Array 1 3945-5036 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NVZK01000032.1 Neisseria meningitidis strain MRSN431033 MRSN431033_contig00032, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
      3945	    36	  97.2	    30	........G...........................	GTTTCTTCCCATATACTGCTGTTCAAACCG	
      4011	    36	 100.0	    30	....................................	CTTCCGTGAGATACATTTCCCAATCTTCTT	
      4077	    36	 100.0	    30	....................................	TGATTTGCTCGACAGGTGAATAGCCATAAA	
      4143	    36	 100.0	    30	....................................	AATTTAATACGGCGACCATCTCGTGCCAAG	
      4209	    36	 100.0	    30	....................................	TCATCAATCGCCCACTCAAACCCAAGCATA	
      4275	    36	 100.0	    30	....................................	CCGCAAAGCAGCCGAAAAAGCCGACAGGAA	
      4341	    36	 100.0	    30	....................................	TGACAAATAAAGCACGATTGTTGCAAAAGG	
      4407	    36	 100.0	    30	....................................	CCAACGGATAAAATTACGCCCAAGCACCTG	
      4473	    36	 100.0	    30	....................................	GTATTGAGCGTCAAGTACTCGCCATTCGAG	
      4539	    36	 100.0	    30	....................................	TGAAGGTTCGATAATTCGACCTGAAAAACG	
      4605	    36	 100.0	    30	....................................	TCACTCTAAAAATCCGATTCTACCACCGCT	
      4671	    36	 100.0	    30	....................................	TTGGCTCGTCTGCTGCCGTCAATCGTGCGC	
      4737	    36	 100.0	    30	....................................	TAGATTGCCTCATATACGCCGAGCGGGTAG	
      4803	    36	 100.0	    30	....................................	CAGGTCGTGCTGGAGCAGGCCGACGATTTT	
      4869	    36	 100.0	    30	....................................	CATACAGTTCATCTTCACCTGCAATCAGGG	
      4935	    36	 100.0	    30	....................................	TCTGCGGATTCGTACAAGTCATAAACTTTT	
      5001	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        17	    36	  99.8	    30	GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT	                              	       

# Left flank :   GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG
# Right flank :  TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.40,-0.90] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,0.68   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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