Array 1 65478-65237 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPUJ01000003.1 Eggerthella lenta strain AB8 #2 NODE_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================== ================== 65477 34 94.1 35 ......T................G.......... TCGATTGGCTCAAGGCGGCAGACCCGAAGCTTGAA 65408 34 91.2 34 .........C..................C...G. CTCTACGGGATCGAGCCGGTCAAGGCGTCCGGCG 65340 34 100.0 36 .................................. TGGTATCGAAGTCACTGCGCCACAGCCATGCCGACG 65270 34 88.2 0 ..............A.A..T...G.......... | ========== ====== ====== ====== ================================== ==================================== ================== 4 34 93.4 35 GTCGCACCCTCATGCAGGGCGCGTGGATTGAAAT # Left flank : GACTGCTATATTCTTGAGTGAGGATAGCCATATCGGCCTGATCATACCAGGATTCCGCGGCGGCCATGTGCGCGCTGCTTGCCGTATCGGGCGGCTTGTCATCGGCCGAATTTGCACAAAAAGCGTCGACGTTCGATGTTGTGAACGCTCGCGCTTCTTCTTGCCCGCTTGTTCGTCGGCGTTTTCCCTGCACGTTGATTGCGGGGGAGGCTTTGGCTGGGGCGATGGTCGAGCAAAGCATCCAACGTCGGCGATTTTTGTTCAGGAGACGCCCTTTTCGTTGCAGTCATGATGACGGCAGGGCCTTCTTTGCGAAAAGCGGCGGCGGAGGATGCTGCAAATTCGACTGAGTGCGAATCAAAGGCGAACATGATCGATGCGGGAGGTTCGCACCCGATGCGGGATCGATTCGATCGTCGAGGTTGAGACAGTGCGGTTGGCTGCTTGCACGGAATGCAGGATATTGTGCTCGATTCCTTCTCTATGCCATGATCGTTGCG # Right flank : CGGTTTCGGGCCACTCCGCTCCGCCCCTTCCGCTCTTCGTGTGCAGCAAAAACGAGGTTTTGGCAGTCTTGACCGCTTGGGACGACGTGTTTTCGAGGTCGGGTGCCGTGTTTCCGGGGCGCGGTCGAGTGTCATCTGGGGTTTTGCCGCGGTGCCGTCTCGGGTGCGAGGACTCCTCGTGCCAAAACCTCGTTTTTGCTGCACATCGCCTTGTGAAAACGTGCGGCGGGGCATTTTTCAGGCAGCTGTGGGGGCGGGTTGGGCGCGAAACGGCTCCCATGACAATCGCAAGGCGGCTTCGACCTGCTTTGACGCGCCTTATCGCCTCATGCGGTCGTATGATCCCAGGTGACGAAATCCACGTGCGACCGTCGATACCCGACTCGACCGCCGAAACTGTCATAGGAGCCGTTTCGCGTCCAACCCGCCAACCGCCCGCCAACCCGCCAACCCGTCGACGCAGCGCCTCCCCGCCATCCCTCGCGCAGCTGCGACAGCGC # Questionable array : NO Score: 6.72 # Score Detail : 1:0, 2:3, 3:3, 4:0.67, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCATGCAGGGCGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCATGCAGGGCGCGGGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 133716-137510 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPUJ01000006.1 Eggerthella lenta strain AB8 #2 NODE_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 133716 33 100.0 35 ................................. AAGGGGTTCGAGGCGGGCGTGTCGGTCCTCAGCAG 133784 33 100.0 36 ................................. GAGCGGGACTGCGCCGAGGCTGTCTACGACGCCAAC 133853 33 100.0 36 ................................. TCGCTCGCAGCAGTGATGCTATGCGTGCCCGAACTC 133922 33 100.0 32 ................................. CCAAGCAACAGGTCTCCCAAGCCGAGATCGAC 133987 33 100.0 36 ................................. CAGCGGCGCTGGCATGGATTATTGCGACTTGGGCAC 134056 33 100.0 34 ................................. CCGTTTTGTCTGCCCTGGGACTTGGTGGAGCTTG 134123 33 100.0 33 ................................. CGAGGAGTTTCGCCCCTATCGCGATCCGTCCGC 134189 33 100.0 35 ................................. TTCCTGCACGCAGAGGGCGGGCCGCGCACGTGGTG 134257 33 100.0 33 ................................. TGCACACCCTTGCCGAAGATGCTCAGCATCGGG 134323 33 100.0 35 ................................. ACGTTGACCTACGCTGAGAACATGCAGGACAATTC 134391 33 100.0 34 ................................. TCGGCAAATCTGGGACGCTGGAAGCCGCTGAGGC 134458 33 100.0 35 ................................. GAGCTCAAGCTCAAGAAGTGGCGCAAGCAGACCTC 134526 33 100.0 36 ................................. CGGATCGTACAACACGGCAAGCGCGCTGTGGGGCGC 134595 33 100.0 37 ................................. TTGCCGACGTGCTGGACGGCTACAACCGCACCCACGA 134665 33 100.0 33 ................................. TAAACGAACTTGAACAGACGCATTTTGATAACC 134731 33 100.0 32 ................................. GAGTTCGTTACCGACACGACCGGCCTCATCGG 134796 33 100.0 34 ................................. GAGCTCGCCTGTGTACCCGTCGTTGGTGACGATG 134863 33 100.0 34 ................................. ACGTTGCCCGGATCGAGCTTGAGCGCGCGCTCGA 134930 33 100.0 34 ................................. ACGTTGACCTACGCTGAGAACATGCAGGACAATT 134997 33 100.0 32 ................................. AGCCCTCGCTCGCAGCCTCGTAGCGAAGCCTG 135062 33 100.0 34 ................................. AGCATCTCGAATTTCGCGGCGAGCGATTCGTTGC 135129 33 100.0 35 ................................. AAGGCCGCCAACGCCAAGTACAGCCTGGAGGAGAC 135197 33 97.0 33 ........T........................ AAAGCAGTCATCACAACGAGAGAAAGGGGCATC 135263 33 100.0 34 ................................. ACGTCGTGTCTGAGCATCGACATCACAACGTCTT 135330 33 100.0 32 ................................. ATTGCCGTTTTTCAAGGCTGGTAGCAAGCAAG 135395 33 100.0 34 ................................. GTGCCGGCAGCTCCCGCAGCAGCGGCCCCTGCGG 135462 33 100.0 33 ................................. AGGTACGCGCGCGCCCTTCTCGGTCTTGTAGTC 135528 33 100.0 35 ................................. TCGACGACGGCCCTCACGTCGTCGATGGTGCGGCC 135596 33 100.0 34 ................................. TATCACATGGAGCGGACGAGGTTCTCCGCGCGAG 135663 33 100.0 34 ................................. ATCTTGGGCGTGCCGGGAGCGGGCAAGAGCTTCA 135730 33 100.0 34 ................................. ATGGCGAGTACTTGGACGTAGTTGACGGTCGCCG 135797 33 100.0 35 ................................. GACTTGGCGTCGGCCGCGGCGCCGGACAGCGCCTC 135865 33 100.0 33 ................................. GACAACGCGATGGCCAAGGTATCGACCATCGCG 135931 33 100.0 35 ................................. CGCTCGCAGCATAACGAAACGTTGGCTACAGCCGC 135999 33 100.0 35 ................................. ACGCACTCGTAGACGTCGGCCGGGGTGTAGCAGTC 136067 33 100.0 36 ................................. AATGAATCGATCAAGCGCGCCAACGGCGAACTCACC 136136 33 100.0 34 ................................. GAAACCGTGCGCGACGGCGGAAGCAAGCTGGACG 136203 33 100.0 33 ................................. CGCGCCACAGAAGGCGCACCTTGCGGGTATCGG 136269 33 100.0 33 ................................. GGAGAAACATATAAAAAGGACGGTGTAATCTCG 136335 33 100.0 35 ................................. CAGTTGATGTCTTTTCGCAGGTCGATGGCGCACGC 136403 33 100.0 34 ................................. AAGCCGACGAATACGCCGGCGAACGCCATTCAGC 136470 33 100.0 25 ................................. AGGCCCTGTCGGCCCGGTCGGCCCT Deletion [136528] 136528 33 90.9 34 ...GGC........................... ATGTCGGCCTTGGTGAACTCGGACAGGTCGAAGC 136595 33 100.0 33 ................................. ATGCTACTAGACGATTTTTTTGTTCCGAAATTG 136661 33 100.0 35 ................................. ATGATGACCACCGACTCGTCCGCGGTTCCGTAGAA 136729 33 100.0 35 ................................. TAACAGACCGAAGCCCGTCCGGGCGGGTCGAATAC 136797 33 100.0 35 ................................. CATGTGTTGCGTCCTACCGCGTCACTGATGATGCC 136865 33 100.0 34 ................................. ATCGTGTGCGGGACGAACGACGACAAGCTGGACG 136932 33 100.0 34 ................................. GAGGACGGTGTGGATCCATTACGACATCACCGGG 136999 33 100.0 37 ................................. GAAAAGCTGCACCGGCGTGCCGACCGTGATGCCGTTA 137069 33 100.0 36 ................................. GGCACTGACGTGAACGAAAGCGTCAAGGCTGCAAAC 137138 33 100.0 33 ................................. CCCACCGCGATCACCCAGAACGTCGAGTACCTG 137204 33 97.0 33 .............C................... ATGTCGGGGAAAAGGCGCGAACCCATGTAGGCG 137270 33 100.0 38 ................................. CAGGTAGGCGTTGACGGCCTTGTCGTTGGCCTCGGCCA 137341 33 90.9 36 ..T...T...................G...... GGCACCGCGGTGTACTCCGTGCTCGAGAACGCGCGG 137410 32 93.9 34 ..............-.................C TGTTCGGGTTGGCTGGCAAGCTGAACGCTGACAC 137476 33 75.8 0 .....GTT.A..T.....C.C..........G. | T,C [137480,137492] ========== ====== ====== ====== ================================= ====================================== ================== 57 33 99.0 34 GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Left flank : TGCGCGGCGATCTAGATGGCTACCCGCCGTTTCTATGGAAGTGAGATGGTTGGCATGCTGACAGTGATTACCTACGACGTGAATACCGAGGATCCGGCGGGCCGACGTCGCTTGCGAAAAGTGGCGCGACATTGCGTCAATTACGGTCAGCGTGTCCAGAACTCAGTGTTCGAATGCGTTGCCGATGCTGCGACGATGGTTCGTATCAAGAGCGAGCTCGTCGAGCTGATCGATCCGGAGAAAGATAGTTTGCGATTCTACAGTCTTGGAAGCAAATATGAGACGAAGATTGAGCATGTAGGTGCGAAGCCAACGTACGAAGCTGAAGGGTTCTTGGCATTGTAGGACCATGGTGCGAGCACGAAGCTCGCATATGACATACGTGAGGTTCGCACCAAATAGTGTGACATAAAGATGCCTGACGCGCTTGTTGCGTGTACCTTGTTTGTCTAATGACACTATATGTTGATCGAAGCAGTAAATTTGCACATAATATTGCG # Right flank : TCGCGCGCAGCTGTCGTGGTACGGCCGAGGCGTGGTCGGTCGTACCCCTCGCGGGCGCGCGGGTAGAAGCAGGGTATCCGGGTTGAAATCGAGCAGCGTTTCGGCAGGTTCTGTCGCTCTCAAACGAGGGGGTAACCGATCCTTGCCGTCGCTTCCTATCGAGACGCGGATTGATTCGCTGATTCCGAGTTTTGCTCGTCGGACGCCTGCGCCGAGTTGTGAAAGGCGCAGGCGTCCTTCGGATCGCTACTCCACCACCAAATCAACGAGCTCAAACGTCGTGCAGTCCACCAGCCCGCGATTCGTCAGCCGCAGCTCGGGCAGGCATGCCAGCGGGATCAGGGCCATCGTCATGAACGGCGACGGCATGGTGCAGCCGATCTCGGCCCATGCGCCCTCCAAGGCATGCACCTTCTCGCTCATCGTCACAGCGTCGAGCGAGTCCATCAACCCGGCGATGGGAAGCTCCACCAGCCCCAGCACCTTGCCGTCGGCGACCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.10,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //