Array 1 108985-108040 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAU01000001.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_2744 NODE_1_length_554022_cov_0.515499, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 108984 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 108923 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 108862 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 108801 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 108740 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 108679 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 108618 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 108557 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 108496 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 108435 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 108374 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 108313 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 108252 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 108191 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 108130 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 108069 29 100.0 0 ............................. | A [108042] ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126962-125654 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAU01000001.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_2744 NODE_1_length_554022_cov_0.515499, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 126961 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 126900 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 126839 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 126778 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 126717 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 126656 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 126595 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 126534 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 126473 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 126412 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 126351 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 126290 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 126229 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 126168 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 126107 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 126046 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 125985 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 125924 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 125863 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 125802 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 125741 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 125681 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //