Array 1 146039-145767 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTST01000002.1 Leptospira santarosai serovar Grippotyphosa strain M72/6-6 Contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 146038 28 96.6 32 ....................-........ AAAACGGGAAAGAAGAAGGTAAGAAATCAGGT 145978 29 100.0 32 ............................. TGATTCAATACGCGACCGGTCTTCCCGCTGAT 145917 29 96.6 32 .............A............... TTTCAGCCATTGTGGCAAAATCAAAAATTGGC 145856 29 100.0 32 ............................. GGGAAAACCTTAGACACCCGACAAAACGTTTT 145795 29 82.8 0 .......................ATT.AA | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : TCCTTGAATATGGCGGTTTTATTTTTCATACCGATCGTTTTTGTGAACTAAAATACAAGATCAACCTATTTCTATAAGAACCTGTCTCAAAAGAAACTCAATGCCTTCGTTCTCTAAGGATCACTCAAAAGAAACTCAATGCCTTCGTTCTCTAAGGATCACTCAAAAGAAACTCAATGCCTTCGTTCTCTAAGGATCACTCAAAAGAAACTCAATGCCTTCGTTCTCTAAGGATCACTCGGGGAAACTCAATGCCTTCGTTCTCTAAGGATCACTCAAAAGAAACTCAATGCCTTCGTTCTCTAAGGATCACTCGGGGAAACTCAATGCCTTCGTTCTCTAAGGATCACTCGGGGAAACTCAATGCCTTCGTTCTCTAAGGATCACTCGGGGAAACTCAATGCCTTCGTTCTCTAAGGATCACTCGGCAGGTTTTGGGACACGCTGTAAGTGAGTTCTAAACTGACATAATATCTCAAGGTCCTATACAAATTTTTAGC # Right flank : TTGAAAGTTTTTACAAGATAGAATCAACGAACGAACTTTAAATTTTCGACATTTACATTTTGGAAAAACTTCACCCATTCAAAGATAGATTTGAAAACGCAATCGAAATCCCAAAAAATATGCCTCAAACGTTTTTGTTCTATCTCGAAACGAAGTATCAAAACAGAAAACACCGTTCGAAAATCAAAAAGTTCGAAAAAGAGAACTTGTGAACCGAGGATAATGATGATTTACTGATTTACAACGCTTCGGAAATAATGAAATTGATATGCGAAATTCGATTGTCGTTTTAATTTTTATCGTATTTACGTCTTTCGACCTATCGGCGAAAACCTCCGATTTAAAAGGGGAATGCAAACCGAAAGATTGGATCTGTATTCTTACCCGCAACGAAAACGACAAGGTAGAATTTTACATTCAAAACCAAACACCTTCGGGAGAATATCCCTTCATAATCCATTTTGACTTTACCACTTTGGATAACTTCGAATCGGACGTCC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 34394-34059 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTST01000023.1 Leptospira santarosai serovar Grippotyphosa strain M72/6-6 Contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 34393 29 100.0 32 ............................. GAAACGCCAAAAGTTTATGACGGCCGCAGAGA 34332 29 100.0 32 ............................. CCTATCCGATTCTGGGAAAAAGGTCCTAATTG 34271 29 100.0 32 ............................. GAGCGGGATCCGTGAAGCGGGATTGTTCTATG 34210 29 100.0 33 ............................. TTCCTCCTGGCACCCTGGATTCTGTCCTATTTC 34148 29 100.0 32 ............................. TCCAAATATTCATGGATGTGGAGTGTGGATTA 34087 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================= ================== 6 29 99.4 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : ATAGTAAATTACTTAAGAGGATTATTCCGGATATCAAGGAGTTGATTTATGGTGGTTCTGATTTTGGAGAGAGTGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAACTGAAACCGGGCGTCTTTGTGGCGTCCATCAACGCCAGAGTTCGAGATCGGATCTGGAAAAAAATTTCCGAAGAATGGAAGTCGAACGCGATCATGTTGTTTTCGAGCAACTCGGAACAGGGTTACGGCATCCGTTCCCACGGCGATCCTTCCCGAGAAATCATGGACTTTGACGGTTTGCTTTTAATGTCCAAACCCGATTCCAAACGCGACCGCTGGGACGATTCCGATCTTTCCAAAAGCTCCGAAGTCGACGGTTCTCCGTTTCCGGATCTCAGTAGTTTTTTCAACGAAAAGGCGAACTCCCTTCTTTTAGAAACAGACCTTTCTAATGAACCTTAGAGGCAAATATACTTCTTAAGATTCCTATACAAGTTTTTAGC # Right flank : GCTGCGCACATCCGAATGAACCGCTTCCCACCATACGAGCGCCCTAAAAAAAGGTATAAAATGAAGAACGTGAGTTCGGCCTAAGAAAATCGGGCCTGTCCCGAATGTGGGAACTCTTACAGTTTCAGTAAAGCTATCGAATGATAGGAACCGATTTCTTTTAAGATTTTGAGACTCGCTCCAAGCATCATGAATTCTAAGCTACATTCTTTTGAGTGCGTTTTTAAGTCTGATTTCAAATAAAAACATTTTCCATTCATCCAGTTATTACTATTATTATAACATGGACAACTCATCGGTGAAAAAGACGACCATTCGGGCAATAGGCAACTCCGCCGGAGCTACCATTCCTAAAGCTCCATTAGAAAAGTATAATTTTTATGAAGGCGACACCGTATTACTCTTAGAAACCGAATCGGGTATCCTTTTATCTCCCTATGATCCCGACTTTGAAAAAGCTATGGATATTTACCAAAAAGGTTCTAAAAAATATCGGAATG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 96503-97026 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTST01000011.1 Leptospira santarosai serovar Grippotyphosa strain M72/6-6 Contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================ ================== 96503 28 85.7 43 ....G.....A...A........A.... TGATCGCCACGATTGGAGTGTTCCGATGCGAAGAAACTGAATT 96574 28 92.9 43 ..T........T................ CTAATAACCTCTGGAATAATAAATTAATAATTCCTACTGAACT 96645 28 100.0 43 ............................ CATTCAAGAGGGACTTCGCAAAATAGACAAACAAAACTGAATA 96716 28 100.0 43 ............................ CGGACATGAATATCTAAAAACAGGCGGAAATACTTTCTGAATA 96787 28 100.0 44 ............................ TATGAAAGACATTGACATCGCATTCTTACCGGAGCTGCTAAACT 96859 28 96.4 40 ..............A............. CTATTATCAATTTTGCATGGACGTCGATCAATCCAGAACT 96927 28 85.7 44 .G...........AA...A......... TATAACCTGATTCTCGAATAGGTTCGAAAGCGTGATTCTAAAAT 96999 28 85.7 0 ......C..............C...AT. | ========== ====== ====== ====== ============================ ============================================ ================== 8 28 93.3 43 TAACTTTGATGCCGTAAGGCGTTGAGCA # Left flank : ACACCCGATTATCAAGAGTTATTGACGGGTACGGAATTATTGATTTGGGTTCGAAATGGAAAAGATTTAAACGAAACTTCGTTAAAAGATAAAATCAAAAATGCTTTTGAGAATCCAAAGAACATTTCTCGTTTTGGGTCTCTTTGTTTAGGAGAAAGCACTCATCTAGTAAATGATATTCGATATGCGAAAGATTCCGATAAAAAATCGTTTCAACTCTTAAAACCTGCTAAACTCGGAGAAATCAGTCTACCAATTTGGCCCGATCACGTGGGATCTTTTAAAACAAAATGGCAACAATTTCTAATGGAAGACTCTCAACAATTTAGGGAAATTACGGATGCCGAATTTATTACGATTTCTCCTTAATTCCGTCGTTAGAAAAACCCGTATCGCAACATAAGGTAAATCGTTACAATCTCCAAACGTTGCGAAACCGCCGTAAGGCGTTGAGTACTTTTTTGGTAACGAGCCGCTTCTTACGACTCGCAGTCTGAGTA # Right flank : ACTCAAAAAATCAACTCTCTTATAAAAAATTCTTATTTTATAATTCAGCCAAAAACCAACCGCAAAAGTTATAAACCCAAACTATAGAATCTCTTTTTTCATTCTAAATTTTAAAAAATAATATATTTAACTAATTTTTAAAATATTCCAAATCGATATTATTCTAAATTTATAATTCTTTTATAACAAATAAAACCATGGATTCATACGGAAACATACGAGCAATGGGAATCCATTCCCTACTCTATTGCGAAAGACTTTTCTACTTGGAAGAAGTGGAAGGAATTCTCGTTGCCGACGATCGTGTCTATGCAGGACGCAGCTTACATGAAGAACTAGAACCCAATGAAGAATCATCGGGAAGAATCGAGTCCTTTCACTACTCAAGTGAGAAATTAGAAATTTCCGGCAAAGTAGACCGCATTCAAAAACGAAACGGAGATTGGATTCCCTATGAACACAAAAGAGGCAGAGCCAAAATCAGCAAGGACGGTCCGGAA # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAACTTTGATGCCGTAAGGCGTTGAGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 99525-99833 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTST01000011.1 Leptospira santarosai serovar Grippotyphosa strain M72/6-6 Contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================ ================== 99525 25 100.0 47 ......................... GCGTTGAGCACAATAAGGGCATCTTTAGAAAAACAGGCACAATAAGA 99597 25 100.0 45 ......................... GCGTTGAGCACTCTATTGATGAGGCCTATGCGGCCCTCACTAAAG 99667 25 100.0 48 ......................... GCGTTGAGCACCAAATCTACGCCGTGCAGATCTACGCGATGCAGATCT 99740 25 92.0 44 .....................A.G. CGTTGAGCACAGTTCGTATCTAAAATGTTTCGGATTACTCAGAA 99809 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ================================================ ================== 5 25 98.4 46 CTGAATATAACTTTGATGCCGTAAG # Left flank : AAATTGGCAAAAGTCACCGAAAAGGAAGACGATATATTCTACCTAACACTCTGTGCCAAATGTGCTTCCGGCGCTCATACCCAGGAGAAAAAATCCGCCTGGCCGGATGCTCCAAAGACACTGAAAATTCTGTAATTCAAGTATCTCTTTCGGGCATAGACATAATTCTCTTTCGAAAACAAATACTTTCCACTTTTCATCTTTGTTTAGTTCCCATAGTATCAATTTTCATTGGATTCCAGAATAGTTTCGATCAGTTGATACTTGGCGCCTATTTTTCTTTCTTGCGAAAATTCTGATTCAATTCATTATTAGAAATCGGCTAAAATGTAATTGAATCCTTAAATTCAAAGCTAAAACACCAAATGAAGCAAAATCCTACTCGTTATAGAAAATATAAATATGAAAAATAATTATATGGAAGGATATGCTTGTTTACTATTTAACAATGTCTTTGTATCTGCAATCCCTCCGCGCAAAAATGATCAAAAAAAAATGCT # Right flank : GGCGTTTCACTTCCCCAAAACAATAAAAAAGCCGAAGATCACTCTCCGGCTTTGAATAAACTTAGATCCTTAACAACATACAAACTACGATAGAGAGTTTATCCTATTTGAAATCCTCTTCGATTTCTTCCTGGCGTTGTTGAATATTAGCAAGGCCCCCGAGTGTCCTCAGGGATTTCGTAATATGGTCAAGCCTCACGACCAACCGCAGCACCGAGAAGCGACAGTGTCGCTTCGAATGCGAGGTTAGGACTCGTGCAAAGCGAAGGCGAAGCACGAAGTCCTGGGCGTGAAACATAAAAAAAAGCCAGACTGACTATTGCCTGGCTCTTGTTTGATGTTAGTCGTTTTACCGACCTTGGATATCTTTCCTTAACAACATACAAACTACGATAGAGAGATTGTCCTATTTGAAATCTTCTTCGATTTCTTCCTGGCGTTGTTGCCATTAGCAAGGCCTTGAGTGTCCTCAAGGCTTTCGTAATATGGTCAAGCCTCAC # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAATATAACTTTGATGCCGTAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //