCAGCCCGGTGGGGTGGGATACCCCGGTGCACGTGCCGAGGCGGCTGATGGTTCGTGCGTGCACCCACAGTCGTACAGTCGTGCCGGCCATTGATCCTGCCGCGCACCGGCCGCCGGGCCAGAAGGTCCGAGATCGGCATAAACGCCGTTGATGCTGCCGTGAGCCGCTGCGGCATCGGCATGATTCCAACGTTCTGTTCGCGGCATCCAACGCTGCCCGGGTCGTTTGCGCCGATTCTGGACACTTCCGGACCGCAAGGGGCCGCATGCTTGCCGTTGCGCCGCCCTAACGCCCTGCAGGCTCCGACGGTCGGCGCTACGATCGCTGCGTGCCGCGTCACCGCTCAACGAAGAGATCGTGCAATGGACTCGCAACCGGATGATCCGTCGTCTTCTGTG # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGAAGCACCTCGCACCTCCAGGTGCATTAAGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 5 551659-551264 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025228.1 Actinomyces qiguomingii strain actinomyces sp. 410 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 551658 37 100.0 37 ..................................... GTGCGGGGCGTGCTTGTCGCTGTTCGCCTTCATTGCT 551584 37 100.0 27 ..................................... GCGTGGGCGTGGGCGTGGGCGTGTTAC Deletion [551521] 551520 37 100.0 36 ..................................... TGCCGCCGGCCACCTCAAGAGCGGTTGCCGCAATGA 551447 37 100.0 36 ..................................... AGGGGGAAGCTAGCCTGCGGAGGCCAGAGCTCCAGG 551374 37 97.3 37 .G................................... CAACAGCTCGCCCGGCTTCAGCCGCTTGATGTTGTCG 551300 37 97.3 0 .............................G....... | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 99.1 35 GTCAGGAAGCACCTCGCACCTCCAGGTGCATTAAGAC # Left flank : TAGGTGTTTGTTGAAGGGCTCTGGACCGTTCAGCAGAGTCCTAAGTGGCGTACTCAACGGTGAAGTGGCGTAGTAGAGGTCCCGGCGGGGTAGGTGGGTGTTCGAGGTGGTGCTTGGCGGCGGTGCTGGCTGGGGTGCAGGTGGGTGGCGTCCGGGTGGTCGGTAGTGCTGGTTGGGTGCAGGTGGGTGGTGTCCGGGTGTGTGGCTTGTGGTTCCGGTGGGGCGCAGGTGGTTGGTGTGGTGTTGGTGGGGTGTGGCGGTGAGGTTGCGATTTGGTCTACGGTACAAAGTTTAGTGCGTTTTGACCCCGACTTTTCCGCATGACTTCGTTGAAAGTTGGTGGCTGGAGGGGTCTTGGGGGGTGTCGGTGGCGCTTGGCTTGTTTTCAACGAAAGGTGGTAGTTTTGGGGTGGTGTTAGCCGGTCTCGTGGGGTGCTTGCGGGGTCGGTGGCGATCTGGCCTCTGGAAGTGGCGGTATGACGCGGTTTCCAGAGGCAGGG # Right flank : GGAGGTGCGCCCGCCTCCCGATCGTCGAGTTCGGTTGTTGTGACGATCGAGTTCGGTTCTGTGCGGTTTTTTGGGTTTGGGAGTGGGCCGGGGGCTGGAGACCCAGTAGGGATGTAGGGCCGGTGGGGAGGAGTGTTCCCGGCGTGCGTGCCGGAACGATCTGGTGGCTTCGTGTGTCCACTGCGACGGTCACGGCCGCCGGTGGTTTCGCCACGTGTCGGGCGCCGGATGCTGGGGTGGAGTGTCGAATTTTGGGACAAGCCAAACCGGACAAGCCACTTATTCTGCCTGCGGCGTCCTCTCATTCCTTCCGGTTCCGAGCAGCCATGCCGCGGTGAAGGCGACCACCACCGAGAAGACTGCCACCCCGATCGCCCCGTAGAAGTTCGACATTGAGCCGTCGGCGGGGATATAGGCGGGCAGCGAGGCGAAGCTCGGGCTGGCGATGACGTACTGGGTGGTGCCCAGCAGGCCGGCCAGTAGCCCTCCGGCGCCACCGC # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGAAGCACCTCGCACCTCCAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 6 1225942-1227270 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025228.1 Actinomyces qiguomingii strain actinomyces sp. 410 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 1225942 36 100.0 35 .................................... ACGTGCAATACGGTAGCCCGAAACGCCAGCCTGTG 1226013 36 100.0 36 .................................... GGCGAAATAGCGGGGTCGTAACCCGTCCCTGCCGGC 1226085 36 100.0 37 .................................... ACGGTGGCGGAGGTGGCCGACAGCTCGACGAACTCGG 1226158 36 100.0 36 .................................... CTCCACAAGCTCGCCCGCGTGCTCGCGGTCGTAGGT 1226230 36 100.0 35 .................................... CCGTCGTCGTAGATGAACTCAGCTAGTGAGCCGAG 1226301 36 100.0 35 .................................... GACCGATCACGCTCGCGCACCCTCAGGTACCTCAA 1226372 36 100.0 34 .................................... CCGGCGCTACCCGGTTCGGCCGGTCGACGCCGCG 1226442 36 100.0 36 .................................... ACAAGACAGCCGCTCTAGTGGTGGTTGCGGCGCGGA 1226514 36 100.0 34 .................................... CGGACCATCCGCCGCCAACCCTCATCATCCACCG 1226584 36 100.0 36 .................................... AGGCTGTTTGTAGCGCGTCGGTGAGCGCGCGGGCCT 1226656 36 100.0 35 .................................... TGGTTGAACAGGCCGATGTCGACAGAGAATTCTCG 1226727 36 100.0 35 .................................... TTGTAGTCCAAGGCTCCCCCTCTCAATGTCTTCCT 1226798 36 100.0 36 .................................... AGCGAGGAGGTGCAGTGGGCCGACGAGGACTACCAG 1226870 36 100.0 37 .................................... CCCTACGCCCAGGTGTGCGGCGAGCTCGGACTGGGAC 1226943 36 100.0 36 .................................... CGGTGCAGCACAGTCACCTGCTCGCCGTGGGGGCGT 1227015 36 100.0 37 .................................... TCGTCCGTCAGGAGACCCGCATTGACCAAGCCGTCGA 1227088 36 100.0 36 .................................... ATCAGTGACGACACGTCGAAGACCACGGACCGGTCC 1227160 36 97.2 37 ..................................A. AGACCTGGGCCGGCGCTGGCCGGGTGCAGTAGCAGTA 1227233 36 86.1 0 ..A.........C..GC.A................. | G,C [1227264,1227267] ========== ====== ====== ====== ==================================== ===================================== ================== 19 36 99.1 36 CTCTTCCCGGTCTCCAAGGCCGGGCTCCATTGAGGC # Left flank : GTGCTGGGAGAGCTGGATGACTACACGGCTATGGTGACTAGATGAGGACGAACCGACGCCGGTATCTCATCGCGTACGACATCCGCAAGCCCGTGCGGCTGCGCCGAATCTGCAAGTTGATGGAGGCTAACGGTGAACGGCTCCAGTACTCTGTGTTCATCTGCGATCTGAACCGGACCGAGTTGATCCATTTGAGGGCTGACAGTGAGGAGATCATGAACCTCGACGAGGATTCGGTGGTGATCGTCGACCTCGGCGAGTTGGGGGAGGATCGCTTCACGTTCGTCGGTCGGCGCGCAGGACTGCCCACGCAGGGGGCCCAGATTGTTTAGCGAGCGCTCCGGTGCCGCCCCGATCCCCGGGGAGCGCTCGAAAGCGTGGTACGGCGCGGTTTTCCGGCAGTTGGAGGATGAGCTTGTGCGATTGGGCAGCTCGTTTTTACACTAGCGCTCGCGAGACCACGTAGAATCCTTGACCAGCCGCGGCAAAATCCGCGAGCT # Right flank : CATTGGCGCAAGCCGATGCCGCAGGTCGACAGCCGTCGGCCACACCGCCCCTGCGCCGGCTGTGCGGGCGCAGGCCCACGGGCAAATCGGGCGACTGCAGGGGCCCGGGCCGCCGGAACGCGGCTCGGGCCCTGCTGCTCGGTATTCGGCTCCGGCTTGTACCTGGGTGGATCACATCCCGCCCAGGAACTGGGCGATGAAGATCTTCACGATCATGGCCACGGGGTAGACCATCGCATAGCCGAGTGCCACGCGCGGGTCGGAGCCAGTGCGCTCATTGGCGAAGGCCAGAACCGCAGGTTGGGTCTGCAAACCACCGATCAGGCCGGACAGGCGCGTGCCCCCCATCTTCACGATCCAACGCATGGACGCATACATTCCGAAGCCCACAATCGTGGTGATGATGAACCCGGTGATCAGGATGCGCCACCAGTCGCCGCCGGTGAACGCATTGGCGATCTGACCGCCGGCGCGGACGCCGGCCTGCGCCAGGAAGATCA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCGGTCTCCAAGGCCGGGCTCCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 7 2620104-2620940 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025228.1 Actinomyces qiguomingii strain actinomyces sp. 410 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2620104 37 100.0 36 ..................................... CGTTGTCGGCATAAAGTTGCCAGCCCATGATAACTC 2620177 37 100.0 36 ..................................... GTCACAACGAGAGCTAAAGGGAAGCCCCAGTCTAGC 2620250 37 100.0 37 ..................................... GTTGCCCTAGCCGTCGTCGACATCGCCATTGTTGACG 2620324 37 100.0 36 ..................................... ATCAGATCGCGCACCCAGTCGTCTAGTCCTTCGTAG 2620397 37 100.0 35 ..................................... CTCCGGGTTCGGCGTCTCCGGGTTCGGCGTCTCCG 2620469 37 100.0 37 ..................................... CTGCGCCCCTAACAGTGCGAAGGCGCCCTCGACCCCC 2620543 37 100.0 35 ..................................... AAGGGCGGCGTACGAGATCGCTTCGCCAGTGAGGG 2620615 37 100.0 35 ..................................... GCGCGTAGCTGCGGTGGCAGCGCAGCTTTTACTAA 2620687 37 100.0 36 ..................................... GTGCCGGTTCGAGCCAGCCCACCGCCGGTTTACGCC 2620760 37 100.0 35 ..................................... GTCACTGGTACGAAGACCCAAAACATCAGGAGACC 2620832 37 100.0 35 ..................................... AAACCACGTGAAAACGGCGACGCAGGCCACCATGT 2620904 37 75.7 0 ..........................C..CACAGCCT | ========== ====== ====== ====== ===================================== ===================================== ================== 12 37 98.0 36 GTCAGGAAGCACCTCGCACCTCCAGGTGCATTGAGAC # Left flank : GGGGTCTACTACTCCGGTTCGGGCTCTACTACGCCACTTAGGTGTTTGTTGAAGGGCTCTGGACCGTTCAGCAGAGTCCTAAGTGGCGTACTCAACGGTTAAGTAGCGTAGTAGAGGTCCCGGCGAGGTAGGTGGGTGTTCGCGTTGGCGCTTGCCGGGGGCGTTGGTGGTCGGTGGTGTTGGTTGGGGGTAGGTGGGTGGTGTCCGGGGCTGTGGCGTGCGGTGCCGGTAGGGCGTGTGTGGCTGGTGGGGTGTGGCGGTGAGGTTGCGATTTGGTCTACGGTACAAAGTTTGGTGCGTTTTGACGCCGACTTTTCCGCATGACTTCGTTGAAAGTTGGTGGCTGGAGGGGGCTTGGGGGGTGTCGGTGGCGCTTGGCTTGTTTTCAACGAAAGGTGGTAGTTTTGGGGTGGTGTTAGCCGGTCTCGTGGGGTGCTTGCGGGGTCGGTGGCGATCTGGCCTCTGGAAGTGGCGGTATGACGCGGTTTCCAGAGGCAGGG # Right flank : TTTCACCTACTTCGGCCGAGGGTTCGCTGGTTCCTGCGCAGCTTCACCTCTCCAATAAGCTGTGGGTAGGCCGTGACGAAGCGTTGCCGCCCAACACTCGACCGCCGTCGTCCCCTGCTGTGGCCAGCACCCAGACGGAACGACACCATGGGGCATACGGGCAACTGGTCCCACCCGGAGCCGTCGGAGGTAGCCTTGCCAGGTGGCGAAGACAGCCGGGATTCTGTACGCGGTCCCCCGCTTGGACGTGTGGGTCGTATGCCCCCGCTGTGCCGGCCCCGCTCACGTGGTGCGTCGCGGGGTCTTCTGCACCGCCTGCACCTGGCAGGCCACGGGCGCCGCATCCGGATGGATGTGCGGGTGCTGCGGACGCTGGGAGAACGACAGGCCATTACCCGCCGAGCCGACTCCCGCGGAGCTGTTTTGGCGCTGCCCCTCCTGCGGTCGGCGTGAGACGACAAGAACTAGAGTGTCCGCCCGCTCACGCCCGTCACGCACCT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGAAGCACCTCGCACCTCCAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 8 2824343-2824739 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025228.1 Actinomyces qiguomingii strain actinomyces sp. 410 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2824343 37 100.0 35 ..................................... GAGCTTCGGCGGTTTGTTTGCAGATATTTTTGGTG 2824415 37 100.0 35 ..................................... TAACGTCGACTCGGCATATGAGATTGCTGGAACGG 2824487 37 100.0 32 ..................................... CTCGGTAATAGACCCGTCACCATTGCGGTCGA 2824556 37 100.0 36 ..................................... CTACGGTGACGTTGGGAGAACGAGGAGCGATCCTGT 2824629 37 97.3 37 ...................T................. TAGGAGGAGACAAGGTCGAGTTCACGGACAGCGTTGT 2824703 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 99.5 35 GTCAGGAAGCACCTCGCACCTCCAGGTGCATTGAGAC # Left flank : GGGCTCTACTACTCCGGTTCGGGCTCTACTACGCCACTTAGGTGTTTGTTGAAGGCCTCTGGACCGTTCAGCAGAGGCCTAAGTGGCGTACTCAACGGTGAAGTGGCGTAGTAGAGGTCCCGGCGGGGTTGGTGGGTGTTTGAGGTGGCGCTTGCCGGTGGCGTTGGTGAGGGGCGGTGTTGGTTGGGTGTAGGTGGGTGGTGTCCGGGGCTGTGGCGTGCGGTGCTGGTGTGGTGTGTGTGGCTAGTGGGGTGTGGCGGTGAGGTTGCGATTTGGTCTACGGTACAAAGTTTGGTGCGTTTTGACGCCGACTTTTCCGCATGACTTCGTTGAAAGTTGGTGGCTGGAGGGGTCTTGGGGGGTGTCGGTGGCGCTTGGCTTGTTTTCAACGAAAGGTGGTAGTTTTGGGGTGGTGTTAGCCGGTCTCGTGGGGTGCTTGCGGGGTCGGTGGCGATCTGGCCTCTGGAAGTGGCGGTATGACGCGGTTTCCAGAGGTAGGG # Right flank : CACCCGTTAACAACGGGTCAGCGGCGTTGCTCCCCATCGTTGAGTTCGGCTGTTATAACCATCGAGGTCGGTCGACGTTACTGCCGAGTTCGGTTCTGCGCGGGTTTTCCGGCTGAGGGATGGGCAAGGATGTGGGGACCCAGCAGGGGCGTTGGTGGGCCGGTGGTGTGGAGTGATCCCGATGCGAGTGCCGGAACGATCTGGTGGTTTCGTGTGTCCACTGCGGCGGTCACGGCCGCCAGCGGCTCCGCCACGTGCCGGGTGCTGAGCGCTGGGGCGGAGTGCCCAATTTTCGGACAAACAACGCTGGAACTAACGTCAAGCGCTGCGACGTCGGCATCACTCCAACGCTCTACTCGCCGTCACCAACGCCGCCGGGGTAGTTCGTCCCGAATCTGGACACTTCGACACCGCAATGTCTCTCCTCGGCCGGGCCCCTGTTGCTCGGCTTGGAAGTTCTTCCGGTTCGCGCATGTGAAAATGAAGGAAGGTAGGGATGC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGAAGCACCTCGCACCTCCAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 9 2906572-2915819 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025228.1 Actinomyces qiguomingii strain actinomyces sp. 410 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 2906572 29 96.6 32 ............................C CGGGCCGACGGCGGGGACCTGCTGGACCGCGT 2906633 29 96.6 33 ............................C TACGTGGTCGGGCATGTGTCCTCCAGGATCGAC 2906695 29 96.6 32 ............................C ACGCCGTTCTTGTCGGGGATGCCGTAGTTGAG 2906756 29 96.6 32 ............................C ACGGTCAAACCATCATCGCGATAACTCTCGCC 2906817 29 100.0 32 ............................. ATGGCCCGCTCCCAGAGGGGCCGCGATTACCT 2906878 29 100.0 32 ............................. TTGAAGGACCCGTCCAATGTCGCGGTTCTTAA 2906939 29 96.6 32 ............................T CCCAAGGCATTCGGAAAGCAGATTCTCTGATG 2907000 29 96.6 32 ............................A GCAGCTGAGGATCTTAATGGTGCTATTGAGAA 2907061 29 96.6 32 ............................C TCAAAAACCGATAGTGGCAGCCAGGATATTTC 2907122 29 100.0 32 ............................. CGAAGAACCCCGCCATGGTGGTGCCGTAGCCG 2907183 29 96.6 32 ............................C GCCATCTCAATAACGTCATACTGTTCCTGGAT 2907244 29 100.0 32 ............................. ACCATCAGTGTTAAGGTTTCCGAGGAAGACCT 2907305 29 96.6 32 ............................C ACGAATTCATTCATCGCGCTAGCGCTTGCCAT 2907366 29 96.6 32 ............................T CGGTCCCGCGGAACAGGGGACGATCAAGATCA 2907427 29 96.6 32 ............................T CAACACAGAGCGTTATTGACATCCTTACGGAA 2907488 29 100.0 32 ............................. AACGGATCGAATGCCATCACGATCACCGGTCC 2907549 29 96.6 32 ............................C TGGACGCCGCCCTCAACGATCCCCGGATCACC 2907610 29 100.0 32 ............................. CGGACTTTGACCGGCTCTACCGCGCTCTCCGC 2907671 29 96.6 32 ............................T TCGGGTACAGGGTTAGGCCATTGTGATAGGGA 2907732 29 100.0 32 ............................. TTCTACGGCGACCGGGCCGCCTGGGACCGGTA 2907793 29 100.0 32 ............................. TTCGACTCTTCCCCGGCGGTCTGGTATAGCGA 2907854 29 100.0 32 ............................. TTAGGGAAGCCCGGATTAAAGGAGAGCAGAAT 2907915 29 96.6 32 ............................T TGCTGGTAGAATTCGAAGCCGGCATATTAGCC 2907976 29 96.6 32 ............................T ACGCGAAGCGTACTCGGTAGACGCATTCGATC 2908037 29 96.6 32 ............................C TGTCGGTTCCCAGGCCAATGGTGGCGGCGTAT 2908098 29 96.6 32 ............................T CGCAGCGCCTCTCAATGGTTAACGCTTTCAGA 2908159 29 96.6 32 ............................C CGCTCGACCTCGCGGTCGGTGGCGGCGGCGGG 2908220 29 96.6 32 ............................C CGCTCGACCTCGCGGTCGGTGGCGGCGGCGGG 2908281 29 100.0 32 ............................. CCATCACCGGACGGACCGCACCTCAACTAACA 2908342 29 96.6 32 ............................C ATACGCCACCGACCAAAACACTCCGCCCAGAG 2908403 29 96.6 32 ............................C TCGATGGTCGACGAAGTTGCCGAACCCCATGT 2908464 29 100.0 32 ............................. CTCCGAATCGGTCGAGGCCGAGATCCGCCTTA 2908525 29 100.0 32 ............................. CTTCCTGGGCTCTCTCCCGGATCGCCTCGGCC 2908586 29 96.6 32 ............................C AGGCCCTCAAACTCGGCAAGGCCGTGGGCGTC 2908647 29 100.0 32 ............................. CACCGGCCGCCTCGCAGGCAACCGTCAAACGC 2908708 29 100.0 32 ............................. TCGCGTTCGGGGCGGCTGGCGTGATCCAACCT 2908769 29 100.0 34 ............................. TCGCGTTCGGGCGGAAGGCGCGCGGTCAGGTGGC 2908832 29 100.0 32 ............................. TCGCGTTCGGGGCGGCTGGCGTGATCCAACCT 2908893 29 100.0 32 ............................. CCTGTCGCCCGGCGTGCACGGTACCAAATTCG 2908954 29 100.0 32 ............................. TGTATAACTGGATGTCCATGACGCCAAGTAAT 2909015 29 96.6 32 ............................T TCGGCTTCGGCGGTCGCTCCGGCGCCGTTGAC 2909076 29 96.6 32 ............................A GCAACTCCGCACAGTCGATCGCCTAGCCCAGT 2909137 29 100.0 32 ............................. CGCTCAAGGCCGCCGGGTACAGCGTCGAGGAG 2909198 29 96.6 32 ............................T ACAGCGTCGGCCTCGCCGTCATGTAGGCCGCG 2909259 29 96.6 32 ............................T GTGTCGGGTTGTTATACAGATTGCGAATGCCA 2909320 29 100.0 32 ............................. GCGGCCGAGGATCTCAACGGCGCTATCGAGAA 2909381 29 96.6 32 ............................C AGAGGGGGCGCCGGGGATGGAACCGGCGCCCC 2909442 29 96.6 32 ............................T CCGTCGGCCTCGGCCTCCAGGGCCTTAGCGGG 2909503 29 96.6 32 ............................C GCTCCGTCGTCGACGGTCGCTTCCGGAGGCGT 2909564 29 96.6 32 ............................C TCAGCCGAGCCCACATCAGCCAGGCCGAGATG 2909625 29 100.0 32 ............................. CATACGTCCACACATGCGGGCGTAGTGCGACT 2909686 29 96.6 32 ............................C GCGACCACCGGCTACCAGGACACGCCGTGGAA 2909747 29 96.6 32 ............................C GCGAACGCGCTGGGGATTGCCTCCACTGGTAG 2909808 29 100.0 32 ............................. TCGACGGCATTGTTGTCGACGCCAATTCTATG 2909869 29 96.6 32 ............................T GGACCCAGCCGATAATGCTGTAGATTCCAGCG 2909930 29 96.6 32 ............................C TGGCCGCGGCGCCGTGTAATCAATCTCACCCT 2909991 29 100.0 32 ............................. GTCAGCGAGGAAGACCTCGAGTGGCTCAACAC 2910052 29 96.6 33 ............................T TCGTAGTCTCGCTCGAACTATCCGTATTCGCGC 2910114 29 100.0 32 ............................. TCGGCGGCGGGCCGTAGGGTGATCCCGCTCGT 2910175 29 100.0 32 ............................. GCTATCCGCAAATACACGGGTGAGTTGAAGTT 2910236 29 100.0 32 ............................. TTGAAGGCTCAGAATTTTGATCTGTTGATGGC 2910297 29 96.6 32 ............................C ACGAATTTGTTCATCGCGCTAGCGCTTGCCAT 2910358 29 96.6 32 ............................T GACGTTCGGATTGTCAGTATGGCTATGGACGA 2910419 29 100.0 32 ............................. GAGAGCGCCCGGCGAGGAACGCTGCTACGGCT 2910480 29 96.6 32 ............................C ATAGCCATCTGCTTGCAGTTCCTTCAGCACGC 2910541 29 96.6 32 ............................T CTTGAATCTGCTTGCCCGTCGACGATTTCAAC 2910602 29 96.6 32 ............................T CGAGATGGAGGATGCGCAAGACGCGTTTTGGG 2910663 29 100.0 32 ............................. GTGCACTGTGATGCGCGGTGGTTTATCGAGGG 2910724 29 100.0 32 ............................. ACGCCTTTTGGGCCACCGTCTGGGAGTTTTTC 2910785 29 100.0 32 ............................. GAGAGGGCTCGGCGCGGAACATTGCTACGACT 2910846 29 96.6 32 ............................C TGAAATGCGTGACGTGCTGTACTGCTTCTGGA 2910907 29 96.6 32 ............................T AATTGCAACATTGGCGTCGGTCGCCACTGCGT 2910968 29 100.0 32 ............................. CACGTGAAGCGGAGACTGGGCACCCGCCGCGA 2911029 29 96.6 32 ............................C GCGTTGTACCGGACGGCGGACATCGCCTACGA 2911090 29 100.0 33 ............................. GAGCGGGCCACTGTACCCGGCACATTTAGTACA 2911152 29 96.6 30 ............................C CCTCCCTACGGCGAGGGTGAGTGGGTGGAA 2911211 29 96.6 32 ............................C CGTTCCATGCTTCCCATCCTATCGTGCTATAC 2911272 29 100.0 32 ............................. GCCGGCGTCGACTACGAGACAGTCGACCTGTC 2911333 29 100.0 32 ............................. CCTGCTGGGCTCTCTCCCGGATCGCCTCGGCC 2911394 29 100.0 32 ............................. CTCGCCCGCGGATACAGCGCACCAAGTGGGGA 2911455 29 96.6 32 ............................C TGACCCGGCGGCGTCTCAGTGAATGGCCTACC 2911516 29 100.0 32 ............................. TGAATTCAGATCGGGTACCTTCACGTGCCAGT 2911577 29 100.0 33 ............................. CAGGACACGCAGGCTGGCGGTGTCGCTCTGGAG 2911639 29 96.6 32 ............................C GCTGGCGTCTGCCCATCGTCATCCAGCACCTC 2911700 29 96.6 33 ............................A TACAGTGCTGACCGCGACCCGCAATCGGACACC 2911762 29 100.0 32 ............................. GAACATGTCGACGGTCTCGAAACCGATTTCCC 2911823 29 96.6 32 ............................T CGCTCAATCGAAAGGGGAACATCATGAGCGAG 2911884 29 100.0 32 ............................. GTGATGTGGATTGGCTGATCATTGAACTCTGC 2911945 29 96.6 32 ............................C ACGGCCACCGGCTACCAGGACACGCCGTGGAA 2912006 29 96.6 32 ............................C CGGCCCAGCTCAAACCGGTCGTGCCAGCGGTC 2912067 29 96.6 32 ............................T CAGTCATGGGGTCACGCCTCCGGCATCGCGTC 2912128 29 96.6 32 ............................T TCCTCGCCAGCGCCTGAGAGGAGAAGCTATGG 2912189 29 100.0 32 ............................. GTGATCTCGTCTCGGGCCTGCCGGTTGGCGGG 2912250 29 96.6 32 ............................C CCGCCGAACACGTCCGCGACCAGCCCCACAGG 2912311 29 96.6 32 ............................C TACGCCACGCCTTCGCGACCGAGCTCCTCGCC 2912372 29 96.6 32 ............................T CGTGAGGGGCGCCTGCACCTGCACGTGGACGC 2912433 29 96.6 32 ............................T AATGTTCGATGCGGCGTAGTTCGATAGTAAAA 2912494 29 100.0 33 ............................. CAAAATATTTGTAGTTGGCCTGAGCGGCCCGAA 2912556 29 96.6 32 ............................C GCGAGGCCCGGCTTCTCGGCGCCCCATAGGGC 2912617 29 96.6 32 ............................C GCGAGGCCCGGCTTCTCGGCGCCCCATAGGGC 2912678 29 96.6 33 ............................T GACGCCCGATATGGCTATGGCAGCTCCGACGAG 2912740 29 96.6 33 ............................A CCGGTCGAAAAAGAACACCCCACCCGCCAGCCG 2912802 29 100.0 32 ............................. TGCTGGTAGGGCTGGTCGACGTCGGCGACGCT 2912863 29 96.6 32 ............................T GCCCTAGGAGGTCACGTAGTGCGGCGAACACC 2912924 29 100.0 32 ............................. GCCCATAACACTCAGCCTGTAAGCGCGTTAGG 2912985 29 100.0 32 ............................. TTGAGCGTGGTGGTCGTGGTCGTGGTCATTGC 2913046 29 100.0 32 ............................. TGCTTTCCGGCGCGCAAGCGCTGCCGGCTCGC 2913107 29 100.0 32 ............................. TCGAAGATCGTGGTCTGCCGGCCTTGCTGGTG 2913168 29 100.0 32 ............................. GGTGTAGGCCACGTCCGCCTGGTCGTCGGCGA 2913229 29 100.0 32 ............................. CTGCGGGGGTAGCGGGGATCAGCTCCGACAGC 2913290 29 100.0 32 ............................. CGATCGGGCGGGCGCAGATTGGGGATGCCGCT 2913351 29 96.6 32 ............................C CGAGACCGGGGACTCGGCGGCCGGCGTGAGGG 2913412 29 96.6 32 ............................C ACGACCACCGTGCCCGGGGGGCTGGTGTGGGA 2913473 29 96.6 32 ............................C GCGGCCTCCACGTCAGCGTCCTCGGCGTCAAG 2913534 29 100.0 32 ............................. TTGGTGCGCGCCGAGTACCGCCGCGCCCACGC 2913595 29 100.0 32 ............................. CTCATCTGCGCGACGGCCCCGGCCCGCAGTAG 2913656 29 100.0 32 ............................. TTGGTGCGCGCCGAGTACCGCCGCGCCCACGC 2913717 29 100.0 32 ............................. CTCATCTGCGCGACGGCCCCGGCCCGCAGTAG 2913778 29 100.0 32 ............................. CTGATTTCGGCGGCCGTCCGTATTATCGGCAA 2913839 29 96.6 32 ............................C CCTGGGCCACACACCCCGAGCTACGCCTCGAC 2913900 29 100.0 32 ............................. GTGGTGCCGGCCTCGAAGGTGAGGGCGGCGGT 2913961 29 100.0 32 ............................. GCCGCATAACCCAAACGGTTGACACCCGAGAG 2914022 29 100.0 32 ............................. CGCCTGCTGATGGAGGCCAGCGACCGATACAG 2914083 29 96.6 32 ............................C CCGGCGGCCCTCACCGCCCGGGGAGGCAGCCG 2914144 29 96.6 32 ..............G.............. CCCGCCTCACATTCACCGCCCCCACCCCCAAC 2914205 29 96.6 32 ............................C CCCGCGGTAGCGGGGATGGCCCGGTGTATTAG 2914266 29 100.0 32 ............................. AAATGCCTGAGGGGCTGTGGGTGGGACGCATG 2914327 29 100.0 32 ............................. ATGACCGGAAGACCCTCTTCGACCTGACGAAA 2914388 29 96.6 32 ............................C GGGAAGTCGACGTTCGCGCAGGTGCTCAGCTT 2914449 29 100.0 32 ............................. CGCGACGGTTTCCAGTGGCCACCGCGCCGCTG 2914510 29 96.6 32 ............................T ACCATGGTCTGACCTGCGCTTCGCAGCTTGTT 2914571 29 100.0 32 ............................. TCTGGTGTGGCCCCTCAGCGGATGAACACGGC 2914632 29 100.0 32 ............................. CCCGATCTGGACAAGCTGGCGCGCGCGGTCGG 2914693 29 96.6 32 ............................C CGGATGGGTTTTCCGGCGCGGCGGATGCGGAC 2914754 29 100.0 32 ............................. GCTCTTCCATAGGCCGACGTGGTAGGTAGCTC 2914815 29 96.6 32 ............................C GTGGGAGAGGGCGCAGACCGTCTACCTGCGCT 2914876 29 100.0 32 ............................. GAGACTCCAATGACTTTCTCGATGAGCCGCCG 2914937 29 100.0 32 ............................. AGAGTGCAGGGACCAACTGGGCGGGAGTGCCC 2914998 29 96.6 32 ............................C ACCACTGAGGTTACCCTGCAACTAGACGTTTG 2915059 29 100.0 32 ............................. CTCGGCGGACAGTCGATGAGCACGGCGTCGTA 2915120 29 96.6 32 ............................C CGCAAGTTCCGGGCGCTGATGCGCCGGGGCCG 2915181 29 100.0 32 ............................. GGTGGCGATCTCATCATCCGCCGAATAGCTGG 2915242 29 96.6 32 ............................C GCAGCCATGGAGGACCTGGGCGTGACCGTGAC 2915303 29 100.0 32 ............................. AAAAAACGGCTGCCAGCAGTCGCATTGCCGGC 2915364 29 93.1 32 .....T......................T CCTGGAAGAACGCCGTCGGCCCGGCCATGGGC 2915425 29 96.6 32 ............................C GCGCTGTCGTCGACGATCCAGTTTGGTGTCCA 2915486 29 96.6 32 ............................C TGCTGGGCCGCTGCGCCCCGGCTGTGCCAGTT 2915547 29 100.0 32 ............................. AGGGAGCCGAGCCTGACCCGGACGCCTACCAG 2915608 29 100.0 32 ............................. ACCGGCCTCGTCCCCGCTGTCGTACAGCCGGT 2915669 29 96.6 32 ............................C TGGGCCGGCGAACGATCATCCTCATTCAACCT 2915730 29 96.6 32 ............................C GAGTTCGGCTCCATGGCTGAGCTAGCGGCCGA 2915791 29 86.2 0 ...............A...A....G...C | ========== ====== ====== ====== ============================= ================================== ================== 152 29 98.1 32 GTCGACCCCGCGCGAGCGGGGATGATCCG # Left flank : GCGGCGACTAGTTGCCGGTGGCGCGAACTATTCGGAAGAGGATGCAGGCGGATGGTAGTGCTGATTCTCTCCGCCGCACCTGCTTCTTTGCGCGGCGCCATGACACGTTGGCTGCTCGAAGTGAGCCCGGGCGTGTTCGTCGGGCATCTGTCCGCCAGGGTGCGTGAACAACTATGGGAGCTCGTCAGGGCATACATAGGCGACGGTAGGGCACTGCTCATCTGGTCTGCGCGCTCTGAGCAGCACTTCGAAATCGCATCACTTGGTCATGACCGCGATCCCGTCGATATCGAGGGCTGCATCGTGATGCGCACACCGTACCGGCAGATCGAAGGGGCCAAGTCGATTCCCGGCGCAGTAAAGCCCGCCAAAGAATCATGGTCGATCGCAGCCAGACGCCGCCGCTTCCGCAACACGGCGGAGCGGGCACTAGGTCAGCAGTAAAGGAATCACGTGTAGAATCTGCCTTCGGGGCGTTGGGAATCCAAGGATCTACAAGC # Right flank : CACCTCCCACATGCACAGGATGATTCACTTCCGACTGCACCCACCGCCACCGATGCTTCACTCACTCTTGCCCGAACCAGTCCTCTAAGCCGTCTGGAGCTCCGGCCCAGGCCAGCGCCTCCCCCATTTCGTCCGGCCGCAGCAGAATCCGATGAAAGGCATCGGCCACCCGAGCGCACTGCACCTCATCCGCCACTCCGGTGACAACCAGGTGGCATCGCGGCCCGTCTGCATCACCTAGAGACCCTCCGATCGGCGTAACGGTTGGTTCATTCACCTCAGTCGTCTCCCTACGCGGCGCCGCATCCCAGGCCCCGGCGTCGCCCACGCTGACCACGCCGCCGGCGACTTCCCAAGTGCACACGCGCCCAGGACGGCTGGGAAGCCAGAAGCAGCCGCGGGCGAGCAGACCGCGTCCGGCCAGGTCAGCGACGAACTCGCGCAGCCGCCCGGGGTGGAAGGGCAGCTCGGAGGACAGGTCCAAAGTGCGCACGCCGTGC # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 10 3083506-3083253 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025228.1 Actinomyces qiguomingii strain actinomyces sp. 410 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 3083505 37 100.0 36 ..................................... GATAGTGGCCAGGCGACAATCAACAATATCATTGGC 3083432 37 100.0 36 ..................................... AGGCAGCCGTCTGAGTGGTGTACACCACCACCCGAC 3083359 37 97.3 33 ............................T........ GTTCTCGAAGGTGTGACCCGCCGCGGTATTTAC 3083289 37 94.6 0 .......................G............T | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 98.0 35 GTCAGGAAGCACCTCGCACCTCCAGGTGCATTGAGAC # Left flank : GATGTCTACTACTCCGGTTCGGGCTCTACTACGCCATTTAGGTGTTTGTTGAAGGCCTCTGGACCGTTCAGCAGAGTCCTAAGTGGCGTACTCAACGGTGAAGTGGCGTAGTAGAGGTCCCGGCGGGGTTGGTGGGTGTTCGAGGTGGTGCTTGCCGGGGGCGTTGGTGGTCGGTGGTGTTGGTTGGGTGTAGGTGGGTGGTGTCCGGGGCTGTGGCGTGCGGTGCTGGTGTGGCGTGTGTGGTTGGTGGGGTGTGGCGGTGAGGTTGCGATTTGGTCTACGGTACAAAGTTTGGTGCGTTTTGACCCCGACTTTTCCGCATGACTTCGTTGAAAGTTGGTGGCTGGAGGGGGCTTGGGGGGTGTCGGTGGCGCTTGGCTTGTTTTCAACGAAAGGTGGTAGTTTTGGGGTGGTGTTAGCCGGTCTCGTGGGGTGCTTGCGGGGTCGGTGGCGATCTGGCCTCTGGAAGTGGCGGTATGACGCGGTTTCCAGAGGTAGGG # Right flank : GGAGGTGCGCCTGCCTCCCGATCGTCGAGTTCGGTTGTTGTGACGATCGAGTTCGGTTCTGCGCGGTTTTTGGCTTTGGGAGTGGGCCCGGGGTGTGGAGACCCAGTAGGGATGGAGGGCCGGTGGGGTGGAGTGTTCCCGGCGTGCGTGCCGGAACGATCTGGTGGTTTCGTGTGTCCACTGCGGTGGTCGCGGCCGCCGGTGGTTTCGCCACGTGTCGGGCGCCGGATGCTGGGGTGGAGTGTCGGATTTTGGGACAAGCGCTGCCGACGCCAACGTCAAGCGCTGCGGCATCGGTATCACTCCAACGCCCTGTTCACCGCCGCCAACGCCTTCGGGGCGCCTGATGCACGGCTTCTTCACCGCAGGTACTCGTACGTGAGGGACTTAGCGGCCGGGCCCCGCGCCGTTCGCCGGTGCGGGGCCCGGCCCGGTTTCAGGGGAGTTCACCGCATGGACTCACTCCATGGCGCGGATGACTTCCTCCACGGTCTCCTTGG # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGAAGCACCTCGCACCTCCAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 11 3503724-3505431 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025228.1 Actinomyces qiguomingii strain actinomyces sp. 410 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 3503724 36 100.0 38 .................................... CCACACCACCAGGCGCGGCTTGAGCGCCCGCACAGCCT 3503798 36 100.0 36 .................................... ATATACCCATTGAAAACGATGTTGTTCTCGTTTATC 3503870 36 100.0 35 .................................... TTATGGTCGGAGTCGGTGACCTGGCCGCCGGTGAA 3503941 36 100.0 38 .................................... TCGTCCATGCCCAGGGGCTCGACAGCCCAGGCACCGCG 3504015 36 100.0 38 .................................... TCGTCCATGCCCAGGGGCTCGACAGCCCAGGCACCGCG 3504089 36 100.0 39 .................................... CGCCCGTCAGATGACGGCCGTGAGGACCAGGCTGGTCCC 3504164 36 100.0 37 .................................... CCGATTGTGATACTCGTGTGCTCGTAGTTCGCCGGGA 3504237 36 100.0 37 .................................... CAATATCCTGTGCGCCGATGTGCCGGTAGACGGATGC 3504310 36 100.0 36 .................................... CAGTCGCGGCCGGCTGAGACTTGTGTTGGTACGCCT 3504382 36 100.0 36 .................................... CTTTCAGCCAGTCGAGCCCACCGGAAACACCCGCCT 3504454 36 100.0 36 .................................... CCGACTGTGTTGTCGTACAGGTCAGAGAAGCGGTTA 3504526 36 100.0 37 .................................... CTCCAGTAGTGGACGGACGCGGACGGTAGATATGCGG 3504599 36 100.0 37 .................................... GCCCAGCCCTGGGCGGCGATCTCCTCGAGCTCCTGAC 3504672 36 100.0 37 .................................... CTCCAGTAGTGGACGGACGCGGACGGTAGATATGCGG 3504745 36 100.0 35 .................................... CCGAGTGCCTGTGCTGAGGGCTGATGGGTGTCCTT 3504816 36 100.0 37 .................................... TCGGGCAGTATGACCTGGCTGGTGCCGTCGTCCAGGC 3504889 36 97.2 37 .......................A............ TTCTGGGCCTCGGCCTGGACCTGCTGGGTCGCGGACT 3504962 36 100.0 37 .................................... AAGTCGACCAACTGCTTGAGCAGGATCAGGATCAGCC 3505035 36 100.0 36 .................................... AAGTTGGCATCCGGCCGCGGTGGCTGACAGGCGACT 3505107 36 100.0 35 .................................... GGCTTCCTGGTAGGTCTCGGCGAAAATGTCGGGCT 3505178 36 100.0 37 .................................... TTCTGGGCCTCGGCCTGGACCTGCTGGGTCGCGGACT 3505251 36 100.0 37 .................................... AAGTCGACCAACTGCTTGAGCAGGATCAGGATCAGCC 3505324 36 100.0 36 .................................... TCCGGCCAGCCGCACACGACGTCAAGCTGGTGGCGC 3505396 36 97.2 0 .......T............................ | ========== ====== ====== ====== ==================================== ======================================= ================== 24 36 99.8 37 GTCTTCCCGGTCTTCAGGACCGGGCTCCATTGAGGC # Left flank : TCCTGTTCGGTCTGATCGCCGCCGGGGAGGCCAGCCTGCGGTCCTGGCGCTCTCACCAGTCCGTCCAGACTCGTTAACTCGCTGAAGAGCCGCACGGGCGCCGACCGAGCCGGCGACCGCATCCTCACACCGCGCAACCTCACCGAGACCGGCACCAGTAACACACCGAGACCGACTATGCCTAAAGCGAGGCGGGTACCCTTGAGAACCGTGGCTTCCAGGCATGCGGAGAAGGGCGTCTCATGGCAGCCGTTGACCTCGCCAGCTCCACGAATGACAGCGGAGCTGGCGAGGTCGACGGTCGAGGCCCCACCGGAGACGCGGGCGCTTTGCGAGCGCTCCGGTGCCGGCCGGTTTCCTAGGCAGCGCTCGATTCGTTGCCATGACGCGGATTTCTATCGGTCGGCGCCCCCGTTGGAACAACCGGTTGACCCGTTTCTGAGGCAGCGCTCGCAGAAGCGTGTAAACTCCCTGGTCAGCGGCGGTGAAAACCGCGAGCT # Right flank : CCCATGCGAGGCCGTCGTCCCACAGCTCGCCGACATCGTCTTACTGGACTCCAAACAACCTGGCGCTCCAGGGCTCTTCCGATTCGGGGGTGTGGTGGTGCTGGTTCGGGTTGGTGCGGTTGTCTTGTTTGATGTGGTTGACGGTGGTGTGCATGGTGCCGGTGTGCCTGCGGTCGAGAGTTGTCGGCGTGAGCGTGGTGCTTGAGATCGGGGTTTTGGCCGGTGTGGTGCGGGAAAATCGGGGTGATTATGGTCTGGGACGTTAATCCTGGGCGATGCTTGACTTTCGCGGGTAAATGTGCGGGCCGTCAGAACACGCTCCCCACGAGCAAGGCTCCACCCGATCTGCCAGACCCCGACGAACAAGACCAGCCACACCGCCGCAGACACCCAACGGCGCAAGTGCACCGCCTGCCGGTCCTCAACCACCCCACCGCACCCACCCGCACCGGGTGGAACCGAGCCAGCTGCGCTGGGTGAGTTCATCGACTGGGCAACCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCGGTCTTCAGGACCGGGCTCCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.60,-13.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 12 3547827-3547571 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025228.1 Actinomyces qiguomingii strain actinomyces sp. 410 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3547826 37 100.0 37 ..................................... GCCGTCCGGGTTGGTACGGCGCTCGGCGTACAGGTGG 3547752 37 100.0 36 ..................................... CTTCCGCCCACCACGTCCCGCTGATTTCGTCATACC 3547679 37 100.0 35 ..................................... ATCGCTCTCGCCGTAGGTCAGCGGGAACGAAACAA 3547607 37 91.9 0 .................................G.CG | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 98.0 36 GTCAGGAAGCACCTCGCACCTCCAGGTGCATTAAGAC # Left flank : ACGGGGACTGACGGGGGCGTCGACTCGAGTGTCGACGCCGGGCCACCGTACCCACATGCCCGCCAGGGCTGCCACCCCAAATCATCCGCCTGTGGAAAACCCGCCATCCCGAGCGATCTGCCTGTGGAAAACCCGTCCCCAACCCGCACGGCCCACACCTCCGCAGCGGACAACGGCGCGTTACTTGTTCCGGTTTCGGCGCGCGACTTGTGGTGGTCTCGGTGGCGGGAGTGGCTGGTGGTGCTGGTGGGGTGTGGCGGTGAGGTTGCGATTTGGTCTACGGTACAAAGTTTGGTGCGTTTTGACCCCGACTTTTCCGCATGACTTCGTTGAAAGTTGGTGGCTGGAGGGGTCTGGAGGGGTGTCGGTGGCGCTTGGCTTGTTTTCAACGAAAGGTGGTAGTTTTGGAGTGGTGCCAGTCGGTTCCGTGGGGTGCTTGCGGGGCCGGTGGCGATCTTGAGCCTGGAAGTGGCGGTATGGCGCGGTTTCCAGGGGTAGGG # Right flank : CGGGCGGTGTGTGAGGGCTGTTGCGGGGGCGCCGAGGGTCCCGCTGCCGTTTGGCGGGCGTTGGCTTGGCCAGGTGTTGGCTGGGGGCCTTGCTTCGGGGGCGTCGGGCGCCATGCGATCGAGACGGCGAATCGCTCTCGGGGGCTGGCATCCACGGCTTTGCACTATGGTTAGTGCATGCTTAGTCAGGCGGTACAGCGGACCCTGTTCGTCCCGCTGCTCGGAAGGGCACGTGCGGCACGCCTATGGCCGCACTGTTTTGAGGACGCCTGGGCCCAGGACCTCGCCCTACGCCTGACCGCACGCACGCCCGAACTTGCGGCGGCGGACTTGGGCGACGTCCCCGCCGCCATCTACGCCCTGCGGCATCGGGCGGCAGTAACCGAGGTACGCAGGTACCTTCGGGGCCACCCCGGCGCCGCCGTCGTCGACCTGGGCTGCGGAATGGACAGACTCGTGGACGATGTGGACGACCCCGCGGCGTGCGTCTACTGCCTGGA # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGAAGCACCTCGCACCTCCAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 13 3556640-3556239 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025228.1 Actinomyces qiguomingii strain actinomyces sp. 410 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3556639 37 100.0 35 ..................................... AGGGATACAATGAAGACAAAGACACAGGCGGCAAG 3556567 37 100.0 35 ..................................... ACTGTCAGCAGCACTGAGTCCGAGTACGACATGCT 3556495 37 100.0 37 ..................................... GAATGAGAGCCACGAGCCTGCGTAGCTCGCTAGTGAA 3556421 37 100.0 35 ..................................... CTCGACCGGTCTTCTCGTACTGAGCCCACCCGGAG 3556349 37 100.0 37 ..................................... TCCGCGGCAGACCACGCAAACGTCACAGCATTAGCTA 3556275 37 97.3 0 .................................C... | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 99.5 36 GTCAGGAAGCACCTCGCACCTCCAGGTGCATTGAGAC # Left flank : TCGGGAGAGGCCGTTTCGGGAGGGCGTTTAGAACGCCGGTTCGGGCTCTACTACGCCGGTTCGGGGACTACTACGCCACTTAGGTGTTGGTTGAAGGCCTCCAAGGCCTTCAACCAACACCTAACCGGAGTACCCAACGGTGAAGTGGCGTAGTAGTCGCCAGGTGGGGTGGGCGGGTGCTCGCGGTGGTGGTCGTTGCCTGTGAGCTGTGGTGATGGTGGGGCGGGTGTGGTGGGTGGTGCGTGGGCGGAGCGTTGTGGTGAGGTTGCGATTTGGTCTACGGTACAAAGTTTGGTGCGTTTTGACCCCGACTTTTCCGCATGACTTCGTTGAAAGTTGGTGGCTGGAGGGGGTTTGGGGGGTGTCGGTGGCGCTTGGCTTGTTTTCAACGAAAGGTGGTAGTTTTGGCCTGGTGCCAGTCGGTTCCGTGGGGTGCTTGCGGGGCCGGTGGCGATCTTGAGCCTGGAAGTGGCGGTATGGCGCGGTTTCCAGGGGTAGGG # Right flank : TGCTTCGGTGGCATGGTCTGTGGAGCATTTGCTGGTTTCTGGTGCGTGTTTGGGTGGGGTGGCGTGCTAATGACATACTGAGACTGGGAGGCTTATTCACGGCACCGCCAGTCTCCCCATACGATCACGGCTTTTCCGCACAATCGCACGGAAAGCACAGGAATTCCGCAGTGGTGGGTCGCCTCTGTGAACAACCCCCGGTGGTTCCAGTGACTCTGATGTCGTACCTCCTGGTGGTGCGGGCGCGTATACCACTGCCTGGGGGCGCAGACTGTGGGCAACTGGGTTGCGAAGTGCAGAAAGCAGCACGCCGACGCCCGGGAGCAGAAGAAAGCCGCGGGTGTAGAGGAGTTGGCCCGGCTGAAGGCGGAGAACTACAAGCTTCGGATGGAGAATGAGTTCCTAAAAATGCGGCGGCCTTCTTCGCGAAGGAACAGCCGTGACCACCAGGTATGAGCTGATCCGCCGCGAAGAGGGCAACTACCCGATCGCCTGGATGT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGAAGCACCTCGCACCTCCAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 14 3814691-3815091 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025228.1 Actinomyces qiguomingii strain actinomyces sp. 410 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3814691 37 100.0 37 ..................................... ACAACACTCCCTACCTGGTAGAGGTAAACACCGCCTA 3814765 37 100.0 36 ..................................... CTTCCTGGGCGCCATCAGCGCGGTCGAGGGCGTGGA 3814838 37 100.0 34 ..................................... GTTGGAGGCGCAATGGGACCTGGCGGCCCTTACT 3814909 37 100.0 35 ..................................... CTGGCCCAAGACCAGGTTTCGATCTTCAATTCCGA 3814981 37 100.0 37 ..................................... TTGAACAAGACAATAAAGAGAGCGGCTCGCGCTTTTT 3815055 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 100.0 38 GTCTCAATGCACCTGGAGGTGCGAGGTGCTTCCTGAC # Left flank : AGATGACCGCCATAACGGCGCGGGAGGCGGCGTCGCCACCGCCGCCGTAGCCGGCCTCGGACAATACGCGCTGGGCGCGGGGGTCCATGGGGTTGCCGGCCTCCTCGTCGGAGACGCCCGCCGAGGTGACCGCAACGCCCCCGGGGTAGGAGGGGATGCCCGCGGCGGCGAGCCGGTCCACGAGTACGGCGTGGGCCATGGCAGAGCGGCAGATGTTGCCGGTGCACACCATGACGACGCCGTAGGGGCCGGCCGGATCATGCGGCGCGGGCAGGTCGGGGCCTGCGAAGTGGGTCGGCGTGTCCGGGGCGGCGGGCTCGGTGGGGGCCGGCGTGGGGCCGGAGATCGCGGTCATGGCAGGAGCCTGGCCGAGTCCGGGCGGGGTTTCAAGCCGGGGCGGTTTGCTCCGGCGGGCAGGGGGCACGCCCGGGGCAGGAACGTCGACCGATCTCGGTGGTTATTTCAACCGAACTCGGCGATGGGGAGGCGTGCGCGCCTCC # Right flank : CCCCTACCCCTGGAAACCGCGTCATACCGCCACTTCCAGAGGCCAGATCGCCACCGACCCCGCAAGCACCCCACGAGACCGGCTAACACCACCCCAAAACTACCACCTTTCGTTGAAAACAAGCCAAGCGCCACCGACACCCCCCAACCCCCCTCCAGCCACCAACTTTCAACGAAGTCATGCGGAAAAGTCGGGGTCAAAACGCACCAAACTTTGTACCGTAGACCAAATCGCAACCTCACCGCCACACCCCACCAGCCACACAAGCCACACCAGCACCGCACGCCACAGCCCCGGACACCACCCACCTACCCCCAGCCAACACCACCGACCACCAACACCCCGCAAACCCCTAACAACCCACCATCCAGACACCGACTTTGCCGAGCCCCTGCCCGAATCCGGCGACATCACCCCGGCACACACCAGGCAAGTCATGGCACGCAGCAGCGTCATAACACCCGGCCCCGGCGGCAGCGTCGAATTCAGCGCGGCCGCCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAATGCACCTGGAGGTGCGAGGTGCTTCCTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //