Array 1 8315-13113 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLRN01000035.1 Tetragenococcus halophilus strain YA163 sequence035, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 8315 32 100.0 35 ................................ CCCTAAGACAAATAAATCCAACCGTAAAATTTACC 8382 32 100.0 34 ................................ TATAACATTATATAATAATTGCCCTTTTTTTGCC 8448 32 100.0 36 ................................ AATAACTGCATTTGCAACTGTAGTTATTAGCTTAAT 8516 32 100.0 35 ................................ AGACTCTAAGCCATCTAAAATCGTGTCTTCTGTAA 8583 32 100.0 35 ................................ TCATTAACATTATCTCCTTTGTTTGCTTTGAACAC 8650 32 100.0 36 ................................ TAAGAACTGCTTACCAACTCTTAAAAGGTTGTTGGC 8718 32 100.0 34 ................................ TTTTATATGATCAACCTCTAATACCATGTCATGC 8784 32 100.0 35 ................................ GCGTTTTCTACTGCGTCAACGCGGGATTTGATATC 8851 32 100.0 36 ................................ GTGTAATAAAAAGCAAATTCGTTATGATAACCGGCG 8919 32 100.0 35 ................................ CCCTTTTTCCTATGGAAAGAATTTCAGAGGATCCG 8986 32 100.0 36 ................................ CGCATTAGACTTGAAATGAATGGTATTTTGAAAATC 9054 32 100.0 35 ................................ ATATTGAACAAATTTCCCACCATAGCCATCATCAT 9121 32 100.0 35 ................................ TATACCGTTGTTATTGCCATTTTCATGCTCACCAT 9188 32 100.0 34 ................................ TTCTAAATCAAAATAAGAATGGTAATTCCTCCCC 9254 32 100.0 34 ................................ TTCAAAATCAGTGTATTATACGTTACACAATATT 9320 32 100.0 36 ................................ TAAATAATTCCCTTGGGGTGTGGTGTGGTTGAGCCA 9388 32 100.0 34 ................................ ATCGTTTATGGTGACGAACTACAGCTACAACGCT 9454 32 100.0 37 ................................ TGCAAGTATTTTATTCAGTTTATTATCACGTGCTAAA 9523 32 100.0 34 ................................ ATTTAGTCGTTGGGCGAATCAAGCTTTTACAGTA 9589 32 100.0 35 ................................ TAAAAAGAAAGAAGAAGCAGAAAATATTGATGAGA 9656 32 100.0 36 ................................ TTTATTGCGGTAGTCTATCAGTTGAGGAAGCAACTC 9724 32 100.0 37 ................................ TAAAGATTTTATTTTACAAAATCTATATGACTTAGAT 9793 32 100.0 36 ................................ TTTAGATGAAGATGAAAAAAAGCAGGAAATTATAGA 9861 32 100.0 36 ................................ ATACATGGTTAACCTCCTATACGTACATCATTGAAA 9929 32 100.0 33 ................................ ACTATATTGCCCGATAAAATCCACTTCTTTAGC 9994 32 100.0 36 ................................ TTATAAGAAAGAAGTTGTTAGCCGTGCTGTGAAAGC 10062 32 100.0 34 ................................ TTTAATCTTAGTAAAAACCGAATAAGCATTCTGA 10128 32 100.0 35 ................................ ATTTTTTGTATATACGTCTAAATTATTTATTTTAT 10195 32 100.0 34 ................................ TTCGCTAAATGCAGCGTCTAACTGTCCTTTAATT 10261 32 100.0 36 ................................ AACAATATTCCACATCAAGTCCTTATATCGATAATC 10329 32 100.0 34 ................................ GTTAGATTTGATGGCTAAAGCTATGCATATCATG 10395 32 100.0 35 ................................ TTACTGAGTCCCCTTTTTCAAACTCATTGTTGCGG 10462 32 100.0 36 ................................ TACAATATCTTTTGTAGGTTTTGGACGGTTAAGACT 10530 32 100.0 35 ................................ TTGCTCAACTGTGATAAACTGGTTATCCTTGTCTA 10597 32 100.0 34 ................................ TTGATTATCTAAGCCACTATAAGCTTTATAAACT 10663 32 100.0 37 ................................ ACGTATATGCCTTGGTACCTCCCTTCGCTCACCACAA 10732 32 100.0 36 ................................ ATCTAATGGAAAATACGAATAATAGTTTCTGCCCTC 10800 32 100.0 36 ................................ TATTGTTTTAAGACAAATGATTGTTAAATATTATAC 10868 32 100.0 34 ................................ TTATTCCTCCTAGTAATTTGTTGCATCTTGCCAG 10934 32 100.0 36 ................................ TTTTAACATTTAATTATCCTCCAATATTGTATATAA 11002 32 100.0 36 ................................ ATCGTATTGGTCGTTGTAAATCTTGACTAGATACAG 11070 32 100.0 35 ................................ TTATAGGTATTGATAAAGAATCTTTTGAAATTAAA 11137 32 100.0 35 ................................ TCTAATATAAGTTTTGCCATTTATTGTAATGTTGT 11204 32 100.0 37 ................................ TGGGTCTGCGTCAACATCGTCCGAATCGTCCAAGCCC 11273 32 100.0 34 ................................ AACGTAGCCTCACAGGAATAAAACGTAGCTTTAA 11339 32 100.0 35 ................................ ATCTATTAAAATTTTGTTGCTTGCTCCTCTTTTAC 11406 32 100.0 34 ................................ TGTCATTTTAAAATCTAATATCATTTTATTTATC 11472 32 100.0 35 ................................ GGTATCATTCTTCCACCTCTTTCAAATCTCTACCG 11539 32 100.0 34 ................................ ATTTTATTTTCTCCTTTTTTTATGTTAAGTTATT 11605 32 100.0 35 ................................ TCCCGGGATATCAAGTAGTGTAAACGTTACGGACG 11672 32 100.0 35 ................................ ATCTTTATCATATTTCACATAATCAAAACTAGTTT 11739 32 100.0 35 ................................ AACTCTATCTATATCACTTTCTTTACTTTCGTATA 11806 32 100.0 36 ................................ GATAAAAAACATTTTTTTATCGGTCCCGCGGAAACC 11874 32 100.0 35 ................................ TCTGTGGAAAATCGTCACTGTATCAGCAGGAGCTG 11941 32 100.0 34 ................................ CGCTAGATGAAGATGAAAAAAAGCAGGAAATTAT 12007 32 100.0 34 ................................ ACTATCTTTACCCCCTTCTATGCGTTCTTGTATA 12073 32 100.0 35 ................................ ATGCAAGAATTACTCAAAGCTATCGACTACTGTAA 12140 32 100.0 36 ................................ AATATCTTGTAGATGTTGCAAATAAAGTTATCAAAA 12208 32 100.0 35 ................................ ATTTCTTAGTAAGTAAATGAACATTTGGCTGACTT 12275 32 100.0 37 ................................ CTTTATGATTTGCAGTAACGATTATGATTATGTCCTC 12344 32 100.0 35 ................................ GTCCATATGGTAAAGCCCTATGTAAAAAACTATTA 12411 32 100.0 34 ................................ AAAAGCCTGCTCAAAGAAGAAAATCCTTTTAAAG 12477 32 100.0 35 ................................ TTACTAAAGTCTGCAAAGGATTGGAAAGCCTTTAC 12544 32 100.0 36 ................................ AATTTCAGGTTGTCCAAAATCTTCGACTTGAAAGCC 12612 32 100.0 37 ................................ TTCCTTTGAAAGATTCGCCTTGATCCGGATGATACCA 12681 32 100.0 36 ................................ GTTAAAATCTTTGATCGTAAAAACTGATTATAAAAA 12749 32 100.0 36 ................................ GCCTTTTGCTAAAGTCGATAAATTTTTTGACCCTGA 12817 32 100.0 34 ................................ GGTTTTACCGTAAAGTACAGGAGTAAGAAAGAAA 12883 32 100.0 35 ................................ TTTTCTTGAGCAAGAAATGCGTAAACTTGAAGACG 12950 32 93.8 36 ......T............T............ GTTTAAAGCTTATGCTAGCCCGCCAAAAGTAGAAGA 13018 32 93.8 33 ......T............T............ TTTGGGTATCAAGGGAAACAAAATCTTATAAAG 13083 31 84.4 0 .........-C........T.A..T....... | ========== ====== ====== ====== ================================ ===================================== ================== 72 32 99.6 35 GTCGCTCTCTTCGTGAGAGCGTGGATTGAAAT # Left flank : CCAAAGCAATCCGAAATGATTTGCCAAGTTATCCGCCTTTTATGGCGTAGGGGAGAACACTTATGATGGTTTTAGTTACTTATGATGTGAATACAGAAACAAAACAAGGAAGAAAACGTTTGAAACATGTTGCTAATTTATGTGTTGATTATGGCCAAAGAGTTCAAAACTCTGTTTTTGAATGTTCAGTAGTACCAGCAGAGTTTGTGGAATTGAAAGGAAAATTGGCCAACGTAATCGATCCGGAATTGGACAGTATTCGATTTTATTTACTAGGAAAAAATTGGCAAAATAGAGTGGAACAAATGGGAAATAATGATAGCTATGACCCTGATGAAGATGTTTTATTGTTGTAATGTTCATCGCGAATCGAGGTTACTCATAAATTATTCAGTCGGTTCGCACAAAATTAGCGCTATTTAGTAGAAACTAGTTGTTTTATTCCATTTAATAAATCATTTTCTGAATTTAAATTAGTGTGAAACCGCGTTTTTCCTGCG # Right flank : TAGTATAATAAAGATTTTGGAGTGTTAGATAAATAAAAAATTGTAGGAAGTAATAAACGAACTTTTTGCACCATTTTATCATTCCTAGTATAATAACTATGTTTTGGACGAAAATTTTAAATTAACCAGAATACATAGAAGATAGGAGCAATTCATAATGACTAAGAATTTTTGGGCAGAATTACCGAAGCCCTTTTTTATTTTAGCGCCGATGGAAGATGTGACAGATGTCGCTTTTCGTCATGTGATAAAAGAAGCTGGTGCGCCGGATGTTTATTTTACTGAATTTACCAACTCGGATAGCTATTGTCACCCGGATGGTAGGCAAAGTGTCCAAGGTCGCCTGACTTTTACAGAAGATGAAAAACCGATTGTAGCACATATTTGGGGAGATAAACCTGAATATTTCCGTGAGATGAGTCTTGGTTTAACAGAAATGGGCTTTAGCGGCGTTGATATTAACATGGGGTGTCCGGTTCGTAATGTGGTAAGACGCGGGA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCTTCGTGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.30,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //