Array 1 114830-118276 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWTW01000006.1 Bifidobacterium callitrichos strain UMA51804 NODE_6_length_139371_cov_180.641, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 114830 29 100.0 32 ............................. GGTTCGCGGTTGATCTGGTCTGCATCGGCGGG 114891 29 100.0 32 ............................. CCGACGGTGAGCACGTCGAACGCCTGCTGGGC 114952 29 100.0 32 ............................. CAGGGGACCGCCGAGCCGCCCGACCACGAGAC 115013 29 100.0 32 ............................. TCCACGACGCCCTGCCATGCGTTGGACAGGAA 115074 29 100.0 32 ............................. CGGCCGTCGTCGGCGGGCAGGTCGCTTCTGCT 115135 29 100.0 32 ............................. ATGCCGCAGTCGATATCGCGCATGCTCGGAAA 115196 29 100.0 32 ............................. GACCACGCATGCGATTCATCCACCTCGACCCA 115257 29 100.0 33 ............................. ACCACGACAACAGGATCGCATACGAGGCATGGC 115319 29 100.0 32 ............................. CCGGTCATGACCGGGAAGATGGAGACGTGGGC 115380 29 100.0 32 ............................. TAGGAGCCGTGACCCTGCGCATACCAACGCCC 115441 29 100.0 32 ............................. TCTCCATTGGACAGCTTGCAATATCCATATGG 115502 29 100.0 32 ............................. TAGTCGTGGTAATCCATGAGGAGGATCCACCC 115563 29 100.0 32 ............................. GCCGCCGACGATCGGGAGGTTCTGGATGAGCG 115624 29 100.0 32 ............................. ATCACGAGGTCGCCCGGCCGTGCGGACGCCTT 115685 29 100.0 32 ............................. GCGTTGGGTAGGGCCCGGCCCCGTTCCCAGCG 115746 29 100.0 32 ............................. GGGTCCGGCTACTACGCCGCCTCGATGGTGCT 115807 29 100.0 32 ............................. CCAACGAGAAGTGGCCGACTCGATCGGCATGA 115868 29 100.0 32 ............................. TAGTTGGTGAACAGGTCGTAGGACAGATCGGG 115929 29 100.0 32 ............................. GCGCTCGGCTACGACACCGTCACCTCCGTGGA 115990 29 100.0 32 ............................. AACAGGCCGGCGGCGTTGCAGTCCATGTAGTA 116051 29 100.0 32 ............................. GGGATCGGCACGTTCGCCCAATCCACCGGCAT 116112 29 100.0 32 ............................. GTCCCGGTGATGAACCCGACCACGGCCTGCAC 116173 29 100.0 32 ............................. CCTTCCCGGTCATTGGAGCCTCCATTCTGCAG 116234 29 100.0 32 ............................. TCGAGCCGGTCGGGGTCGTCCCAGTCCTCGAT 116295 29 100.0 32 ............................. CCACCCGTGCGGATGGCTCAAAACTTGGGTTC 116356 29 100.0 32 ............................. GAGCAGTACTACACCACCAACCTCGCCAAAGC 116417 29 100.0 32 ............................. TCGACGAGGCCGGTGACGAGCGACTGGATCGC 116478 29 100.0 32 ............................. GCCACCGTCGCCATCGTCAAGGACGGCAACAC 116539 29 100.0 32 ............................. GCCGCACTAGCCAAGGGCGTCACCACGACGGC 116600 29 100.0 32 ............................. TACTTGGACGGCACTACCGACGAAGTGTGTGT 116661 29 100.0 32 ............................. CGTGCGCGCGACGAATGGGAACGCTGGTGCGC 116722 29 100.0 32 ............................. GGAAGCATGACCGGGAGTTTAAGGAAATTCAT 116783 29 100.0 32 ............................. GTCACGTTCGGCACGAAATCGGTCGGAATCGA 116844 29 100.0 32 ............................. AAGATGGCGAGGGCGGCGACGAGCGCGGCGAC 116905 29 100.0 32 ............................. AAGTGGTCGCATGCGATCGGATGGCGCGGCAC 116966 29 100.0 32 ............................. GGCAGGACCGCGAAGGTCACCGCGACCATCCA 117027 29 100.0 32 ............................. CTCACGTTCCCGGCGTCGTAGCCGGAGACCTT 117088 29 100.0 32 ............................. GTGAGGGCGCTGCCTATCCGGTTGTGGTAGGA 117149 29 100.0 32 ............................. GTGAGCGTGGTTCCTGCGGTGGAGTCCAAGAG 117210 29 100.0 32 ............................. ACCCTCACCGTCACCTCATCCGCCCCCACGAC 117271 29 100.0 32 ............................. GCGGCGAGCATGGTTTCCTTTGGCACTTGGAT 117332 29 100.0 32 ............................. TCATCAACCACGTCACAGGAAACGACCAATGA C [117341] 117394 29 100.0 32 ............................. TTCGTGACCATGCCCGACACCGCGCCACCGAT 117455 29 100.0 32 ............................. GCCAAGCCCCACCCCTCCACCCCGAACCAGAC 117516 29 96.6 32 ............................T GGCTCGACCGAATCGGCATGCCCACCCTCCAA 117577 29 100.0 32 ............................. GTCAGGGTGCCGGTCTTCGGGTCGATCTGAGT 117638 29 100.0 32 ............................. CCGATCTGGGATGCCGCGTCGAGCACCGCCGA 117699 29 100.0 32 ............................. AACGTTTGGATGATCATTCGCTACTCCTTGAT 117760 29 100.0 32 ............................. ATCTCGGACAACATGGCCGAGGACCTCGGCTA 117821 29 96.6 32 ..................A.......... CCCCTGCCCGAAAACGGCCAGATCAACGAGAC 117882 29 100.0 32 ............................. ATCGCGACTACCCCGGCGGCCGCGGTGAGCGC 117943 29 100.0 32 ............................. CCGGACGCGCCGGGGATGGCGATAGCCAACAG 118004 29 100.0 32 ............................. TACTTCGCCTGGTCGATGACGAGGCTGCCCAT 118065 29 93.1 32 .............G..............T TGGCGTGGCGCTAACCTAGTTGCATGACACAA 118126 29 96.6 32 .............G............... GGGATTCTGGGCGCTACGATCGCTCGGAATCC 118187 29 96.6 32 ...T......................... GGCTTGGTCCATGCCACCACCCCACCGGTATC 118248 29 96.6 0 ...T......................... | ========== ====== ====== ====== ============================= ================================= ================== 57 29 99.6 32 GTTCGCCCCGCACACGCGGGGATGATCCG # Left flank : AAGGAGGGCACTCGCGTACGGCGTGCGTATGAGCGTGAGTCGGCGAGAACCGGAGTTCCCTGGAGCGGCCGGTCATACAAGGTGACCGATTTCGATGATGCCGATGAGGTGAACAGGGCGCTATCCGCCGCGAATACCGCCTTATACGGTGTGGTTCATGCGGTGATCGTCGCCTTGGGATGCTCTCCGGGGCTGGGCTTTGTCCATGCGAGAAACGAACGCAGTTTCGTATACGACATTGCGACCGAATACAAGCCAGCAGCAACGGCGGAACGGAGCACGGAAAACCGGATGGAGCAAGGCGTCCCGGTATCGCAGGTTCGGACGCTGACGGCGCGTTTGTTGATATGTTGGATACATCACGTATTGAGCATTGAGCTGAGCATTGCGTATTGAATAGTGAGTATTGAATATTGAGTTGCCGGAGCTGACAGGAAACGACTGTGCGAATCGATTTTTTCAGTGAACAAGCAGTCGCCATTTCGGCATAAAATCAGACT # Right flank : GCCGCCGAAGCTTGGGCCGAAATGACGGCCGCACAGATCACCAACCCACAGGAGTGGAGACACATCCAGAAATGGTTCCCCCAATCGTCTAGACTAATCAGCAGCATTAGAGGATGCGTTAAATGGTTGACCCGCTTTTCAAGAAGTTCTGCGAGAACGACGAGGGCATATCCGTCGGGGAGCTTCTCGACACCTACGCCAGTGCGTTCAACGCACCTTTTTTCTCCGTGGAAGAGCAGGGGCCATTCATCGCCGACGACGAACTCCGACAGTGGCTTGGCTGGTGCCTCTTCTACGGCAAGCCTCGTGACGAGTACGTTCGCCCCGCGCGCACGGGGATGATCCTGCTGGTTGTAGCCTTCGAAGCCTCTTTGATGAGGGGCTGTCAGCGAAGCTGACTGTGGAGGGTGCGAAGGCAGAGACTTGGGGACCTACAGACCTAGGTCCGCCGTGTCAGGGAATGGCCCTGCCATTCGATGCCGAACGAAGCAGCCGGCGTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCCCCGCACACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1995-663 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWTW01000003.1 Bifidobacterium callitrichos strain UMA51804 NODE_3_length_159666_cov_168.097, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================== ================== 1994 34 100.0 36 .................................. TCCTCCATGAGGCTGCCGAAGATCACCGGGCTGATG 1924 34 100.0 36 .................................. CTGGCTTTTCGCAGTGGGATTGGCCAGTGCGATCAG 1854 34 100.0 35 .................................. GGTTCAGGGATCGGCTGATGCCGGCGAACTGCCTG 1785 34 100.0 33 .................................. ATGTGCTGACTGCCGAACAGGCAAGAATGGCTA 1718 34 100.0 35 .................................. GGCAAGTGGGGTTTCCCTTTGAGTGGTGCGCGGAG 1649 34 100.0 34 .................................. AAGGAGTTCGCAGAGCTCCGCAGTCGGTACGCGA 1581 34 100.0 34 .................................. GGCTACCGTATCGGCGAGGCTCGCCGCCCCGCTA 1513 34 100.0 35 .................................. GATCAGTCCCAGCAGATGCAGGTCGAACGCATCAG 1444 34 100.0 34 .................................. AGTTGATCCAGCACCGAGTTCGCGTTAGCCTTCA 1376 34 100.0 34 .................................. AAACCGAGACGGCGCAAACCGACCGTGGAGGTCG 1308 34 100.0 33 .................................. GCGGGTGACCCGCGTCGTGCGAACGGGCAACAG 1241 34 100.0 34 .................................. GTTCCGGGGGGTGCTGGCGATCTGCGGTGCCAGT 1173 34 100.0 35 .................................. TCGCATTGGCCAGTGATCGTTTCATGGCTGGTGTG 1104 34 100.0 35 .................................. GCACGCTGAACGCGCTGTTGCGCCGCAGTCATGCT 1035 34 100.0 33 .................................. CCCCCGCCATTTATCACTACGTACTCGCACATA 968 34 100.0 35 .................................. ACTCAGTGCGGATGCCTGATCGCTGATAGCTTTCG 899 34 100.0 33 .................................. GCATGCGCTGATCCCTGAAACACCGGGACTAAC 832 34 100.0 34 .................................. TGGGAGACCGGTACTCCGCCACGATGGAGATCGT 764 34 100.0 34 .................................. CCGGTAGCCCCCGTATTCGCGGACACCGCCGACA 696 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ==================================== ================== 20 34 100.0 34 GTTCGCCCCTCGTAAGAGGGGCGTGGGTTGAAAT # Left flank : GAAGTGAAGTGACTGGACATGATGGTCGTAGTCGCATATGACGTAAACACGGAAACGCCGCAAGGCAGGAAAAGGCTGAGAATGGTGGCGAAGACCTGCATGCAATACGGTCAAAGGGTACAGAACAGTGTATTTGAATGTTTGGTTAGCCCATCTGACTACATACTACTTAAGACGCAGTTGCAATCGATCATCAATGAAGAGAAAGACGGTCTCAGGTTCTATAATCTAGGGAAGAAGTATGAAAGCAAGATTGAGCAGATGGGCACCATAAGACATGTTCCAACTGATTCTCCAATGATCATTTGAGGTGCGATCATTCGGTGATCATCAGAAACCCACGGTTTCGCACCGGGAAATTAGCTCGAAACAAGAGCGACTACATCGAAAGTGTAATATCATGGACGCTACTGGTAAGTGATTGACTGTTACAGTCAAGTCTTATGCAAAGTAAAAGGTCATAAAGACCAATATGTGAGATGACACGTCTCATCTCCGCA # Right flank : CTTTGAGTCTTCGCCAGTTTGTGTGGTGGGTTGTCGTGTCTTGGCGTTGTCGGGGCTGGTTTGTTTGCGGGTATGGAAGGGGCGTTCGCCTGTTAGGTTTGTTTCCGCCAAGAAATAGAACCGAAAAAGCAGAGGAACGCCCGTGCCCACCATATCAGCCGGCGCGCTCAAGCGCATGCTGCACCTGCCCGCCAATGTCGTGGCCGGAACGCCTCGCATCGAGACGGATCGCAACGGTGATGACGTCGTCATCGTCCCGGTGCGCCCGTATGCGGGCGACGCGGACCGGTGCGCGAAATGCGGGGAGCATGGCCGCCGGTACGACCGGTTGGGCGTGCGCCATTGGCGTCACCTCGACATCGGCTGCTCCAGACTGCTGCTGGAGCACGCGCCCCGGCGCGTCGAATGCGCCGAGCACGGCGTGACGGTCGCGATGGTGCCGTGGGCGAGAAGGAAGAGCGCGTACACGTATGACTTCGAGCAACAGGTCGCGTGGCTGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCCCCTCGTAAGAGGGGCGTGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.30,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA //