Array 1 64343-63416 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEXB01000018.1 Salmonella enterica isolate STY33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 64342 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 64281 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 64220 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 64159 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 64097 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 63994 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 63933 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 63872 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 63811 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 63750 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 63689 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 63628 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 63567 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 63506 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 63445 29 96.6 0 A............................ | A [63418] ========== ====== ====== ====== ============================= ========================================================================== ================== 15 29 99.5 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGGGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 81967-80474 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEXB01000018.1 Salmonella enterica isolate STY33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 81966 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 81905 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 81844 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 81783 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 81722 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 81661 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 81600 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 81539 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 81478 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 81417 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 81356 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 81295 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 81234 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 81173 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 81112 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 81051 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 80989 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 80928 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 80867 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 80806 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 80745 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 80684 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 80623 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 80562 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 80501 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //