Array 1 13668-14175 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMPO01000029.1 Rahnella aquatilis CIP 78.65 = ATCC 33071 GRAQ.assembly.029, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 13668 28 100.0 32 ............................ AGCACGATGGGGCTGCTAACAAATCCGGTTGC 13728 28 100.0 32 ............................ GAGAGCGCGGTTGCGCCCTGGTCAGGCTTGCC 13788 28 100.0 32 ............................ TGAATGGGTGAAAGAACCAGAATCAGCAGAAG 13848 28 100.0 32 ............................ GCACAGGTTGGCATCGCGCAGGTTGGCACCGC 13908 28 100.0 32 ............................ GCCGCAAACTATCCACTTGTCATTAATCCATT 13968 28 96.4 32 ....................T....... ATCATGCAGGAAGATCAGGGCCAGTTGTTCAC 14028 28 100.0 32 ............................ GCAGAAAATTCAGCAGTTTGTCCGCTGCCTTT 14088 28 100.0 32 ............................ AGAGCGTGAATTTGCTCGGCGGTGAGTTTTGA 14148 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTAGATTCGGTGACGAAAATCTAACGTCAAGGTCGTGGGCTCGCCGCCCACACTGGCCCGGAGACCCGCAATCGCGCGGGCCTCTGGACTCCACGCTCTTTTCACTGCGCGCTGTCGCAGGCACGACGGACATGTTCGGCCACTCCGGCGTATGGCGCAAAATCTTGCCGCTCAGCGGTGCCTTCATTTCGGGATTCCAGCCTGGGGTCTGGAACCTCTCATTCAGCAAGATTTTTGAGCACGCCAGTCTCGATCGAATAAAAACCCCGTTCTGATTCTCTCGCAAAATCAAATGCGGAAGGGTGTTGTCTTGCTCCGTCCCCTGCGAAGGGGAAGGCCGGGATGGGGTATGAATGGCATCTCGTCATTAACCCTCTTTTTTGCACTTCCGCTAAGTCATTGATTTTCATTAACCAATAATACCCTCAAAAAAGAGGGATTTTCTGCCCAAACAGCGATAATCTTTTACAGTTCAAAGCATAAAGCTGAAAATGCAACG # Right flank : AACACATTCAGCGCTCGCAAAGGCTCATTGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 116-565 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMPO01000169.1 Rahnella aquatilis CIP 78.65 = ATCC 33071 GRAQ.assembly.169, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 116 28 100.0 32 ............................ TGAACAAACGACATGGCCACCCGAGCGCATTC 176 28 100.0 32 ............................ AGCAAGGTAATTATCAATCCTACCCATACCAC 236 28 96.4 32 .....T...................... AGAACCAGACTGATAAAGGCGCCTGCTTTGCC 296 28 100.0 32 ............................ GACATCATGGCGGCTCTGGGCATGACGCAGAG 356 28 100.0 32 ............................ CGGTATAATACGGCTGCGGGGCATTGCCGTAA 416 28 100.0 32 ............................ AACTGGCAACCAGTTGTAAGGTTTTTCACCTT 476 28 100.0 32 ............................ TGTTTGTAGATTTCCAGCATCTGCGCGCTGAG 536 27 92.9 0 .......................-.C.. | GCC [555] ========== ====== ====== ====== ============================ ================================ ================== 8 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCTCCGCTAACCCATTGATTTCTATTAACCGCCAATGCCCGCAAAAAAAGAGGGTATTTCTGCCCAAACAGAGATAATCTTTTGCAGTTCAAAGCCTAAAGCTGAAAACGCAACTG # Right flank : CTCATTGCAAATCCTAAAAACTCTCTGGAAGCAGTATCCCATTCCCGCGATTTGCCCATTTTTAATGTGTGGATATCCAGTTATTGTCTCCTCGCTGCGGCAAAATCCGCAGTCAGGCTTAGGAACCTGTATTTTCGAGCGCGGCACTTTTATAAGTGTTGTCGGTATGTCTCAGCTTTATAAAGCGGATCCGTTACTGCATTATATTGTTCTGGTGACTCAGACAGGGCAGTCTTCGGACTGGTCGGTAGCCTCGGAATCGATTCCTAACCCTGTTTGAGTTGCCACCTTTGAGCTTAGGAACTCGGGTGGTGACAGTGACTTCCGATGGAGAAAACTCAATGACAATTACTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2-329 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMPO01000030.1 Rahnella aquatilis CIP 78.65 = ATCC 33071 GRAQ.assembly.030, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2 28 96.4 32 ..........................G. TTTGTGCGGATTGAAGCAGCAGAACGCCGGAA 62 28 100.0 32 ............................ CACGGAAGCCGATCTGTATCCCGAAGAAATCA 122 28 100.0 32 ............................ GGATGAACGGAGCGGCGCTGTGCGCGTGTTTC 182 28 100.0 32 ............................ TTGCCATGGCTCGATAGCTGTCAGCATAAGCC 242 28 100.0 32 ............................ TCTTATTTTACTCGTTTAAATGCATAGGTTCC 302 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TG # Right flank : AACATACCGCATCGGTATGCGTTCGACGTTCTGGCCAGGCAGATGACTGCCGCCCGTAAAAGCACGCTTTACCCGGTAAACTCATCCTTATGAGAGAAAAGCTTTTAGTCACAGTTTCCTACAGAGAAGGCCGGAATATTCCGGCCTTTTTTTATTTTTAATCAATAATTCCCCCGTTACAGAATTTTCATGCTGTACAAAAATTGACGATAATTTGACTTAGGGATAGGTTGATTCCACTGCTAATGCAGTAGGTTAGCCAGCATGTTTCGCGCTGGCTCTCTCTTTAAAATGGAGTTTAAAACTATGGCTATTCCAGCTTATCTATGGCTCAAAGACGACGGCGGCGCGGACATTCGCGGCTCTGTAGACGTTGCGGGCCGTGAAGGCAGTATCGAGATCCTCGGCCTGAATCATGGCGTCAGTATTCAAACCGACAACGCCACGGGCAAACCTACCGCTACCCGCGAACATTCCCCTTACAGTTTTGACAAGGAGAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 177-1345 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMPO01000031.1 Rahnella aquatilis CIP 78.65 = ATCC 33071 GRAQ.assembly.031, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 177 28 100.0 32 ............................ TTGGATAATCTCAGGGAACTTCTCCCAACATT 237 28 100.0 32 ............................ GTACTTAGGGTCTTGCACATCCTGATACCAAT 297 28 100.0 32 ............................ TAAGGCCACGTGGGAAGTTGCGGCAAACTCAT 357 28 100.0 33 ............................ AAGTTACGACCACATCACACACAACACGCCCCG 418 28 100.0 32 ............................ ACCTTCCGTCCAAGAACTTAGGAAGTGTTCGA 478 28 100.0 32 ............................ AAACGGCGATGGCCTGTGTGGGCGGATAGAAA 538 28 100.0 32 ............................ TGGGAAACAGACACCAACAAGCTAATGAAGAA 598 28 100.0 32 ............................ TTTGACCAAGAATCGGCAGACTTTCTTACATC 658 28 100.0 32 ............................ GCCGAACATCCGCGCCTGATAATCTGCGTGTG 718 28 100.0 32 ............................ AATCTAAAAGAGTTCGGTTATCAGATTTTTAA 778 28 100.0 32 ............................ AAGCTCTCAGGAGATTTTGGGTCATCGATAAC 838 28 100.0 32 ............................ AAGCGGATCAAGGGCGCACCGGACATTAAACG 898 28 100.0 32 ............................ GCGCTTTATCAGATGGGTCAGGCGTTCAGTTC 958 28 100.0 32 ............................ GCGTGATGCCAACAGCTCTGCGCGAACGTCGG 1018 28 100.0 32 ............................ TGAGCGTGGAAGAAGCCCGAAAAGTTAAGCAC 1078 28 100.0 32 ............................ GAAAGCACCCGAACCAACGGGAAAGAAAACAT 1138 28 100.0 32 ............................ AATCAACATTATTGTTAGCCCAATGATTCCTT 1198 28 100.0 32 ............................ ATAACGCCATGACTAGGATTTCCAGCGCTTGT 1258 28 100.0 32 ............................ GCTATATCTGTTGTCTCAGTCATAAGGCCTCC 1318 28 85.7 0 ....................AAA.A... | ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCGAAGGGGAGGGTTGGGGTGGGGTATTAATGGCACCTCTGAACTAACCCTCTTTTTTGCACCTCCGCTAACCCATTGATTTCTATTAACCGACAATGCCCGCAAAAAAAGAGGGTATTTCTTCCCAAACAGCGATAATCTTTTACAGTTCAAAGCATAAAGCTGAAAACGCAACTG # Right flank : ACCTATCCCCGCCCCAAATACTCAACGGAATAAATTTAACAGTTTAATTAATTCACTAATGATTCACATCTGAAAACAAAATAAAATTTACTCACGCAAATTTATCCAAAAACAAATGCATCAAACCGTTGATGTTTTTGAAAATGGGATTATTTTAGATCCGGTCATTTCTCATATGAAAGGAACTCAACATGGCCAACGCATTGATGCCCGCCGAGTTAAAAACGATCCTCCATTCCAAACGTTCAAATATTTATTACCTGCAATATTGCCGTGTATTGGTCAATGGCGGGCGGGTTGAATATGTCACGGAAGAAGGGAAACAGTCGCTGTACTGGAATATCCCCATTGCCAATACCACGGTGGTGATGCTGGGAACCGGCACATCAGTGACGCAGGCGGCGATGCGTGAGTTTGCCCGCGCGGGGGTGCTGGTCGGGTTCTGCGGAGGCGGAGGAACGCCACTTTATGCGGCGAATGAAGTGGAAGTGAATGTCTCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11824-12030 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMPO01000031.1 Rahnella aquatilis CIP 78.65 = ATCC 33071 GRAQ.assembly.031, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 11824 28 82.1 32 CA.TG.......A............... GCGTGGTATTCCTCCATCAGCTCAATACCAAT 11884 28 100.0 32 ............................ CAGCTTCCCGGCATGATGCCGTAGTGCTTTGC 11944 28 100.0 31 ............................ TCCCGCGCAGCATCAGCAGGAGAATTCACCG 12003 28 85.7 0 .........T..A...A......C.... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 92.0 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : TTTTACCGTTTACAGACTTGGGTAAGTGCTATCCATGACCTGGGCAAGAATGATGATATGAGCCACAGTGTACAGCAATGACAGAATCATAAGGGGCTTCGTAATATGGCCCATATAACACTTAGCAACGCTAGGACATTGGGAATATCCTGAAGGCATCATAGACTGAAAAACTTTGAACACAAATACTGTGGATATATTGAGGAAAATCAGAAGGGAGCGAACCGGCGAGCACATTCAACCACGAGGCATCTGACCGGTTGCTGTCGTGACGATGAAAATATAATTTTGGTTGTTTTTGGTATCAAGAGAGACAACGAACTTCATGACTTAGGATGAAACCAGTCATTTGCACTTCCCCCTCGTCATAAAAAAAATCTCCCCAAAATCATTTTTAACTATATGAAATAAAAGGAATTTATTTAACACTTCAAAGCATGTTTTTTGCATGGGAAATGTAACGTATCTATATGATTTATTGAGTTTAAGTTGAGTTTTTA # Right flank : ACCGTTGGCCGCAGGAACTGGATAAGCCCATTATCAATCATTTTTACGGAATCATGGAGAATCAGGAAAGAATGAAAAAAAGTGATTACCACAAACTTTGATGCCACCCTTAAAGGTATCTGGCACTTTATGTGTAAACCCCTATCACAGCAGCACAGGAAACCCCGCCACCATCTCAGCGGTAGCAGGGTTAGGTAAGACTTAGTTTTAGGATATGGTCACTTTGAACTCATAGTCTCCTGAGGCAAACGGCAGTTTTACCGGCGTTTGGTTCGGCGTGGTGTACAGAATTTGCAAGGCGGCTTCGCCAGGACTAATACCTGTCATTTCAGTATTCATGTACAAGATTTTATCATCTGAGAAAATTGCCTGTCCGGTCGCAACAAAAATATTGGAGTCTGTTGATTGTACGGTAAAATATTCAAAGCCACTATGTCCGGAAAAATAGCTTGATGTATATGTATCTAACCCTGTGCAGAGGTATATTTCAAATATATTAT # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //