Array 1 21499-30178 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPLT01000017.1 Halorubrum sp. Atlit-26R P_contig000017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 21499 30 100.0 37 .............................. CTTCCGGTAGGCCTCCTGGAGGCTCTCCGTCTGCGCC 21566 30 100.0 35 .............................. ACGACCTCGCCCTCGAGCACGATCTCCGAGTCCGG 21631 30 100.0 37 .............................. GGTCCTGGAGGAACGCCGACGTCGACCTCGTGGTTCG 21698 30 100.0 37 .............................. GGCTCGTCGTGGGCGAACACCCAGATCCAGGGGTCGC 21765 30 100.0 36 .............................. GCGATGAGGATGAGGCGGTCGCGGTTGTCCGTCGCG 21831 30 100.0 35 .............................. CCTGAGTGCAAGGTCGCGGCCTCGATCGACGAGTT 21896 30 100.0 34 .............................. GAGCTCGGCGTCGCTCGGGCCGCCGTCGACGACG 21960 30 100.0 36 .............................. TACCGGAACCCCCTGAGCGCCGTGAAACGCTCGCCC 22026 30 100.0 34 .............................. ACGACCTCGCCCTCGAGCACGATCTCCGAGTCCG 22090 30 100.0 37 .............................. GCTTCGTCACGGTAGCAGTCGCCGCGCATCGTCATCG 22157 30 100.0 36 .............................. TCGGTCGGGTGCTCGTTGTCCTGCGAGGAGTGCTTG 22223 30 100.0 33 .............................. GGCTCCGGCAAAGCCCAGGGGAAGGTCGAAGTT 22286 30 100.0 35 .............................. GTCGAGGTCGCCGCTCCCGAGGTGATGGACGTCGA 22351 30 100.0 36 .............................. AGCCAGGGCCTACCGCTCGAGGTCCTCGCTGCGAGC 22417 30 100.0 38 .............................. TTGAAGTCGAACTGGTCGCCGTACTCGTCGACGACGTC 22485 30 100.0 36 .............................. GGCTCGAGGAGGAGCTCGTGGAGCGTGAAGTCCAGG 22551 30 100.0 37 .............................. AACTCGTACAGCCCGCGAGCGACACGCCGAACCCAGG 22618 30 100.0 35 .............................. ACGACGACGGCGAGCGTGAGGCGGTTGGTGCCGTA 22683 30 100.0 36 .............................. AGGAGTTGGCACTGCCGCTCGTTGAAGTCGCCGATC 22749 30 100.0 37 .............................. ACGCGTCTGAAGTCAACGGAGGGCCGCTCAATGACTA 22816 30 100.0 37 .............................. ACGTTGGCGACCAGCTGGAGCACGCGTCGCTGCTCGC 22883 30 100.0 35 .............................. GCATCTTCGCTCAGACCGTCCTCGACGTCGACGAA 22948 30 100.0 35 .............................. CGCGTCGACGCGAAACACGAGCGCGCCGAGCAGCA 23013 30 100.0 36 .............................. CTCCTGATTGGCGAGCGTGTCGGCCTCCGTCTCCCC 23079 30 100.0 36 .............................. CGACGCTGTGTCGGGAGACGGGGTGAACGACCACGG 23145 30 100.0 32 .............................. CGCGACGGCGTCGACGCGCCGGTCAACACGCG 23207 30 100.0 36 .............................. GCGAGATAGCGCCCGAGGACTGATCAGAGCTCACAG 23273 30 100.0 34 .............................. GAATGGACCGAGGTCAGCGAGACGCGCGATCCCG 23337 30 100.0 35 .............................. CACAAGTTCGTCCGTATCCCAGACGGATCGACCAA 23402 30 100.0 37 .............................. GTCGCGATCATCGACATCATCGATGCCATCGCGACGT 23469 30 100.0 33 .............................. GAGGTGACGCTCAACACCAACGGCGATCTCCAG 23532 30 100.0 37 .............................. GACCGTCCCGCGATGGACGAAGTCGAGGAGGACAGGC 23599 30 100.0 37 .............................. TGTTGGCTACCGCAGGTCGTGAGCCGCTGCTCTCGGT 23666 30 100.0 36 .............................. AACCAGTTCTGGAGTGACTGGAGTCGCGAGCGCGCA 23732 30 100.0 35 .............................. TGCGGGCCGTCGAGCGCGGTCAGCGCGTCCCGCTC 23797 30 100.0 35 .............................. TTTCCGACCGGCGGGGCGTGTGGGTGCCGGCCATC 23862 30 100.0 36 .............................. GGTTGACGACCCCGAGACAATCCGCGGATGACCGAG 23928 30 100.0 35 .............................. GTGTCCGTCTGACCCCCACCACTTGCGTCGTCAGA 23993 30 100.0 35 .............................. GTTGACTCCAAGACGGGCGACGTGGCGACCGACGC 24058 30 100.0 37 .............................. GCTAAACGTCTGTGGCGATCCGAGTGTCTGGATCGGC 24125 30 100.0 36 .............................. AAGGACCAATATCTGACGACGTTTAGCGTGCGCCTC 24191 30 100.0 35 .............................. GCAAGCGCGGACGCATCCAAGTCGGGCCGACCATG 24256 30 100.0 36 .............................. CTTCATGAACTCGGTGATGGACGCGACCTCGGCGAC 24322 30 100.0 36 .............................. GGCGAAGTCGGTCAGAACACTGGCAAGGTCGTTATC 24388 30 100.0 37 .............................. AGACGGTGCCGGGCGTGACGAGCGAGCGTCTTGCCGA 24455 30 100.0 35 .............................. TAATACCACCGAAAGCGCGACGATTAGCGGCGTTG 24520 30 100.0 37 .............................. CTAGCCGATACTAACCGACGAATAAATCAAGACACCG 24587 30 100.0 35 .............................. TCAGAAAGTTGAAGAACGCCGTTGATCCGGACGAC 24652 30 100.0 35 .............................. TCCCGATCGAGGATTCGAAGCATATCGCGCTGAAA 24717 30 100.0 35 .............................. TAATGTCTGGATAGATACGTCCGAACCAGTATCTG 24782 30 100.0 35 .............................. TCGTGCCGACGGATCACGGCACGCATCTCCTCCCG 24847 30 100.0 37 .............................. GGGCGGTGCCGTATGTCGCCTGTGCGAGCGCGCCGAG 24914 30 100.0 35 .............................. CACCCGGGTATTTCGACTCTGCTTAAAAAACACCC 24979 30 100.0 32 .............................. TCGAGGAACCAGTACCGCGGGCTCAACCCGCG 25041 30 100.0 36 .............................. CACCACAACACCGGACACAACGACAGACCTCTCGAC 25107 30 100.0 34 .............................. ACCTCGTGGAGGTCGGCCTCTCTGCTTCGGACCG 25171 30 100.0 36 .............................. GACACTCGCCGCCGCGTCAAGCCGGGCCGCCCCACG 25237 30 100.0 37 .............................. CTTCCAGCCTACGGACTGATGTTGAGCGTATCGCACA 25304 30 100.0 34 .............................. GGCGTCGATCTGGACTGGTTCATCTCCGAGATCG 25368 30 100.0 36 .............................. TGGTCGTCTGTGTGCCGCTGAACCGAGGTCGGTCGC 25434 30 100.0 36 .............................. AACGCGCGAAACCCGCGAGCGGACTCGACCAGATGT 25500 30 100.0 37 .............................. GTGTGGCCACCGGGTGTATCGCCGAGAAGGTGTACGT 25567 30 100.0 35 .............................. TCAACGTCGAGGTCAAGACCGACCTCGTCCTCGAG 25632 30 100.0 35 .............................. TCACGCCGCTCCTGAGCGGTCTGAACAGCATCGTG 25697 30 100.0 35 .............................. CGTTCGGGGATCACGCCCCTCGGCAAGCTCTGGTT 25762 30 100.0 35 .............................. GACGGGCCGGCGCGGTGGCGGGAGCTATCGCTGTT 25827 30 100.0 35 .............................. GTTTAGGCTCTGACACGGCGACAATAAACGCAGAC 25892 30 100.0 34 .............................. CTCCTCGAGATACTCCGGCAACTCGGGCTCGGGG 25956 30 100.0 35 .............................. TCGTCTCTCCGGCCTCCGCGCTTCGAGTCACCGAC 26021 30 100.0 33 .............................. CCGTTGTAGACGACGCTCGGGTCCCCGCCGATA 26084 30 100.0 35 .............................. CGCTCCGGTAGATCCGTCCGGCGCGACCGGCGGCA 26149 30 100.0 35 .............................. CCTCGCGGCCCGCGACTCCACGCGTGGACTCTCGG 26214 30 100.0 37 .............................. CCTTCGACAGAGTAAGTTAACGTGTCGCCGTCTGTCG 26281 30 100.0 37 .............................. CCGTCGGGAACGACGCGCGGGCGGACCTGCACCTCGA 26348 30 100.0 36 .............................. CGCGAGTACGAGGAGGCCGGCGACGGCATCCGTATC 26414 30 100.0 32 .............................. CTCGGGCAGCTGGCAGAGTTCGCCGCCGCGTG 26476 30 100.0 35 .............................. GATGAGTGGCGTCGGACTGTAGGCGCTACTGGTGC 26541 30 100.0 35 .............................. GAGGCCAGCTGGACGTAGTCGTCCGCGTCCGAGAG 26606 30 100.0 36 .............................. AGCTGGCCGCCTCCGCTCTGCGCGGTCGCCGTCCCA 26672 30 100.0 36 .............................. GCGCGCAGCGGTCCGTCGAACATCCAGCACGCGAGG 26738 30 100.0 36 .............................. GAACATCGCACACGAACGGAACGGGGAGGATGAGTT 26804 30 100.0 35 .............................. GGCGGACCGCTCGCGGCGGCCCAGTCGACAGCGGC 26869 30 100.0 35 .............................. GTGAAAACAGTCTGGTGGGCGGTGTTCATCGTCGA 26934 30 100.0 36 .............................. CCGTCGTCGCGGTACGACCACGGCGGATCGGCATAG 27000 30 100.0 35 .............................. TGCCCGATCAGCGCCTTCGAGAGTTTCATCGCCCG 27065 30 100.0 35 .............................. ACACCATTTACCTCGGTTACGTCCGGGAGCGTCAG 27130 30 100.0 36 .............................. GGGAGGTACGTCTCACCGCGATCGTTCGACACCTGA 27196 30 100.0 35 .............................. CGCGTCTGCCCGGATGAGTTCGCGGATGTACTCGC 27261 30 100.0 34 .............................. ACCCCTGAGAAGCCGACGATCGACCTGTTCGACG 27325 30 100.0 35 .............................. GTCCCGATCGCGGAGACGACCGTGCGCGACGTAAT 27390 30 100.0 36 .............................. TCGGCGTGGACCCACCGGCCGTCGCCGATGTCGCTA 27456 30 100.0 36 .............................. AAGACCTGAAAACGCTTATCGCAAAGATCGAATCTG 27522 30 100.0 33 .............................. GACACCTACGGCCGCGGACCCATCTACTGCGAC 27585 30 100.0 35 .............................. GGTACGCGCTCTTTACGGATCAACCGCTCCAGCGC 27650 30 100.0 37 .............................. TCCGCGAGAAACGGATTGTCCGCGCTCGTCGCGTGCC 27717 30 100.0 33 .............................. ATATCTCAAAGCATCCTGAGGTACCTAGGGATT 27780 30 100.0 35 .............................. AGCGCGCCCGGTCGTGCTTATCGGATGGCCCTATG 27845 30 100.0 35 .............................. GACACTCGCCGCGGCGTCAAGCCGGGCCGCCCCAC 27910 30 100.0 36 .............................. AGCATCGGGCAAGACGACTACGGCGGCATCCAGCTA 27976 30 100.0 35 .............................. TGCGCAGACTGGCCAGAATTCACAGATCTACCAGA 28041 30 100.0 36 .............................. CGGCACATCGATCCTTGGCGAGCCGAACAGGTACGC 28107 30 100.0 36 .............................. AAGACGCGCCACGAGCTACTCGTGTGGTCGCACGTC 28173 30 100.0 34 .............................. GCCCGCGAGGTCCGCGCGTACGCCTCGGTGACGC 28237 30 100.0 43 .............................. GTTATCGGAGTAGTAGCGGTTGTGGTGCGTCGTTGAGTTGGCG 28310 30 100.0 36 .............................. CGCCGGTAGCCCGGGTCGTCCGGCCCGCGGCGGTGG 28376 30 100.0 36 .............................. AGTCACTCCGCGATCCGAAATACTACGAGGTCGGTG 28442 30 100.0 37 .............................. CGGTCGAACACGTTGCGCTTGTATATCTGTTCAGGGT 28509 30 100.0 36 .............................. AGCCCTTGCCACTCGCGGGCGGGTACGTCGTCGTAG 28575 30 100.0 35 .............................. ATATCAGGCTGGCAGGAGCCGCTCGGAGCGGGCGG 28640 30 100.0 35 .............................. AATATACCGTTTGTCGACCAGATCGCGCTCTACGC 28705 30 100.0 37 .............................. GATCGTCGCACGGATCTGCCGGAGGCGTCGGTTAGTG 28772 30 100.0 37 .............................. GCTTGCCCGCCCGACACCGTCGCCGTGAACTTCGCCG 28839 30 100.0 36 .............................. CATCCATCGGAGGATGGTTGATGAATCAACCCCACA 28905 30 100.0 35 .............................. AAACACGAAGGAGAACGGCAGTGACGGGTCGAACA 28970 30 100.0 36 .............................. ATCCGTACGTAGACGAGCCCCGCGACGCCCGCTATC 29036 30 100.0 36 .............................. TCGCCGGCGCGCTTCGCGGCAGCAAGGGTATCACCG 29102 30 100.0 37 .............................. GGACGAACGCGTCGGAGGCTGCGTCCGCCCGGGAGGT 29169 30 100.0 34 .............................. CCTCGCCCGTACTGCCGGAATCGCCTGAGTCGAC 29233 30 100.0 36 .............................. AACGTCGACGAGTGGATCGACGAGCATCACTACCAG 29299 30 100.0 36 .............................. AACGTCGACGAGTGGATCGACGAGCATCACTACCAG 29365 30 100.0 36 .............................. TCGGCGTACACGTCGGGCTTCCCACCCGTGAGTTGT 29431 30 100.0 34 .............................. GGATCTGGCGTCTGACCGCATCGGTAAAGTACGA 29495 30 100.0 36 .............................. TCCTCGGGCGGCACTTCGAGGTCGCTATACACGTCG 29561 30 100.0 35 .............................. CCGTTCGGTGTATCGCGGTCGAATACCATGCCGTT 29626 30 100.0 37 .............................. GGCTCCGCGGTGTCGAGTCCGACCGTCTCCACGTCGA 29693 30 100.0 35 .............................. GCTTGGCACAATATCCCCGACGAGGTGGCCGAACA 29758 30 100.0 35 .............................. CACGAAGAGCTCGACGGCCTGATCGAGACTGCTGA 29823 30 100.0 35 .............................. GAGGTCATGGTCGCCGATCACTCGTCCGGGTCGCT 29888 30 100.0 36 .............................. TAAGTGTCGGCGTTCGTACACAACGGACCCATAATG 29954 30 100.0 35 .............................. AGGTGGTCGACGTTGGCGGCGACATTGAAGGCGAC 30019 30 100.0 35 .............................. TGAGGTTAGCCACTCCCCACCCACACACACCCTCC 30084 30 100.0 35 .............................. AAGGCGACGGCGCGGACGCACGCGGATGGGAACCC 30149 30 86.7 0 .......G..A.....T.....A....... | ========== ====== ====== ====== ============================== =========================================== ================== 133 30 99.9 36 GTTTCAGACGTACCCTCGTGGGGTTGAAGC # Left flank : ACACTCGAACGAACAGTCGAGCATCCGACGCTGAACCGGAAGGTGAGCTATCAGTATCTGCTTCGCTTGGAGGTATACAAGCTCAAAAAGCACTTGTTAACCGGCGAATCCTATGATTCGTTCAAGCGGTGGTGGTAGATGTACGTCATCGTCGTCTACGACATGGAGGCTGACAGGACCCACCTGATGCTGAAGCTCTGTCGCCGATATCTTGTTCATGTTCAGAACTCAGTACTGGAAGGGGAAATCTCGGAGGGAGATCTAGCGACACTGAAGGGAGAGATTGAAGATCTCCTTCAGGAGGGAGAGTCAGTCATGGTCTACGAACTCTCTTCGGACCGGCTATTGAACCGTACCGTGTACGGGGACGACCCGACCGAAGATAGTCGGTTCCTCTAGCTGATGTCGACCCCCAGGGGGTTTGGGGGGGATTGCGGGTCGACGGAAATGATGAAGTGTATTCCACTGGTAGAGGTGGTATGGTGGGCAAAATCACCATG # Right flank : CGAGCCCGTCGCTCGGAGCTCGACGTCCGTATCCGCGGGTTTCAGACGAACCCTACATATCGAGATAGGGGCCGCAAGCCCGAAATATGGCACTGTAGCCGATTATCACGAACGTCAAATCTCAGTACCAGATTTAAATGCTTAGCAGATAGTGACTTGGTATGGCTGAAGTTCAAGCAATCTTTCTTGCTATCTGTTTCCCGGTTCTTACGATAGGACTCCACGAACTGACCCACCTAGCAGTCGCCCGGATTGTCTGCCCGCTTTCGATTGAACAGACCTCATGGGTCCCGTTCCGACTTCGCCTCGATTTTGAGAGACTGCCGGCAAAAGCCACACTCCGGATGATTGCACTTGCCCCTCTATTTGTCGGCGGCGTGGCTGCTGCCGTCGCTATTCAGACCGGTATTTGGCAACAGATTAAAATCGCAGATCCGTACTACCTCCATCATCTTATGATAGCGTACTGGTTCCTCTATATCATTCCCAGCCCTGCAGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGTACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.00,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 273-1484 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPLT01000008.1 Halorubrum sp. Atlit-26R P_contig000008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 273 30 96.7 35 T............................. GGACCAGCATAGTAAAAAGGCGGCTACAAGCGATA C [284] 339 30 93.3 36 .............T.......A........ GACGGGATCGCGCCGCGTATCACCGACCGCTTCACG 405 30 96.7 36 .............T................ CAAGGCGAGAAGGAGAAATTGGAGGCAAACACGTTG 471 30 93.3 34 ...................A....C..... GAGTGTACCATGACCGGCGGGGACCCGGCAATGA 535 30 90.0 38 .............T....AA.......... TTGTCTGTCTGGATACTCCCGGCCGCAGTTATCTGGAG 603 30 76.7 35 ........T...T..CC...AA.......T TGAAGATCGTACTCTGTGGTCCGGAAACGCCCATC 668 30 86.7 34 .......G...T..T..A............ ATCGATCGGGCCGGCGGGCTCGTCTCTTTCTTCG 733 30 86.7 36 TC................AA.......... GACGAGAGGATCAACTACGGGCGCGACCCGACCAAC 799 30 100.0 34 .............................. TCCCACAGCGTCGAGGCCGCGTACCCCTCGACGT 863 30 100.0 41 .............................. AACCGAAAGGCACTGCCGTGGGAGGGCGCTGCGTCTACCGT 934 30 93.3 35 ..................T..G........ GCCGCGGAGGTGACGACCCCGGACCCAGACCCCCG C [946] 1000 30 86.7 36 A.............T...A..........T GACCAGAAGCAGCTCCGTTACGAGTTCGCTGGTCTC 1066 30 86.7 35 T.........G.......A..T........ GTCTGGATTCGGACGCGCGACGGCGACGTGACGCG 1131 30 86.7 36 ...........G....C.T..A........ CTCGGCGCATACCACTACCCCGATATGCCGCCTCAC 1197 30 93.3 34 .C...........T................ ACCGTCGCTGCGAAAGAGGATGTACAACACCGCA 1261 30 90.0 35 ...............C..A..G........ CTGCGCGAGACGCCTGCCCGGCTGCTGTATCAAAA 1326 30 90.0 36 .............T....A..........A AACCGCGTCAACCGGGCGGTCGACGGCGACGACGCT 1392 30 93.3 34 ..................A..G........ CCTCTGTAGCGTCAGCCACGTATGGCTAATACAA 1456 29 76.7 0 T..............C..T..-A.....TT | ========== ====== ====== ====== ============================== ========================================= ================== 19 30 90.4 36 GTTTCAGACGAACCCTTGGGGCTTTGAAGC # Left flank : TTTAGGACATTCTCAAGTAGAATTCAATCGTGTCCCTGTAGGTTTTGATATGCTCTTTCAGTCATTCTGTTAGATCCTAGTTGTGAATAAAGAAGCCGTGAACGTTTCGTGTCGTTCGCAACTTAACTCGCTCCCGCCCACGAACCGGAGCAGCAGGTGCCGCGAAAGCAATCCATCGACCTTCGGGGAGGTTGAACAGATATTGGAGGTCGACGGAAACGACTAAGTCAAACCCGGAGTGAGAGACGGGTAAGACACCCGTTCACGGGTGAT # Right flank : TGAGGCAGACGCGATAAACCGCGTGAGCTGAATCTGTTGCCCCCGGTGCGTTTATGTTCGGTCTCGGGGAATTGGTTAGATAGGTGTATTCACCGACATGATCTCCGTAACGGAGGCTGATAGATGCGGCTGCTGATTTCACTTGAAGCAACGGCAGACGCGGCGTATAGGCACACCTACCACCACAAGCTCCGAGGGCGGCTCTGGAAGGCACTCCGTGGGACTCAGTTCGAGGAGGAACACGATAATAACCAGCCGCTCGGCATGGCGTTCTCCAATATCTTCCCGTGGGGAGACATACAGGCTGGCGACGAGCGCACGGTGATTGTCGCGTCTCCCCGAGAGCCGTTACTGACAGCGATCGCGGGCGACCTCAACATGGACCCGACGTTCGACATTGGGGATATGCGGTTCCGCGTCACGGACGTGACTCCCTTGTCGGTCGACGTCGGAGAGCCGGGAGAGCGCGGTACGATCCAGACCGATACGGGAGTGTTCGT # Questionable array : NO Score: 4.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.52, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.17, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGGGGCTTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGTTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [16-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 9264-10869 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPLT01000008.1 Halorubrum sp. Atlit-26R P_contig000008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 9264 30 96.7 37 .............................A GGCCAGCAGCGGACCGCCCAACGGAGGCCAGCATGAA 9331 30 96.7 36 .............................A GCCCGCGACGTGCGCGCGTACGCCTCGTCGACGGTG 9397 30 100.0 33 .............................. CTTTGAGATTCGGATGCCGATCGCGTCCACGGG 9460 30 100.0 40 .............................. GCCCTGCTCGACGGCGATCGACAGCGCCTGTCCGGGCGTC 9530 30 100.0 35 .............................. TGAACGTGGCGGTTGATGAGCGCCTCGGTGTCGAT 9595 30 100.0 35 .............................. CATATGCGGAAGGGCTACCGACAGGCGGGAGGTGG 9660 30 100.0 34 .............................. ATCGACGCGCTGCCCGACGACATGGAGAAAGTCG 9724 30 100.0 36 .............................. TGAAACCGGTTTGTTGAGCAACTGTGATTGAACAAG 9790 30 100.0 33 .............................. CATCTCGGGTGGTAGTTCCATGTGCTGTGTTCA 9853 30 100.0 35 .............................. CACATCACCGGGCGCTCCGACGACGCTCACGCGGA 9918 30 100.0 35 .............................. GGGTGGTCTCCTGACTGAGCCCACGTCAGATCGTG 9983 30 100.0 37 .............................. ATCGGTCCCTCTCGTCGAGGTACGCCGCGATCGTGTC 10050 30 96.7 34 .....................A........ TTGATGTTCATGCGAGTCCTCCGAACGTGCCGCG 10114 30 100.0 36 .............................. CACGCCTACCGCGGGCTGAGTACCCTCGCCCTACAG 10180 30 100.0 37 .............................. GCGGAGACCGCCGACATGACTTACGCCCGCGATGTGG 10247 30 93.3 35 .A......................C..... TGCGACAACGCCAGCGAGTTCACGATCCGGACGGT 10312 30 96.7 34 .....................T........ CACGGCAGCGGCCTCACAGAGCACCACAATCTGC 10376 30 90.0 37 ....T.............T..G........ AGCGAGACGCGTCGGCACTCGGTACAGCGAGCGCGGA 10443 30 83.3 40 ..........G....G..T..G.......T GAAGCGCCGAAAACCCCGTCACCTACATCGACATGACCGC 10513 30 93.3 35 ..................A..A........ CCCGAGGCTCAAAGCACACAGGAAGCCCTCAGAAT 10578 30 90.0 36 C............T.......A........ GTCGACCCCGCCGACACGCCAGCCGACCTCGCGGAC 10644 30 100.0 36 .............................. AAGACTCGCTGGTCTGACGGCGGCCGACAGGACAAG 10710 30 93.3 35 ..................T..A........ GACAAAATGCGAAGCGACCCTGACTACTTCCGCAA 10775 30 90.0 35 ........T.........T..G........ AGTATTACGACGCGGAGGCGGGGGGAAGCAGTCCT 10840 30 96.7 0 .....................A........ | ========== ====== ====== ====== ============================== ======================================== ================== 25 30 96.7 36 GTTTCAGACGAACCCTTGGGGCTTTGAAGC # Left flank : CGGGGGTAGAAACATACTACGAAGCCCTCCACGGAAAGCGGAAGACAGGCGACAGACGAGATCGGCTTGTCTCCGCGTTTGACGGTTCGAAAGGCGAGCAGTTACGGAACGCGTCGCTTGTCGGGTCGGAGTACCCGACGCAGGAGACGATTGTGCTCACGTCAGAAGAAGACCGCGAGCAGGCGCGTCGGTACCAGCGACACAAGGACGCAGAGGAGTGGAGTGCGGCTCAGGCAGCCTTCCAAGACCTCAAGCGACTGTTAGTGACCCTTCCCGTCGAGGAACCGGTCGATGAACCCGTGATAATCGACGTAACAGACACCGACAGCTACCACCCGGAAACTGGGAGCGGGCCTACCATATCAGAGGCGCAAACCGACGCGGAGCTCTAAGCCACTATTCCATCGACCCCCCGGGGGTTGAGACGATATTGGAGGTCGACGGAAACGACTAAGTGAAACCCGGAGGGTGAGATAGGTAAGACACCCGTTCACGGGTGG # Right flank : CGCGAGCGTCGACCAGCTCCGGAAGGTGCTGACCGACCGACGGATCGAGCTCATAGAGGACCTGATGGCAGCGCCGGCGGAGAGCATCAGCCAGTTGGTCGAGCGGGTCGGTCGGACGTACTCGGTGGCCACGACGATGTCGACGTACTGGTCACCGCCGGCATCGTTAAGCGGCGGGAAGACGGGGCGGCGGCGCGGCTGTTCGTCCCCTACGAGTCTGTCGAGATTGGGATCACGATTCGGGCGGCAAGAGGAGCCGATGGGGAGGAAACGCCCGCATAAGGGACAAATGCGTGCGATTCCTTGAACGAGTCGTCTGGTAGTATATCAGACCTATCGGTAGGTGCCGAGATATTTTCTCAGCTTATTCGAGATCAAGGCGAACGCGACGATTGATGGGAGAGGAAACGGCTCACAGGGTGGATCTGGGGGGTACGGCACAGACGCCAATGGAGACGCTGGAAGTGAAGGGATGATGGGCGGATCTGGTGGTTCCGGTG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.82, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGGGGCTTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGTTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 13211-13752 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPLT01000008.1 Halorubrum sp. Atlit-26R P_contig000008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 13211 30 100.0 34 .............................. ACGTCGTCGACGAGGTCCTCGGACGGCGACCCGT 13275 30 100.0 36 .............................. CTGATCGGCTCGGCGCTGATCCTGACGTCATCCTCG 13341 30 93.3 34 ..............C..T............ CTGTCGCTCGACCCCGGAACAACCGACGACGTGA 13405 30 96.7 34 ..............C............... ACGTCGCGATCCGGTCGCTCGCTGACTTCATCGA 13469 30 93.3 36 ....T.........C............... GAACTACGCGACCTCGGCACAAGTGCCGGAGTCACA 13535 29 86.7 32 ..............C.GT...-........ CTCCGCGTTTCGGGTGGAGCGACCGCGAAGGA 13596 30 90.0 33 ..............C...T..G........ GAATCCGCGCTGGTCCATTGGCCGTTTGGACTG 13659 30 80.0 34 ...C.T....T..TC...A........... GGCATGGAGGGAGATTTTTGGGGTCGACTGACCC 13723 30 73.3 0 .......GT.....C..AAA.A.......G | ========== ====== ====== ====== ============================== ==================================== ================== 9 30 90.4 34 GTTTCAGACGAACCTTTGGGGCTTTGAAGC # Left flank : CCTTCGTAGGTCCAATCTTTATCAGCCCCTATTGCGCGAGCCGAGACAATTATTGGATGGTCGCGAGTGTTTTTTCCTTCTTTCTCTGTCTGGTGTAAAGGCGTGGACTCCACATCGCCTGCGTGTAGTTTGTACTCGTCTGGGGAGCCGCCCACAGGTGTTAGCGACATGGTTACCCACTAACCTCGGTCATATAGAGTGGATTCTTGTTCAAGTCCATATTAACAGGTAATCATCTACCGTGTTAACTTTTTTTGCCCTATCTCACACCTTTGAGGGCGGTTACTGCTCTCCCGGAATAGAGTCCTGAGTAGTAGTGGATAGGGGAGCCAGCACGAGTGAATATGGCGTAGTCAGGAGAGGTCGCGATCTCTTTCCACTTCATCCGGACCCGCGTGGCGTGGTTACGAACAGTCGTTGGAGCGACGTCGAGGAGGTCGACGGAAACGACTAAGTGAAACCCGGAGGGAGAGACAGGTAAGACACTCGTTCACGGGTGT # Right flank : GGGTGGGTGACTAAACCACCGCATACCGTCCGGCTGACCGTTTCGCTCTTATGTAGAAACGTGGAAAGAGGTCGTTTAGTTATTTCCTGTAGTGAATTGAGTACGTTAACTGAGACACAGACCGCCGGACGGCAGCAGTATTCAAAATTTCAAATCCTCTTTCCGCAGCTCTACACAAGAGCGAGACTTGGTGCGGTAGAGCGTGAAGACGAGAGTTGAGCCTCACCCACAGGAACACTCGAAACGGTGGAGGGTGAGCTTAGGCCGGAGCAGCGACGACGGTGGCAGAGTAGGCGGAGATCGCGTCCTCCGGGTCCTCGACAGTCGTGGCGAGCGTGGCATCGCTATCGGGGTCAGCGGTGCTCGTCTCGGTGCCAGTCGAGGCGACGTTATCGCCGCTTCCGTCGGTCCAGACGACCTCGGCCCCGCAGTCGACGGGGGTACCGGAACCGTTGCTCACGGTGATCGACAGTTCGTAGCCGGCGTCGGTGGCCGCGAGG # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.52, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCTTTGGGGCTTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGTTTGAAGC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.20,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //