Array 1 301628-302144 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007268.1 Ectothiorhodospira haloalkaliphila strain Halorhodospira halochloris str. A chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 301628 29 100.0 32 ............................. GTGGTGCGCATAGTGATCCGCAACCGCCTGGA 301689 29 100.0 32 ............................. GTGTGAGGGGGAGGGGTGCTGTATCTACTGCG 301750 29 100.0 32 ............................. TCCAGCGCCTCCACCCGCCCCATGTCGCCGTT 301811 29 100.0 32 ............................. CAAACCGGCAACGTCTTTCTTCTGGTTCCCAT 301872 29 100.0 32 ............................. CGCCTTCTCCGCATCGATCAGCATCTTCAATC 301933 29 100.0 32 ............................. CCATTGGCGTATGAGGCCGATGGCATAAAGAG 301994 29 100.0 32 ............................. CGCATGAGCGATTGGCGTGCCATGATCCCCAC G [302004] 302056 29 100.0 31 ............................. GCTGAGGCCATCCGGCCTGTGGCAAGGCGGC 302116 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 CCGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : GGCGAGATAGATCCGCCGCCTCCGGCACCCGAGGCCATGCCACCGGCGATTCCCGAGCCGGAATCCATCGGCGACCAGGGACACCGGAGCAAATGACATGGCGATGCTGGTGGTGGTAACCGAGGCGGTGCCGCCGCGCCTGCGCGGCCGGCTGGCTGTATGGTTGCTGGAGATTCGCGCCGGCGTCTATGTTGGCGATGTCAGCAAGCGCGTACGCGAGATGATCTGGGAGCAGGTCGACGCCCTGGCCGAGGATGGCAACGTTGCCATGGCATGGGCCAGCAACCATGAATCCGGTTTCGAGTTCCAGACTTATGGCGCCAACCGACGTGAGGCGATCGATCATGATGGGCTAAGGTTGGTGAAATTTCTGCCCCCTCAGTCAACTGATTGATTCGCCGAGATCTTTAACAATTCGGTCTGTTTGAAAAGTAAGCAAAATCGTTGGTGGAATTCCCGCTAACGATTTTCTTCTTTGTAAACAAGTGGCTACAATTGGA # Right flank : GACCTGGCGCCGGGCCAGCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGACGGTACGGTCGGTACGGTACGGTACGGTACCGTACGTACCGTACGTACGTACGACGTACGACGTACGTACGTACGTACGTACGTACGTACGGTACGTACGTACGTACGTACGTACGTACGTCGTAACGACGTACGACGTTACGACGACGACGCGCGAGCGAGACGACGACGACGACGACGGTAGGTACGGTACGTACGTACGTACGTACGTACGTACGTACGTCGACGACGTACGTACGTACGTACGTACGTCGACGTCGTACGTACGTACACGTACGTACTACGTCTACGACGACGTACGTACGTCGTACGTACGTACGTACGTACGTCGTCGTCGTACGTACGTACGTACGTACGTACGACGTACGTACGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3046380-3046038 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007268.1 Ectothiorhodospira haloalkaliphila strain Halorhodospira halochloris str. A chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3046379 29 100.0 32 ............................. TGGGACGAGGGATTCGACACCCAGCAGTAACA 3046318 29 100.0 32 ............................. GGGAGCGGGTAACAGTGGTTCCCAGGGAACTG 3046257 29 100.0 33 ............................. TTTTCGAGGATGCCCCAGAACCGGAATGGCAGG A,G,C [3046231,3046239,3046252] 3046192 29 100.0 33 ............................. CCCGAGCATGACCCCCGAGCAGTGCCAAGACAT A,T [3046167,3046189] 3046128 29 100.0 32 ............................. CCGGATTCTTTGAGCAGCCGACGCGCCTTGGT C [3046111] 3046066 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 100.0 33 CCGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : CATGGTGGGTTACCGTAATCAGAACAGTTACGGACACATCGTCACCATTGAGGACCCCATCGAGTTCGTGCACTCCCATGTGAATTGCCTGGTCACCCAGCGCGAGGTGGGGGTGGATACGGAAAACTACGAGATTGCCCTGAAGAACACCCTGCGTCAGGCACCGGACGTGATCCTCATCGGCGAGATCCGTGATCGGGAGACCATGGATTACGCCATCGCCTTCGCCGAGACCGGTCACCTGTGTCTGAGTACGTTGCACGCCAACAGCACCAACCAGGCGCTGGACCGCATCATCAACTTCTTCCCCGAGGAGCGGCGCCAGCAACTGCTCATGGACCTGTCCCTGAACCTCAAGTCGGTGATCTCCCAGAGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGGCACGCCTGTGCCTCACC # Right flank : TCTCCCGCCGTCTTGATCGCCAGGCCGGTCATCRCGTTCCCCGCAGGCGCGGGGATGAACCGCCATTCCAGCACTTCTTGGTGCGCCTGGGTAACCGTTCCCCGCAGGCGCGGGGATGAACCGCTGGGCAGTAAATACAGCTTTTTGTATAGCCCCCGTTCCCCGCAGGCGCGGGGATGAACCGATCCTCAAGCCCCCTGGCGCCGCTCTGCTGGTCCGTTCCCCGCAGGCGCGGGGATGAACCGCAGCTCATCGAGGTCAGCATGGACTCGGTGGACCGTTCCCCGCAGGCGCGGGGATGAACCGAAGGACATTGAGACAGCGATCATGGCGATCCGCCGTTCCCCGCAGGCGCGGGGATGAACCGTGTGCGCATTGTGCTGCCGTATTGATTGGAGCCCGTCCCCCGCAGGCGCGGGGATGAACCGGGCAGATACTGATATTGCCGCGCTCAGGGCGCCCGTTCCCCGCAGGCGCGGGGATGACTTGCCCCCTTCATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //