Array 1 108328-106284 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXPN01000011.1 Salmonella enterica strain BCW_1515 NODE_11_length_176855_cov_3.51468, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108327 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 108266 29 100.0 32 ............................. CACATGCACCTTTTGAGCCAGTAATTGACAGG 108205 29 100.0 32 ............................. CTTGGAAAAGACAACAATATATTGGTAAATCA 108144 29 100.0 32 ............................. GTCACGTACTAGTGACGACATAGACAGACTGG 108083 29 100.0 32 ............................. CGGCGGGACCCCGCGATTTTCTCCCTGACGAA 108022 29 100.0 32 ............................. CCTTGTGTTGCTCTTTGAATTGCTGCGCCATA 107961 29 100.0 32 ............................. GCGTCTCCCCTGTAATTGTGACGCTGTCATCC 107900 29 100.0 32 ............................. GGCGTAATACATCATCACGCACAATGACCATC 107839 29 100.0 32 ............................. TTGATATCCGCCTCAACTACTACGAGGGTGAA 107778 29 100.0 32 ............................. TTTCGTCGGAGCTGGTGGACGTACTGGAACAG 107717 29 100.0 32 ............................. AGACACAATACAGCGTATCCACCCCTGAAGAG 107656 29 100.0 32 ............................. CTGAGGTTGAGCCGCAAAAGATTGTGACTGAT 107595 29 100.0 32 ............................. TAGGCTTCTTTCAGCCTGGCGGCTCGTTTACC 107534 29 100.0 32 ............................. AATGTTGCACTCACCTCTCTCGCCACAAAACC 107473 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCATCTGTGCCG 107412 29 96.6 32 .............T............... CCGCGCTGGGCCAGCCGCATAACGCTGGAAAT 107351 29 96.6 32 .............T............... AAAATGAACTCACCGCCTACAAAGACCAGTTG 107290 29 96.6 32 .............T............... CCAATACGTATACTGACAACAGTATTACTGAC 107229 29 96.6 32 .............T............... TACGCCCCGAACGCGGGGCTGGCTGCTGACCA 107168 29 96.6 32 .............T............... GTAATCCGCGCTTACGATACAATGATGGTCGC 107107 29 96.6 33 .............T............... ACGACGAATGCAGCGCAGACTACTGGCGCTGAC 107045 29 96.6 32 .............T............... GCGCTATTCCTACCCCCACACCCCGATCCCCC 106984 29 96.6 32 .............T............... CCGCGCCTTATCGTCGTACATACCCGGCGGTA 106923 29 96.6 32 .............T............... AAAATTGTATCATGTTTGGATTGCTGACAGAT 106862 29 96.6 32 .............T............... GCTGAGTAGGAACACATATTAACCGGCCCTTC 106801 29 96.6 32 .............T............... CGAAAAAACGGGCGCTGCGGGTCATTTTCGAA 106740 29 100.0 32 ............................. ATCCGCGCCTTTCCACGCTTAAACGTTACGTA 106679 29 100.0 32 ............................. TTGTACTGATCATCTTCCAGCCCGGCAAACGC 106618 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 106557 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 106496 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 106435 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 106374 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 106313 29 93.1 0 A...........T................ | A [106286] ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAATGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125601-124597 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXPN01000011.1 Salmonella enterica strain BCW_1515 NODE_11_length_176855_cov_3.51468, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125600 29 100.0 32 ............................. TTTTGTTTAATTCTAAAACGGGACAAATGGAA 125539 29 100.0 32 ............................. GGAACAACCATTCCCTCAATGAACGGGTTATT 125478 29 100.0 32 ............................. CGGACAGGCCTGCCAGTCGGGCAATATCCGTC 125417 29 100.0 32 ............................. TTGACGGCCTGGCAGCGCGTGACGTTATTAGC 125356 29 100.0 32 ............................. CCAGGCTGGTACTGTGCGCCATAAAGACGCCT 125295 29 100.0 32 ............................. CCGACCACAATCAGGGAACTGATCCAGCGTGG 125234 29 100.0 32 ............................. TTCAGATTGTCGCTTTTTGTTGCTGCCATTGC 125173 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 125112 29 100.0 32 ............................. CCTTATCAACTAATTCGTTCCTTGACACTCGT 125051 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 124990 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 124929 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 124868 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 124807 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 124746 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 124685 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 124624 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //