Array 1 174090-172192 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDTG01000004.1 Salmonella enterica subsp. enterica serovar Infantis strain inss23 scaffold_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 174089 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 174028 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 173967 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 173906 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 173844 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 173783 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 173722 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 173661 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 173600 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 173539 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 173478 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 173417 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 173356 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 173295 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 173234 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 173173 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 173112 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 173051 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 172990 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 172929 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 172871 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 172810 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 172749 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 172688 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 172627 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 172566 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 172505 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 172444 29 100.0 11 ............................. CGGCCAGCCAT Deletion [172405] 172404 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 172343 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 172282 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 172221 29 93.1 0 A...........T................ | A [172194] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 191988-190372 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDTG01000004.1 Salmonella enterica subsp. enterica serovar Infantis strain inss23 scaffold_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 191987 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 191925 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 191864 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 191803 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 191742 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 191681 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 191620 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 191559 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 191498 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 191437 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 191376 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 191315 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 191254 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 191193 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 191132 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 191071 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 191010 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 190949 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 190887 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 190826 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 190765 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 190704 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 190643 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 190582 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 190521 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 190460 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 190399 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //