Array 1 48116-46048 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFOA01000002.1 Acinetobacter baumannii strain 4300STDY7045861, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 48115 29 96.6 31 ............................T TATGATGCTGTAGCTTCTCAACTTATCAGTG 48055 29 100.0 31 ............................. ACCCTCGCCCGCAACAGTAGTTGCATTAGCT 47995 29 100.0 31 ............................. ACTACAACTCCTCCTGCAGATACGCCACCTT 47935 29 100.0 31 ............................. TGTGACCACCAGTGGAATCCAGTAAATTATT 47875 29 96.6 31 ............................T TACTAATCCACATTCTTCAGATACATATCTT 47815 29 96.6 31 ............................T CTATAAGTCATGAAATCAATTTCATGGCTTT 47755 29 100.0 31 ............................. AACTGCTTTTTTTGGGCTTCCTTCATACATG 47695 29 96.6 31 ............................T TGTATTTATACGGTTAATAAATCAGTACAAT 47635 29 100.0 31 ............................. TCTTAAGTTCGAATAAACGTACAAATGGGAT 47575 29 100.0 31 ............................. TAACGAGAAGCGTTGCGTAGACTTACAACTC 47515 29 100.0 31 ............................. AGAGCAACTAATTCCCCGGCTGTTACTGGTA 47455 29 100.0 31 ............................. TAAGAAGTGTGCTCATCAATCTGTGCTGAAG 47395 29 100.0 30 ............................. AAAAAGGCAGCAATTAAGCTGCCAAATCAG 47336 29 100.0 31 ............................. TATGATGAAGACTGAAAACGAGAAGGTTCGC 47276 29 100.0 31 ............................. AGATCTGACCAGCTAAAACATTCTGGTTATC 47216 29 96.6 31 ............................C GAGGATGATGTTGATTATGTCATTAAGAAGT 47156 29 96.6 31 ............................T AGAAGCAGAAAATATCCAACTCATTGCTACT 47096 29 96.6 31 ............................T TGAATGTCATTATCTTCAGTCGCAATGACAT 47036 29 100.0 31 ............................. CGTCCACGGTAGCGGCGCCAAGGCTGCCAAT 46976 29 96.6 31 ............................T GTTTTGCTAATTTATCAATATCGATTTTCAC 46916 29 86.2 31 ...AC........C..............T CTCAACTCATTGATTTTTTCTTCTCTTGCCA 46856 29 93.1 31 ...GC........................ TTTTTATTCCAAGGGCTTTTGCTTCTTGTGA 46796 29 86.2 31 ...GC......T................T TCAAATGATTTAATGAGCTTGTAGCCATTTT 46736 29 89.7 31 ...GC.......T................ CGTCTTCTAATGATGGACTTTAATCCAATAT 46676 29 82.8 30 A..GA.......TC............... TCTCACTGAAGATATGACCATCACTTTCTT 46617 29 82.8 31 CG..G........C..............T TTATAACCACCAGTTAAAGTATTGACTAAAA C [46612] 46556 29 75.9 31 ...GC.G...A..C.AT............ CAATCGGGGACGTGGTCAAAAAGATTATCAG 46496 29 93.1 31 ....A.......................G TGTTGATGTTGTTGTTCAGATCGTTTTTGGT 46436 29 79.3 31 ...GC....T..TC..............G ACATGCGAGCTTTCATTTAAATGTGTCATCA 46376 29 93.1 31 ....G........C............... TTAAAGCATTTTCATATGAGCCTTCCTCATT 46316 29 82.8 31 ....A......TGC..............T TCGGATCAGTCCAGTCATCATTCTCGTCAAT 46256 29 86.2 31 T..G........G...............T ATTATTGCGCGACAGAACGTATCAATTAATG 46196 29 86.2 31 ...GC.......CC............... GATCTATGCAAGATTTATTGGTCTACATTAG 46136 29 89.7 30 ...TG.......................C AAGCTGATGCTTCCTTATGGTTACAGTCAG 46077 29 82.8 0 .G..G...................AT..T | C [46072] ========== ====== ====== ====== ============================= =============================== ================== 35 29 93.2 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCAAGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGTTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTTATGCCAGTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTGAATCTTAAAAGAAAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATTTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACAT # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [46-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 53206-54614 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFOA01000002.1 Acinetobacter baumannii strain 4300STDY7045861, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 53206 28 100.0 32 ............................ TAATGAGCATGGCCTAGATTTGAGAGATGGTA 53266 28 100.0 32 ............................ TAAAAACCTGTTCAGCTACTACAAGTCTGCTA 53326 28 100.0 32 ............................ ATGTATTTCAACATCTTCAACAGAAAGCTGAA 53386 28 100.0 32 ............................ GTGTACCCTGTTGTGAGAACGCATAATATTTA 53446 28 100.0 32 ............................ TGATCAAATCGTGGGGCTGTCCAGTACTGCTT 53506 28 100.0 32 ............................ TTAGTCATATTATAAGTAACTGTAGAATTATT 53566 28 100.0 32 ............................ TGGCTGACCTGTAATGAGTTTAATTGGCATTA 53626 28 100.0 32 ............................ AAGCATTTCAGTTGCACCAAGATGAATACTTT 53686 28 100.0 32 ............................ ACGCTTAAAAAAGCGTTCCCCAAAGCCAGTGG 53746 28 100.0 33 ............................ CTATGGGGGAGAAAATTATATTAGCTAAAATAT 53807 28 100.0 32 ............................ TAAACAAAACAAAGTAACGGCTGTAGGTTTTG 53867 28 100.0 32 ............................ AGATCGCAAACGCTGTTAAAGCCGGGGTTTTT 53927 28 100.0 32 ............................ AAAAGTGACCTCAAACGACCGAACCATATGAA 53987 28 100.0 32 ............................ ACAACCAATCAAGGTTAGTGAGAAAGAAGTGT 54047 28 100.0 32 ............................ TTGTTTGTAGTGTAACGGTTAGCTTATATGGT 54107 28 100.0 32 ............................ AGTATCTATATATCCTGATTTACCAAGTATAT 54167 28 100.0 32 ............................ GCAGCCGCATAGCCCGCTTGCAGTTGGTTTAA 54227 28 96.4 32 ............C............... TATATGGCCTATGGAACTATCCATAGGCCTTT 54287 28 100.0 32 ............................ AGCCTAATTGCGCACGTCCTTGTTCAACAAGT 54347 28 100.0 32 ............................ TTGAATTGGCTAAACCTGCATTGATTGCATGT 54407 28 100.0 32 ............................ AAATTGGGTACACCAATCATCTGGCAGGAAAG 54467 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 54527 28 92.9 33 ............CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 54588 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.0 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //