Array 1 12684-12068 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUAE010000054.1 Bacillus sp. Xin1 Xin1_contig000054, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 12683 29 100.0 36 ............................. GCATATAACGTTGCAACTGATAGATTATTAATGTCA 12618 29 100.0 35 ............................. TTAGCTTCTTCTTTGGAGTAAACTTCTGTTTTCTT 12554 29 100.0 36 ............................. TAAATTCCTTCCGCTACGCTCCAGTCAGACATTTAC 12489 29 96.6 37 ................A............ CTCAAAGTATGAGCACTTATCAAGGGAGTGCCCAAGA 12423 29 96.6 36 ................A............ AATAATAATGCAATTATTCAATATGTAGATGCAGTG 12358 29 96.6 37 ................A............ TTAAATGTAAAACTGATACTAGGCAATAAAAAAGAAG 12292 29 93.1 36 ..............G.A............ ACTGCTGTTAGAGTTTGAGTTTTTAAGATAACCTGA 12227 29 93.1 36 .............C..............C CAATACATTACATGGGATGGTCAATTACAAAATGCA 12162 29 86.2 37 ............T....C.....T....T TCAAAAGTTACCCTAAAGTAATAAAAAAGGTAATTTA 12096 29 89.7 0 A............GG.............. | ========== ====== ====== ====== ============================= ===================================== ================== 10 29 95.2 36 GTTTTATCTGAACTATGTGGGATATAAAG # Left flank : ACGGAAAACGTAAAATTCTTACTTTTTTTATTCGGTTTATTCTCAAAGATATATAGATTCTCTGCATATACTGCGTTTGATGTTTTTAGAGCTTCTTTGATAAAACTCACAAACATAAAACGATACGAGAGAGGAATTACTTTGCAAGTAAAGCTTACTTTCAATCTCATTATTTCCCTCCTTAATCTTCCATATAGAATTATTATAATGTATTCAAAAATTAAGATTCAATAAATCTGTAGAAATAAATGGAAAAATATTTCTGTGCAAAGAAAGATTTTTTTGCTTCCATATAGTAAAGATAAAAATCATGTGGTACTTTCATAATTTTGCAGTAAACCTCGTCTTTATAAAACATGCTGAAAACCTTGATATGACAAGCTCTTTCAGCATGTTGTAAGAGAATACAAAAACACAATCAATGGTTCGCTGCAAAATACGGATTGATACACATAGTAAAATGTTGATATCATAAGGTGTATCATCCGTATATGGATAGG # Right flank : TAACCTACTTAGCTTTATTAGGGTATCTTTGCCCATCCCCCCGAACTGGGGGATGGGCAAACAAATTATTGAAAAAATCTTTATAAATCAAGGGTTGTAACTTCTTTTAAAAATGAGTATGTCAAAACATATACATTTCAATTGAAACATTTCAAATAATTATAAGTCGTATTTTTGAAATGAAAAATTCTAAATTTTTAGCTATGTCATAAAGTGTATTTTTACAAACAAAAAGACCACAATGACTGAGTGGTCTTTTCCAACAAAGGATTAATGGCTATTTATCTGTTTAAAATGATTTCTGCTGCTCTTAAGCGAATTAGAGGATCTTCACTATCAAGATATTCTTTGATGACTTGTAATGCTTTCTCCTCAAGAGAAGTATCACCTTGAGGCTTTTTATTACCATTTATTACACCTAAGATGATTTCGTAGTGTTTAGTTAGATCCGCTATAGTTCCAGGATAACGCATTGAACCTTTTAGTTCCTCAGGTAGTTC # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATGTGGGATATAAAG # Alternate repeat : GTTTTATCTGAACTATATGGGATATAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 19416-20221 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUAE010000054.1 Bacillus sp. Xin1 Xin1_contig000054, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 19416 29 100.0 37 ............................. GTAAATGCCACGCCTCAAGATGGTGGTGTAACAAAAG 19482 29 100.0 35 ............................. ACCACGCTTAAACTAATAGCTTCCTCAACTGACTT 19546 29 96.6 35 ...........G................. ACCACGCTTAAACTAATAGCTTCCTCAACTGACTT 19610 29 96.6 36 ...........G................. TTTGATAGGAACAAGTAAATGCCGATTGGTATACCA 19675 29 93.1 34 .........A.....C............. ACGACGGCTATCCTTATGTTTGGGCAGGAAGAGC T [19703] 19739 29 86.2 36 .........A....TA.......A..... GATCGTATAGATATAGACGATACAAAAAATTCTGTT 19804 29 89.7 35 ..................A....A....G GTTGATAACCCAGCACCCGGAGATTTAGTATTTTT 19868 29 82.8 36 .C.......A.....A.......A....G AATGAATTGAATGTACTTAACATACAAAACTCCCCC 19933 29 89.7 36 .G.....................A....G TACTGTTATAACGACAACACGTATGTCGACGAGGTA 19998 29 86.2 37 .........A......AC.....A..... GATACAATGTAAGGTGAACAGCCATTGTTTAAGTTGA 20064 29 96.6 36 .......................G..... GCATCAATGATCAATGTTAAGTTTTGAACAATTGTA 20129 29 86.2 35 ..........C.....T......A....G TGGTAATATCTTAATAGATTTCCAGCAATGCGTCA 20193 29 86.2 0 .C.............A....A....G... | ========== ====== ====== ====== ============================= ===================================== ================== 13 29 91.5 36 GTTTTATCTGAACTATGTGGGATTTAAAT # Left flank : AAACTTCCACTAAACGATATGGGAAATACAGAAGCACAAAAGTTGCTGCGTGATATTGATAATTATCAAGTTATTCCCTGTTCTATATATGTAGAGAATCGTGAGCTATTTACTACATTTAAACAGGAAAAAGATTCGAAACAGCGAAAATTATTACGAATGCAAATCGAAAAGCTTACAACCTCTATTTCTAGAAAACAGGTTCAACGATACGGAATCGAAACAAAAGAAATTGATATTCCCGGACTTCAATACATTCACCTTTTAAATTGTAAGTACGATTTTGATAAAGAAAAGATAACAGGAACAGGAATTGTACTTCCGTAATTTTGCAGTGAACCTCGTTTTTACAGAAAATGCAGAAACCCTTGATGTGACAAGGTCTTTCGGCATGTTTTAAGAGAATTCAAAAACACAATCAATGGTTCACTGCAAAATACTGATTGATACCTATGGCAAAATGTTGCTATCATAAGGTGTATCATCCGTATCTAGATAGG # Right flank : TTTTTAAAAGTATTAATACTGTTGTTAGCGAAACACTTAAGAAGAGCTTGTGGTCATAAATTTTTAGAGGAAGCATCCAAATAGGATGCTTTTTTCTTTGTTATATAAAATTTATATAATAAACATGAAATTGAACAAAGTGGACAATTGAAAATATAGTACCTCATATATTGATTCATAGCCAAAATGTTTTAAACAAACGTTTGTTTAATTTTTCCACAATTGATTTCCTCATCATATAAGTAAAAAAGAGATAAGAACACTTTTTTTAAGTGCATTATCTCTTTTCGAATATGCATTTCATATCCCATGTGAATTTACCACATATTTCAATGGGACTTACAGATTGCTCTTCAAAAAAATTATAACTTACATTTTGTGAAAAATATACAATTTTCAATCCTTTCAAAAATTCATGGTCATAATGTCAGTGACTTATATATATTAAAGAATTATATTTAGTGATAACAAGAAATTCATTTTCTTATAGTTTATTAAAT # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATGTGGGATTTAAAT # Alternate repeat : GTTTTATCTGAGCTATGTGGGATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //