Array 1 11483-10376 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLUB01000016.1 Pseudomonas aeruginosa strain WH-SGI-V-07273 WH_SGI_V_07273_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11482 28 100.0 32 ............................ GACAAGAAACTGTTGGCCGAGCATCGGCACCG 11422 28 100.0 32 ............................ TGCAGCGCCGCGAACGGCAACGGCGGCGACGG 11362 28 100.0 32 ............................ TGGAACGCATTGCCTGCCTGCGTAAAGAACTC 11302 28 100.0 33 ............................ TGTGCCGTCCGCGATCTGGCGGATTGCCGGCTA 11241 28 100.0 32 ............................ AATCTGAAACGCATTGGCGAAATACACCACCG 11181 28 100.0 32 ............................ ACTGTTCGAGTCGCGAATGACTCGGTGAACTA 11121 28 100.0 32 ............................ AGAACGAAAACTGCTAGCGGCGACGATACCCG 11061 28 100.0 32 ............................ GCCCACCAGCTCAGTCCAGGCGCTGCCGGAAT 11001 28 100.0 32 ............................ ATGCGGATAAGGCCCGCAGGCGCCGAATTGGC 10941 28 100.0 32 ............................ CAGCAGCGGCTCCAGGAAGAGGGGCGCTGCCT 10881 28 100.0 32 ............................ AAGAGTCGCGGCGACAACTACCAGACGTCCGC 10821 28 100.0 32 ............................ GTATGGCTCTCTCCATTGGGGTGGCGATACTC 10761 28 96.4 32 .......A.................... GATCTGGGGCGGCATCATCACAGCAGAATCTA 10701 28 100.0 32 ............................ ACAACATCAATCGCCTGATGCTGGGGCACCTG 10641 28 100.0 32 ............................ AGCTTCGGCACCCTGATGCGCGCCGTCGAGGG 10581 28 100.0 32 ............................ AATGCGGTCCTGCGCATCCGAACTGGTAAGTG 10521 28 100.0 32 ............................ GACCCCCGGAGGACCAACCGTGGACAACGACA 10461 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 10402 27 92.9 0 .....................A..-... | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : GTGCCGGTGTCAAGTCTTTTGCGCAAATCACGCAGGGCTTGAAACCGTATATGGGACAGTACGTTAGCTCTTTTCGGGCCCGCTTTGCAGAACCACGGCTTCGTCGGCTAGGAGCCACATAAGAGCGTCGGGGGAGAAAGCCGCATCGCACTGTGTCGTGCTGATTGCCGAGGAACGGCGGGCCTGTTACGTCATCATAGCCCAAGAGGCTTGGCGGCATCCAGAATGAAGAACGCGCAGCCGGGGCTGCGCGTTCGATGGATGCCGTTGGCATGCGACGTCATCATGTCGGCTTCGATGGCGTGCTCCGGGTCGCCGTGCTCTTCCTGAATCCCCGATCCCCCGCCATGAACGCCTCCAGCATGTGCGGGATCAATTTCTCTGCATCGACCGCCTCGCCATACGCCTGCGCGTGCAACGCGGCGTAGCGTTCGAGGTCGGCTTTCAGGCTGGCCGGGCAGGCAAAGGTCATCTTGACGCTCTCGGTCTTGGGCAGTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 455-1022 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLUB01000019.1 Pseudomonas aeruginosa strain WH-SGI-V-07273 WH_SGI_V_07273_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 455 28 100.0 32 ............................ AGGTCGAGGTGGGCTCGGCGGCGATGATCGAT 515 28 100.0 32 ............................ GGTACGTGGTTTCGACCAACAGCACTGCCCAA 575 28 100.0 32 ............................ TAAAGGAGATTGCCATGCTGATCAAACTTCCC 635 28 100.0 32 ............................ GTCAGGGTCGTGCATGACTCCGATGTGGTGGC 695 28 100.0 32 ............................ CGTCCAGAACGTCACACGCTCGCCGTCGATGT 755 28 100.0 32 ............................ AACCGGAGCCTTCGGGCCGCGTTGGGATCCAC 815 28 100.0 32 ............................ TTGACTGCTGGGGCCTGACGCTCATCGCGCGG 875 28 100.0 32 ............................ GCGACCCTGGCCAGGGCGGCGTCGCGCTCTGC 935 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 995 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 142971-142222 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLUB01000007.1 Pseudomonas aeruginosa strain WH-SGI-V-07273 WH_SGI_V_07273_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 142970 28 96.4 32 ..C......................... TAGCTGATCAGCAGGCCGACAGTCAGGCCTGC 142910 28 100.0 32 ............................ TACCCGAATACGACTTGCGCGAGGAAGACGGT 142850 28 100.0 32 ............................ AGCATCGCATCAAATCGTGCAGAACACGATAA 142790 28 100.0 32 ............................ TGGTCGAGCAGTTCGGCAAAGGGGCCGTGGTT 142730 28 100.0 32 ............................ TTCACCTGGTCGCCGGCCAGGCTGATCACTGC 142670 28 100.0 33 ............................ TACAAGGTCATGGCGCTCGGCAACGTGGTGGAA 142609 28 100.0 32 ............................ GCTGTGCGTCGCCGTGGTCTGACGGTCGAATC 142549 28 100.0 32 ............................ AGCAGATACCCGAACCACTGGAGGTACATGCA 142489 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 142429 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 142369 28 100.0 32 ............................ AGACAATCCGGACCTGCCGCCCAGGACGATCT 142309 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 142249 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGTCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //