Array 1 49355-53343 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXUL010000019.1 Klebsiella pneumoniae strain RHB14-C03 RHB13-C05_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49355 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 49414 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 49475 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 49536 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 49597 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 49658 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 49719 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 49780 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 49841 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 49902 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 49963 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 50024 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 50085 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 50146 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 50207 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 50268 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 50329 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 50390 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 50451 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 50512 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 50573 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 50634 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 50695 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 50756 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 50817 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 50878 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 50939 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 51000 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 51061 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 51122 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 51183 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 51244 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 51305 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 51366 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 51427 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 51488 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 51549 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 51610 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 51671 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 51732 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 51793 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 51854 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 51915 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 51976 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 52037 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 52098 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 52159 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 52220 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 52281 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 52342 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 52403 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 52464 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 52525 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 52586 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 52647 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 52708 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 52769 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 52830 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 52891 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 52952 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 53013 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 53074 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 53135 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 53196 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 53257 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 53315 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 66 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //