Array 1 16344-18094 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALIY01000001.1 Actinomyces sp. ICM58 ctg120007878478, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 16344 37 97.3 36 .............C....................... ACGCCCGACGCGGCGCGCACGTGGCCGATTCGTCTC 16417 37 100.0 38 ..................................... CAGACGCACCCGGTCACCGGGCAGGACGACGCTCGGAG 16492 37 100.0 38 ..................................... TGATTGTTCTCCTTGATGATGGTGATTTGTGGTTCGGG 16567 37 100.0 37 ..................................... CTTGGTCTGCTCTGTCTCTATCCGGCGGATGGTCTCG 16641 37 100.0 39 ..................................... TGAGCGCGTAACGGACTACGACGTAGTTCATCGGGACGG 16717 37 97.3 39 .......................C............. CTTGTAGAGGACAAGTCCTGAGAAGAAGCCCAGGATCTT 16793 37 97.3 37 .......................C............. AACATGACACCCTCCCTGTGGGACACTTTTCTTTCAA 16867 37 97.3 39 .......................C............. TAACGGTGTTGGTGTTCATGGCGTGTTGTCTCTTTCTCG 16943 37 97.3 35 .......................C............. TTCGTCGTAACGTCGCCGCCGCCCTTCGTGATTTT 17015 37 94.6 34 ...T......................C.......... GTGCGGTCAATTACGTGCCAGGTGCGGGCTTCGA 17086 37 94.6 38 .................A........C.......... TCTCGAAGTAAGTGTCATTACGCAGATTGAAGGCGTTG 17161 37 100.0 39 ..................................... GCACCATCAATTTCCGTTCAACGATGAAAGGATGTTCCA 17237 37 97.3 34 ............................T........ TTGTAACCGTCGCAGTAGCACTTCATGTATCGAA 17308 37 94.6 38 ...........................T...C..... CAGGATAGACGACGCACACTAGCGAGCCGGCGGGCGGC 17383 37 97.3 37 ......C.............................. TCGGGGAGCGCCCACGCGGTGACGAGCGGGACCAGTG 17457 37 100.0 34 ..................................... ACGGTGGCGGTTGCTTTGTCGCCGTCGATGACGA 17528 37 100.0 38 ..................................... CTTTTCGGGGACCACCGCGTCCACCTCCAAGTACACGA 17603 37 94.6 40 .....................TT.............. GCAACGTCGGTACTGACGCCATTCTTCGCAGCTTCAACGA 17680 37 94.6 39 .....................TT.............. GGCGCTCAAACGCTGCCCGTGCGGCCTATCCTTGTCTGC 17756 37 97.3 38 ............T........................ CACGTCATCGCGGAGGTCGCAGCGTTCATTGTCTTTGA 17831 37 97.3 40 ...................................G. TTGATCTCGCCTTTGTACTGATGGATCTGGTTCAGCTTCC 17908 37 94.6 37 .................A.....C............. TGCTTGTAGTTGGTCACCATGTTCAGCATCTTCTTCA 17982 37 97.3 39 .......................C............. TCGGCGTAGAAGTGGTAGTGGGAACCGACCCACATCTCT 18058 37 94.6 0 .................A.....C............. | ========== ====== ====== ====== ===================================== ======================================== ================== 24 37 97.3 38 GTCAGAAAGCACCGAGCGCCAAAAGGTGCATTAAGAC # Left flank : GGCCAGGAGCGCCCGGGTGATGGGGTCGGCCGTCGTGAGAGTGTTCGTGTCAAGTGCGGCGATGCGTGGCGGCGCCCAGTCCTGGGCGGCGAGCTCTCGTAGCTGGTCGTCGGTGAGGCTTCCCGGCGTGGGGGTGTTCGCTCTGGTGGGGTCGGGGTGTGCTGTGAGGAGTCGGCGTCTGGCGCGAGGGAGGGCTTTGGGGGCTGGTCGCTTCTCTCAGGGACGAGGCCGTGGCGGGTGTCGTCATTGTCTGTCCTTCCACTCAACAACCTTGCGATTACTCTACAAGTGTGAAGTGCTGTGACTGATCGACACGCCGGTGACGGCGGCGATCTCCGGGGCGAAAGCATCGCCAGAGCGAGTCTGCGGCGATGCGAGCAGTCGCAACGAAAAGTCTGGTAATCTGACCTCGTGCTTGTTGGCCGGAGGGGTGCTTTTTCGGCCACTGGCGATCCGGTACGACGTTTTCCCTGGTCACAGGGGTTGCGACACGCCGGGCA # Right flank : TGCTTGTAGTTGGTCACCATGTTCAGCATCTTCTTCAGTCAGAAAGCA # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCGAGCGCCAAAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 11209-18804 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALIY01000071.1 Actinomyces sp. ICM58 ctg120007878579, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11209 29 96.6 32 ............................G CGGCGCGACCTGCGCCTCGATTCGCCCATATG 11270 29 100.0 32 ............................. CGTGGCCGTAGGTGGACACGCCACCCGTATCC 11331 29 100.0 32 ............................. GAAGTGGAGGCTGCATGGCGCAACATCATCGT 11392 29 100.0 32 ............................. GTCGCCCGGCGCGAGATCGGAGACGCATCCGC 11453 29 96.6 32 ............................G CACTTCCTGAAGCGCCGACGTCGTGCGGGGAC 11514 29 100.0 32 ............................. AGAAGCAGCTAAGCGCCCTAGCAAGGGTGGCG 11575 29 100.0 32 ............................. CGTGACAGTCTGTCCACCATCCGAAGAAACCC 11636 29 100.0 32 ............................. CGCGACAGCCTGCCCGGCTGCACGACCGGCTG 11697 29 96.6 32 ............................G GCGTTTGAGAACACGCCCGCCAGCCAGCCCAT 11758 29 100.0 32 ............................. AGCATGGGCGGCGCTCAACGCGACGATGGCCG 11819 29 96.6 32 ............................G GACATGCAACATGAATGACCTCCAGACCCGCG 11880 29 96.6 32 ............................A GCGCGATCTCAACCGTGCTCGGCCCGGTCTTC 11941 29 100.0 32 ............................. CTGGCCGCCGACAAGGCCGAAGCCCGGGAGAT 12002 29 96.6 32 ............................G CTGGAGGTCGAGGAGGTGGACCATGAGTAACC 12063 29 100.0 32 ............................. GTAGTCGAGGACTCGGACATGTAGGTGCGGAC 12124 29 100.0 32 ............................. GCATGTTACGCCCCTCGCATGCCTTCGCCTCG 12185 29 100.0 32 ............................. GCGCGGGCCGTCCAGACGCTCGCCCATCCAGC 12246 29 96.6 32 ............................G ATCAGCAGGCTAATCTTGATCTCATCCTGGTA 12307 29 96.6 32 ............................G GTCTATAACCGGGTCGTCGCGCGCGGCCAGGA 12368 29 96.6 32 ............................G CCGCTAATGTCGGCGATCACCCACCCGTCGGG 12429 29 96.6 32 ............................G CTGTCTTTGGCCAGGTGGCGAGGATGTCCTCG 12490 29 100.0 32 ............................. CCGTGACCATCGAACAGTGGAACCGTGTCCGC 12551 29 96.6 32 ............................G TCCTATGGGTGGGACGGCACGGTTCTACTCGC 12612 29 96.6 32 ............................G GGGCTGACGCCGCCCGCCGACGTGCAAATCAG 12673 29 96.6 32 ............................G GAACCCATCATGCCCCGCACCCACGGCCTACG 12734 29 96.6 32 ............................G TCATCCTCAGCGCGGGATGCGCCGCCGCCCAG 12795 29 100.0 32 ............................. GCGATTCCGGGTGCCAGTGGCAAGATTCAGAA 12856 29 96.6 32 ............................T CCGCGGGCTACCCTCGGATACTCCTCCTCGGA 12917 29 96.6 32 ............................G TCCTCATCGAACAGGGTCGCGGACAGGCTCAG 12978 29 100.0 32 ............................. GCGGCTGGACTTCTGCTGCAACGACGAATGTG 13039 29 96.6 32 ............................G TGCAGTTCGCTGGTCAACGCGCGTAGCTTGTG 13100 29 100.0 32 ............................. AACGAGGCGTTCAGGGCGGCGGTAGATGCCGC 13161 29 96.6 32 ............................G TCAGCGTCACAGTCGTCCAGCCTCGCCTCGGG 13222 29 100.0 32 ............................. TCCGCCACCTGCTCCGGCTGGTACCCGCTGTC 13283 29 100.0 32 ............................. TCGGAGACCAAGCGCTACACTTAGGGGTGTGC 13344 29 96.6 32 ............................G GAGGGGCGGCTGTGAACGCCTCGATCATTGCC 13405 29 96.6 32 ............................G CATACGGCTGGTACCGCGCCTACGACCCCGAG 13466 29 96.6 32 ............................G AGATCGCCTCACGGATAGGACCGCACATGAAG 13527 29 96.6 32 ............................G TCCCTGCCGGCGCTCTGCCCGATATTGGGCAG 13588 29 100.0 32 ............................. TTCGCGACGTTGCCGCCGACAGCTTCGAGGAC 13649 29 100.0 32 ............................. CACGCGCTCTGATAGACGAACGAAGGCCCCGA 13710 29 96.6 32 ............................G GGCAAGCGCCGCCTGCCCGAGGACCACCCCGA 13771 29 100.0 32 ............................. CTCAAAGAAGGAGAAAGACAATGAAGGCCGAC 13832 29 96.6 32 ............................G TCCCAGTCGACGATCACCGCGGCGCCGAGCAT 13893 29 96.6 32 ............................G CCGAGGGACAGGCCCCCCGCGCCGGTGGTGGC 13954 29 100.0 32 ............................. CGTCGGTGACCTGCGTCTGCGCCGCCTCATGA 14015 29 96.6 33 ............................A GCCCCCTTCTAGGCCTTGATAATGTATCCCACC 14077 29 96.6 32 ............................T GGCGCGGTGAAGATGCCCCCGCCCTCATCACC 14138 29 96.6 32 ............................G TCCCGGGCGGGCACGAAGCCCGCACCAGCGAG 14199 29 96.6 32 ............................G GCAGCGAGCACTTGCTTTCCCAACCGAAGCTC 14260 29 100.0 32 ............................. TGGGATACGATTTGGCAGGGCATCTCTACCGT 14321 29 100.0 32 ............................. GAGACCAACGTTAAGCCTTACTACGATTACCC 14382 29 96.6 32 ............................G CGTCGTCGCGGGTCTGGTAGCCGCCGCGTCGG 14443 29 100.0 32 ............................. ATCATGCTCAATCGCTACATGCCGGCAACCAA 14504 29 100.0 32 ............................. GGGTGGGTTCTCATCATGACCAAGCGGCCAAC 14565 29 96.6 32 ............................G ATAGCGACAAGGGCGGCAATTGCTGCGATGAC 14626 29 96.6 32 ............................T CATGACTACCGAGTACCTCGGAACGGCTACTG 14687 29 96.6 32 ............................T GCGGCTCCCCCTACCCTCGTACCGTGCCTGCG 14748 29 96.6 32 ............................G TCCTCGATTTCCAGCGGCGTGAGCTCGGCGGT 14809 29 93.1 32 ...A........................G CCGGATGCGACGGGGTCCAGGCAGAAGCCCGC 14870 29 100.0 32 ............................. GCCAAGCTCGACGCCATCAAGGCAGCCATCGA 14931 29 100.0 32 ............................. GCGTCGACGCTCGCGTTCGCTTCCTGCGTTTC 14992 29 100.0 32 ............................. AGCCCCCCGGTAGTACCCACACCCACCCGAGG 15053 29 100.0 32 ............................. CCGTCGTCCGCGTGAACAAGGCCTGGAAGATG 15114 29 96.6 32 ............................G GGCGCGGGCTACCGCATCATCGTCAAGGACGC 15175 29 100.0 32 ............................. CCGGAAACGCCCTGCGGGGGGTTCGATTCCCC 15236 29 100.0 32 ............................. AGCTGGGACAAGCACCAGAAAATCAACCGCCC 15297 29 96.6 32 ............................T CAGGGGCTTATCCGTCGCCTTCAGTGTGTTCC 15358 29 96.6 32 ............................G TCACTAAGCCGCGCGGCAAAGCCGCCGTGAAA 15419 29 96.6 32 ............................G CACGTGAGCGCGCCCACCGGCGGCGTGAACAC 15480 29 96.6 32 ............................T GTCATTGCAGGGGCGGCGGCTTTTTCGCTCAC 15541 29 100.0 32 ............................. CCCCGGGGTTGGTGGGGCCACCCGACGCGGCG 15602 29 96.6 32 ............................G GAACAGCTCCGCACGTGGTGGCAAGCGCACCC 15663 29 100.0 32 ............................. TCCCACCGTGCGACGGTGGGCATACGGCGTCG 15724 29 100.0 32 ............................. AGACCGGCTCCTACAAGGTTCCATTCCCGCGC 15785 29 100.0 32 ............................. CAGGCACACACCTACGGCCCTGGCCCCATCTA 15846 29 100.0 32 ............................. CTCACGCACACCAACCCCACCGAGACCGTCAC 15907 29 96.6 32 ............C................ GTCCTGAAAAACGTCCTTGAATCGCTCGATAG 15968 29 93.1 32 ............C...............G GTTGTCGACTCGACGGACTCGCCGCCAGTCAG 16029 29 93.1 33 ............C.G.............. TGTCCAGAATATGGACTGTGACGCAATCCCGAG 16091 29 96.6 32 ............C................ CGGTCCTATCCCGTGGGACTGAAACCAGCGCT 16152 29 96.6 32 ............................G AGCCAAAGCCAGGCCTGAACGCCCGCAAAACC 16213 29 100.0 32 ............................. GGCGCCGGGAAGCTGGCAACGCAAGATTGGAA 16274 29 100.0 33 ............................. TGTCCAGAATATGGACTGTGACGCAATCCCGAG 16336 29 100.0 32 ............................. CCTCTCCGACCTGCGACGGCACCTGCGGCAGC 16397 29 100.0 32 ............................. GCGGCGTATGTCTCGGTGATCGGCTCGGGAGA 16458 29 100.0 32 ............................. ACTGTCTCGACCGACTGGCGGAGAGACTCGAA 16519 29 96.6 32 ............................T CAGTTGGCCGACGCCATCCCCGGCGCGTCCGG 16580 29 100.0 32 ............................. TGTGTAAAGCCCATCCGCAGATTCTTCGCCCT 16641 29 100.0 32 ............................. GGCCAGCAGCTTGCATCGCGGTAGTCCAATCT 16702 29 100.0 32 ............................. GCTACGACGTCAGTTTTCAGGCTGGGCGATGG 16763 29 96.6 32 ............................G TCGGTCCCGGCCACATCGCGCGTGAGTCCCTG 16824 29 100.0 32 ............................. CGTGGCGTGACCTTCGGCCTGGAGAACGTTCA 16885 29 96.6 32 ............................G ACCGCCTTCTCCGGCCACGTCGACACGATACG 16946 29 100.0 32 ............................. CACGACTTACCCAGGCCCTGCCGCCCGGTCAG 17007 29 93.1 32 .....T......................G TCATCCAACCACGCCGCGACCTCCACCGTCCC 17068 29 96.6 32 ............................G TTGATGGGCTTGGCGACCACGGACTTGACCGA 17129 29 100.0 32 ............................. TGCTGGAGCGCTGGCACGGCCACGTCTCGCGC 17190 29 93.1 32 .........A..................G AAGCCCAGTATCTTCCCCGCCCACGCTCGGCC 17251 29 96.6 32 ............................A TCAACAGGACGGGCCAGCTAATTTGTGTATAG 17312 29 100.0 32 ............................. GCGACGGCGGTAGCCACGTCGAGATCAGGGAA 17373 29 100.0 32 ............................. GTTGTCGTCTGCGTGGGGACACCAGGGTCAGA 17434 29 100.0 32 ............................. CGACTGGTGGGGCAACGTCGGGGTCGGCACGG 17495 29 96.6 32 ............................G AAAGGCACCAAATGTTCGCCGCCGAATTGCTC 17556 29 96.6 32 ............................G CGGTCAGACGGCTTGGTCGGCGTACCGAGGAC 17617 29 93.1 32 ..............T.............G ACGGGAGTGAAGAGCCCGTCGGAGTCAAGGGT 17678 29 96.6 32 ............................G CCGCCCTGCCCGTCGGACCTGGAGTCGACGAC 17739 29 96.6 32 ............................G AAAACCCTGCGACAGGGGGCGGGCCCGCTCAT 17800 29 100.0 32 ............................. CTATGGGGCCTCGATCTCGTGTGCTGGTGCCC 17861 29 100.0 32 ............................. GCGAACCATTACCGCATCAAGGCCAAAGCCGT 17922 29 96.6 32 ......T...................... CCCGCCCTCACTACGTGGGCACTCGCACACGC 17983 29 86.2 32 .....T......CG..............G TCGAGCGTGGAGAGCATCTGGAACAGTGTGAA 18044 29 93.1 32 ............CG............... ATCGCCGGGCCCACACCCTCCGCGAGCGCCAC 18105 29 96.6 32 ............................G AGTGCGTCGGACAAAATCCGCTTCGCCTTCGC 18166 29 96.6 32 ......T...................... ATCACGCTGAGCAACTCCACCCGCTTGCGCGC 18227 29 96.6 32 ............................G CCCGGCGCCGTCATCGACGACGCAGGCGTGGA 18288 29 93.1 32 ............CG............... GGAATCAAGGGCATGTTCGGGTCCGTCCAATC 18349 29 100.0 32 ............................. CGACGCCCACCGTTGGGCAGGGTCTCCCACAG 18410 29 100.0 32 ............................. AGGTTGTCGGTGTAGCGTTGCACGTGGGCGAG 18471 29 100.0 32 ............................. ATCACGCTGAGCAACTCCACCCGCTTGCGCGC 18532 29 96.6 32 ............................G GTGACAGCGCAGGACGCCGTCGGGGAGGGTGT 18593 29 93.1 32 ............CG............... GGACACACGGCCGCAAATACCATGAGCATTAC 18654 29 89.7 32 ............CG..............G GTCAGCGTCACTGTGCAGCGCAGTTGCGCTGC 18715 29 93.1 32 ............CG............... GGTGGCTGGCCGGCGGTGGCCCCGCGCGTGAC 18776 29 79.3 0 ...C........CG..T........A..A | ========== ====== ====== ====== ============================= ================================= ================== 125 29 97.5 32 GTTTTCCCCGCCTACGCGGGGATGAGCCC # Left flank : GTTGACGATTTGCGTCTATGGGACGACCGAAAGGGCACGGTTGCTGCGGGTGTGGCGTATGAGGAGAGTGACTCCTGGTGATCGTCCTCGTGCTGTCTGCCGTGCCTGAAGGTTTGCGAGGGCACGTGACTCGCTGGTTGATGGAAATCTCGCCGGGAGTATTCGTGGGGACGTTGTCCGCACGTGTCCGTGAGCGCCTGTGGGATATCGTCACGGAGAACATGAAGACGGGGCGTGCCGTCATGGTCTATCGGGCGCGCAACGAGCAGGGCCTGGCCTTCCTGACCTGGGGTGATCCGTGGAAGCCTGTCGACTTCGATGGCCTGACCCTGATGATGCGCCCCTACTACTCGGAGGGGCGAGGGCAGTATTCCGAGCCTGATCCTGCGGCGCATCAGTTGCGTAAGCGGCGCTCAATGAGTAGCTTTCAGAGGAGACGGCAAGCTCAAGGGTTTCCAAGATCTGACCGATCCGCTCGATAAAAGCGCAGGTCAGAAAGT # Right flank : ACTGGGGATCAAACATCAGTCCCTGTGGTACACGTATTCCCCGCAACCGCGGGGTTCTCCGGTGCGCCGTTGGCGCGCATACCCACCGGAATAGAAGATAACGACCCTTGCGCTCCCCCTTCCTGTCGTATTCTGCTCGGCTATCCGCAATCGGATAAAGGAGAGAATGAAATAATGGACGCGGCAACGGTGGCGCAATTGGGCTCTGGTGAGCCGACGGTGATGCACGGTGAGGCGGACACGGTACAGGCGACGAAGCAGGGAGTGGGCGAGACAGCGAAGACGCGGTTCCGCGCCCGCATCGCGCACGTGGGCAGCGAGTATCGCCGTGACGTGACCTCGGGTACCTGCGAGCTGTGCATCGCAGAGTGGACCGCCCGCATCCGCGACATCACCTTCGAATTCGCTGCCACAGACGGCAGTGCCACATGGAAGACCGTCACCCCGATCCTCCACGTCGGCCCCTGGAACGACAACTGGGAAGTCTGGGTCAACCCCTT # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCCTACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCCTATGCGGGGGTGAGCCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //