Array 1 59740-61088 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPIB01000020.1 Photobacterium carnosum strain TMW 2.2021 Photobacterium_carnosum_TMW_22021_contig20, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 59740 28 100.0 32 ............................ AAGAGCAGCCATTACGCACCTCAAGCGGTGTA 59800 28 100.0 32 ............................ AGTGCGTGATGCCCATACATCTTGCGGCTTTT 59860 28 100.0 32 ............................ TTAAATTAGATCTAACTAAACTTGTACCATTA 59920 28 100.0 32 ............................ TTACCAAAGAAAATGCTTTAAAAACAGCTAAC 59980 28 100.0 33 ............................ GACTGAATAAAACTGCCCGTTGTGCCAGTACAT 60041 28 100.0 32 ............................ ATTGCGCGTGACAACGTAAACAATAACGCCCT 60101 28 100.0 32 ............................ ACCATCACTAATTTCGATAAAGTAATTCATTG 60161 28 100.0 32 ............................ GGGTGCAGTTACTGAATATCATTTGGCTTATA 60221 28 100.0 32 ............................ CGATTCAGAAATGCCCGAATCGATTCGTAAAT 60281 28 100.0 32 ............................ ACTAGCGTTATCAGTTATCACACTCGACCACG 60341 28 100.0 32 ............................ TGAAGGTACAGATGGCGACCCTGAATTAGAAA 60401 28 100.0 32 ............................ GTAAAAACTCCAAACTTTGAACAGTATATGAT 60461 28 100.0 32 ............................ GCGAAAATATGACATTTCAATGTTTATAGCGT 60521 28 100.0 32 ............................ TGGTACGACGTTTCGACCGAATTCATCGACAT 60581 28 100.0 32 ............................ CATAGCCCCTAGCCAGTATTCTAATTTTTTTG 60641 28 100.0 32 ............................ AAGAACGATTGCTGATACTTATTGCTTGCAGT 60701 28 100.0 32 ............................ GTTCGTTAATTTCCCGAGCACAGTGCCGGACA 60761 28 100.0 32 ............................ TTCATAGCTACTACCGATAAGATCCGATATAT 60821 28 100.0 32 ............................ ATCATAGTTGACGATCAAGGCAATCCCAATAT 60881 28 100.0 32 ............................ TGAGTTGGTCTTATACACATGAGAGTCAGATC 60941 28 100.0 32 ............................ TGGGGCAGACGGTAATCCCGGTGCAGATGGTA 61001 28 100.0 32 ............................ TGAAGGCGGTCTAAAGCAATGGATGAAAGACC 61061 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTGTCCCGCCACATAGGCGGCTTAGAAG # Left flank : GACTTTAAGGGTGAAAAAGGGTTAGAAGCCTTAGCTAATTGGCTGCAAGATCCTAAGAAAGCATTTAGTGATAAACCTTCGCAAAATAGTAATACCGAGTATTACAAAGGGGTTTTTGATGCGTCTAAATATGGTGTCAGTACACGATCACCAGTGCTTACACAACGTTATGATGGTGTGTTTGAACTGTACATAAAAAGTGATGTAGAAACTGAAAGATTGATTATGGATAAAATCAAACACAGTGGGCGTCATTATTTACGTGTAGGTAAGTTATGTTTAGCTGAATTAACGCAATTACCTGCTCGTATTCCTTCAAATTATTGGGAAACGGTTGAAGATGATGCAGCCAAGAAAGGTTAAGTGAAATACCCTTTTTTATTCTGTAGTTGTAACTTGTTGATTGTTAATGGTGTATTTGTTGCCCTTTAAAAAAAGGGTAAACAAGCATTATTTACACAACATTATGTTTTATAATGTTTTTATGGGTTTAATATCCA # Right flank : GAATGCCGAATAAATCATAAGCATTGAAGTGAAGTCCATAAATATGACGATTCATTTAACTGGTTGCAAAAATAATCTATCAAATATCTCTTTGGGATAGATTTAAGGCAAAAAAAACGAGCAACTAACCGGATTGGGTTAATTACTCGTTTTTCTGTGAGTTATAAATTAGAAATTATCAAGTGCAAGAAACGGGTTGCCATTGCTTGTGTTGGACTGACTATTAATACCGATTACCGGCTCGATAGTAACCGGCACATCTGTTTTAGGTTCTTTACGCTTAGTAGTCTTTGGCTTCTTAATTTTAGATTGTATTTTAGGTGTCTCAGCCTGAATGTGGCTAAATGCATTTGGGATCTTATTTGTACGATGCCCTGAGTCGAATATATACCAACAGTATTCGCAAGAATCAGTGCCATTTTTAGTGAACTTTGGGCGAGGAATAAGGATTGGTGCTTTTTCAGGAAATCCTATTTCATTCCAGAACGGTATTCTTTTCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCCCGCCACATAGGCGGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 58962-57433 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPIB01000014.1 Photobacterium carnosum strain TMW 2.2021 Photobacterium_carnosum_TMW_22021_contig14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 58961 28 100.0 32 ............................ TAAAAAATTCCGAGCGTTTAAAGTGTCTTTTT 58901 28 100.0 32 ............................ CTATATAAATCAATGAGTTACGTGAATAATAT 58841 28 100.0 32 ............................ TGAAAGGCGTGGCGGTCATTCCTATAATGCGT 58781 28 100.0 32 ............................ TTCTGTCGGGCAATCCAGAAATCACTCACGCT 58721 28 100.0 32 ............................ CTGTCTGGTTTCGTTCTGTAACATCTGCATGA 58661 28 100.0 32 ............................ CTCATCATTCATTCCGAGTTTTCTTAAATACT 58601 28 100.0 32 ............................ TTGTAGTGGTGATACTGGTGGTGGTACTGGTG 58541 28 100.0 32 ............................ AATTGAAATAATTAAAATTAAAAAAGCGATAT 58481 28 100.0 32 ............................ AGCAACAATTTTAAACACTAAATCAAAAGTAA 58421 28 100.0 32 ............................ TGTTGATTATGTTGAAGTCGAAGTATCTCCAA 58361 28 100.0 32 ............................ AGTATTGGTTCTGTTTTGTTTATTGTTAAAAA 58301 28 100.0 32 ............................ AGGAAAAATTCCCAACTGGTCCACCGAATGTA 58241 28 100.0 32 ............................ AACTCCAATATAAGACTGCCCATCGATAACGT 58181 28 100.0 32 ............................ AGATAACTGCATCGACCGAAATATTTATAGGT 58121 28 100.0 32 ............................ ACCCCCTTGTGCATTATCAGCATAAGCAATGT 58061 28 100.0 32 ............................ TACGCAGCTCGCAAACACTATCAATCATAGAC 58001 28 100.0 32 ............................ TCTTTATACCTAACTGGTGAATACCACCAGAA 57941 28 100.0 32 ............................ TACGACTAGTACGTTTTTAGTTTATTTTTCGC 57881 28 100.0 32 ............................ CGCAGGACGTTGAGGAAAATATTGCTGAACTT 57821 28 100.0 33 ............................ AGCTACGGCACTTAACTAATACCTCTTTATAGC 57760 28 100.0 33 ............................ CTAGAACATCGTGCTCCATATACCGGAACAATC 57699 28 100.0 32 ............................ TTATGAGTGGACTGAGCTAAAAGACCCAGTGT 57639 28 100.0 32 ............................ ACCCGCCAATGCAAGCCCTGCCTCCAAAGCAC 57579 28 100.0 32 ............................ ATTTTCAACTCATCTAGGAGCCTCGGTATGGC 57519 28 100.0 32 ............................ GATGGCAAAGTTAAACACATGAAGTTCGTCGC 57459 27 85.7 0 ....................T..T-..T | ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TCTACTTCATTAGCTGAAAATAAGGGTGTCCCGCCACCACCACAAAAACCCACCAGCACCCCAGCTTTAGCTAATTCGCGCATTGCAGCTTGAGTGATCGATGTGCCAGTTCCGAGCATTATGGCTGTCGTGTTTGCTATGGGGATATTCCAATATAATGATTGCTTACCTTCGTCAGTGACATATTCAACCCGCCCACCATTCACTAACACGCGACAATGTTGTAAATAATAAAGATTGGCACGTTTTGAATGAATAATGGTTTTTAGCTCACTCGGTGTGAAAGACTTAGCGCACATAACGGTCACCAACAGTAAAAAACGCATTATATACATAGATACGCATAATGCGTTTAGAGTGTAATCACAAAAACCCTTTTTATTTGGCACTTATTCAAACCATATAAAACAACAACTTAAAATATCAGTTTAAAAAAGGGTTTTTCATTGAAATTTACTGTTTAGCTTTTATAAGCAATCACTTATACTAATTACGCTTCA # Right flank : TACTTACTGCTGCCATCGCTTCTTTGATTTCATCAGAGCTATAACCTTTTGATGACAGATAGGCATAGGCTTTACTTTTATCTTTAAAATTCGACAAATCAAACCGCTTTTTAGCTAATACTAATTGGCAATTTTCATAAAAATCGACCTCACCCGCTTCCTCTAAATCATAGAAGACTTGCTCAAGATTAGTAATATCAACATGCTTCATTTTAAGCTCTTGCTTGATGACTGTTTTGCCTTTGAGCTTTCTCACCAATTTCAATACTTCGGTTTCAAGATCAGCATTCATGCCTTTAATTTTAGCTTTGCTCAATAGCGTATCGGCGGCATCATGCTCAGAAATTGCTCTTGAAATATCTTGAAAGCTGTACCCTCGCTTAGTGAGATCGTTGGTTATTTTCTCTTTGGTGGTTTGACTAAAATCATCATAACTATCTAAACGACTTTTGATCATATCAAGTTCAGACACTTGTTTTTTCTCCATAATATCAATTAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 67774-69063 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPIB01000014.1 Photobacterium carnosum strain TMW 2.2021 Photobacterium_carnosum_TMW_22021_contig14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 67774 28 100.0 32 ............................ ATTACTAACATTTTTTAATTGAGCGATAACTT 67834 28 100.0 32 ............................ AAACCGATCAACAGAATCAAATAAACGTTGAG 67894 28 100.0 32 ............................ AGAATCAGTAGCAGAAAAAATCATTTTAGTAT 67954 28 100.0 32 ............................ TGATCGTCTTTTTAGATTTTATCGTTCAATAA 68014 28 100.0 32 ............................ TTATGCTGGCTGGTAGCTCCATTTTTCCATAA 68074 28 100.0 32 ............................ CAAACGATCCAGTAAAAGCCCGCACTTTACGA 68134 28 100.0 32 ............................ AGATAAGATTATCGATATGCTCGTATTGCTTG 68194 28 100.0 33 ............................ AACAATGCTTAATTCTTTCAGATAATTATGAAA 68255 28 96.4 32 .........G.................. AAAGGGTCACATAATTATAACTTTACCATTAC 68315 28 100.0 32 ............................ GCTATGAGTCATTCTATAAATACTCATATAAA 68375 28 100.0 32 ............................ AGTACCCGTAGAAGAATAAAGCAAATGAACTT 68435 28 100.0 32 ............................ AAGTAAAGCCCGCACACTCCGACCTGGTGACG 68495 28 100.0 32 ............................ ATCCCAAATTGACCAACAAACAACAAAATCAA 68555 28 100.0 32 ............................ AATGGCACTTTCAAGCGAGGAATCTTTATCAT 68615 28 100.0 32 ............................ ACCTAACGCAACAAAACCAACATGCTCGCGTG 68675 28 100.0 32 ............................ AAACACCGCAATATTCTCCCCCGTCTTCAACA 68735 28 100.0 32 ............................ AGTAATAAAAGTAATCAGCAAAACACCGACAA 68795 28 100.0 32 ............................ ACCAATAGTCCCCTTACCCACTTCCAACCCGT 68855 28 100.0 32 ............................ CAGACCATGTCGTACTGTTCTTGCGAATATCC 68915 28 100.0 32 ............................ GATACGACGAGCCTGATGTATTAGTTCGGGAT 68975 28 96.4 32 .........................C.. CATTCAATGCGATTGGCTTTGAGCTTGTAAAT 69035 28 75.0 0 ...A...A...T..T..T..A...T... | T [69059] ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACACGCGTATTACGGCTATTATCGCTATTCCAAGTGAGATTAAGGGTTATCAAACTGTAAAGCGCGTACAAGCAAAAACTGCGAATAATAAGCGTAAGCGGTCGATAGCTAAAGGTTGGATCAGTGCGGATGAAGCGATTCATGCAATTCCGAACACAGCAGAGCGTAGATTAACCTTGCCTTATGTTCAAATTCAAAGTTTATCTAATCAGAATGTGATGCGAGTATTTATTGAGCACAGCCAAGTTGTGAGTGCTGCAACTGACGGTGTATTTAGTAGCTATGGATTAAGTGCTACCGCAACGATCCCTGTATTTTAAGTGCTGTTTTGATTGTAATAGCAATAATGGGTTAGATGAGTATTCATTTAACCCTTTTTTTTAGCCTTTATTAGTTGCATTTAAAATCAATGACTTATAATCAGAAGATAAAAAAGGGGTAAAAGAGGGTTTTTAGGGTTTTATTTAAATTAAACAATCGCTTATTATAGTTAAGCTTCA # Right flank : ACAGGAAGGGCATAACGATAAATTGAATGGAGGGGTGAAGCGGTTAGATTTACATCAAAAGGTTAACCATAAAGTCCACCATTCGCTGGACTTTATGTTGTTAGTTACATGCTGTTTACTGATTATTCTCATGTTCAAATTCGATCCACGCTTTTTCTAATTCAATGAGACTGGCTGTGATTTTAGCTTTGTCTTGTTTTTGAATGATTAATTGTCGAACGTGCTCTTGCTGTATAAAAATATCCTGACGTTTATTGTCTACAAAGTAATTTCTTAATCCTTTTGCCTGATCCATATACTGATGTCCAATATAAAACGGTGTATATCAAAATAGTACATTTATTGTGGTTATTCTCAAGTGTTTGATAGGCTGAATGGATTTTTTGTGCACTTATTTGCTTATGGCGTATCAACTATGAAACAGGTTATGCCATTATATAAAGTAGAGGGGATATGATAAATTATGTTGAATTTATAGAGTGATAAAGGTTAAAAGAAAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //