Array 1 347924-348556 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFMK01000017.1 Campylobacter jejuni strain isolate_W7 NODE_20_length_492643_cov_61.704479, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 347924 37 100.0 35 ..................................... ATTTCAAGATTTATACTTTTATCATTACCTTTGAA 347996 37 100.0 39 ..................................... TTAGTGAGGTAGCTTCTAACCACCTCATCTTTTTCACCA 348072 37 100.0 40 ..................................... TCTCAACGTACCATTACTTATTTTATCTGCATATTTTTGG 348149 37 100.0 36 ..................................... TTTAAATTGGTTACTGCCAATAAACACTGGACTAAA 348222 37 100.0 34 ..................................... TACATTGTAACAGACTATCCAAATATTTTTTTGT 348293 37 100.0 37 ..................................... ATAACAGCTCTTGTATTAGTTACACCCGGTACTCCTA 348367 37 100.0 40 ..................................... TTTTTCATTGTATGGTCTATTATCCTCTCGTTAGACCTTT 348444 37 100.0 38 ..................................... GTAACCTCTTGAATATCTTCTTGGCTTTCTTCATCAGG 348519 37 94.6 0 ................................C.G.. | T [348553] ========== ====== ====== ====== ===================================== ======================================== ================== 9 37 99.4 38 ATAAATACAATATGACCTGATTAAAAGGGATTGAAAC # Left flank : TTTTTTATGCCAAAAATGCATAGAAAAATCCTTTATACTACACCCTAATAAAGACAAAAATGTTTTTACTCCAGATAATGATTTGTTTTTTTAATTTGCGAACTTTTTAAGCATTAAAAGCTTGAATTTAAAAACTATATTTTTAAAATGACTTCGTAATTTTGTGTTTTTATGTATTTTAAAAATACTTTTGCTAACTTTTATAATTTTTTAAGTTTTTACTGCTGAAAATTTAGGCATTTGCAAACTTAAAATTTCCAAAAAATTCACAAAATGTGGTTTTGTAAAATTTCCTAAAAATATTTGCGAACTTTTTTGATATTTAGAAGTATTGAAATATAGCCATTTTAAGCAAAAATTAATCAAAAACATCCTTTTTAAAAATCGTAATTAACCCACATTTGCCAACTTTTTATATACATAACTCAAATGATTATTACACCGGTATTTATAAAAAGATGTTATAATCTCATATCTTTTTAAACATGCAAAATTAAGCT # Right flank : CACAAGCTGTCATTTATTTGTGGTAAATTTTTGTAAAAAATAGGGAGGTTGCATAAAAGTAAATGTAAATTAAAGTAAAATATATAAAATTTAAAAATTTATAACAAAAGGAAAATACATGTTTTTAAATTTACTAACACCAGAAGAAAAAATTTCATTTTTAGAGATAGCACATCATTTAGCTCATAGCGATGGTAGTGTTTCAAATGCTGAGTCTGTAGTTATTAGCGGGTATTGTGCTGAAATGCAAATAGCAAATATAAGCTATGATGATTCTAAATTTGATTTAAGATCGACTTTAAAAAATATCAAATCCTCTCAAAGTCAAAAAATCATTTTGCTAGAAACTATGGCGCTTGCTATGGCTGATGAACTTACGCATTTTGAAGAGCTAGATAAAGAGGAAAAAAGTGTTATCGAAGCTATGCTAGAAGAGTTTGGTTTGTCTAAAAATTTAGCTATTGTGTATGCAGAATGGACTAAGGCTGTATTGTCTTTAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAAATACAATATGACCTGATTAAAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 732690-732257 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFMK01000006.1 Campylobacter jejuni strain isolate_W7 NODE_21_length_926511_cov_60.264988, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 732689 36 100.0 30 .................................... AAAGATTTTTTATATAGTACTGATTTCATT 732623 36 100.0 30 .................................... TTAATAGCTATCCAAGCTTCAAATGAATAG 732557 36 100.0 30 .................................... CTCAGGTTTTGGGGCTTCAAAATCGAAAGG 732491 36 100.0 30 .................................... TCGCCCTTAGTCCATTTAAAACCTAAAGCT 732425 36 100.0 30 .................................... TATTGCGAACTATATTATATTTCCAACCAA 732359 36 100.0 31 .................................... TATTTATAATGAAAAATTTAACACCAACATA 732292 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 7 36 100.0 30 GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT # Left flank : ATAGCAGCGCTAATCCCTGCTTTTTTTATTTTAAGGTATTTAGGCGTAGAAACTTTAATCTTACTTGCTATTTTACTTTTTTTAATCTCTATAAAAATCATCGATCAGTATGAAAAACAAACAGGCAAACACGATGATAAGCATATTGTAATAGATGAGGTTGTTGGGGTGTTTTTAGCTTTGGCAATTTGCGGACAAAGTGTTTTTACTTTTTTACTTTCTTTTGTTTTGTTTAGATTTTTTGATATCACAAAACCATCTATCATAGGTAAAATCGACAAAAAAACCAAAGGCGGTTTAGGTGTAATGCTAGATGATGTTTTAGCAGGAATTTTCGCAGGATTATTTAGTGCTGTGATTTATGGAATTTTACTTAAATTTGATCTTTTATGGTTTGATATAAGCATTATGGAGATATTTTAGCTTCATAAATTTGTGAAGCTATTTTCTAATTTTCTTTAGAGTAAAATAACAATAATTCTAATTGTATTTGCTATACG # Right flank : TGACTTTTATCAAACAAAGAAAACTAGGTGTTTTTTCTACAGAAAAAAACCTAAAATATGTTATAATTCTTGCTAAAGAAATTTAAAAAGAGACTAAAATAAGTGGTTTTTGGTCATCCACGCAGGGTTACAATCCCTTTAAAACCATTAAAATTCAAATAAACTAGGTTGTATAAACTTGGTTTTTTTCTTTTCTTTGTTTATTTTTTCATTACTATATTTAAAATCTTTACTTTTTTCATCATATTCAAATAAAACTAGATTTTTATCATCATTCATTTTTTCATTAAAAGAAACCCCACCTAATAAAATTTGCATATTATCAAATTGTTTTTCTGTTATGGTTAAAACTCTTATATTTCCATAAGGTGGTAAAATTTTCTCTATCGATTTTATCGTTGTTTTTGCCGAAACCGATCCTTTACAAATTTTCACATACACACTAAATTGCATCATGAAAAATCCAAGCTTTATCAATGAGTTTCTAAATTTATTTGCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.78%AT] # Reference repeat match prediction: R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //