Array 1 165884-164407 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHMZ01000005.1 Salmonella enterica subsp. enterica serovar Typhimurium strain RS17 scaffold5_size228448, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 165883 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 165822 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 165760 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 165699 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 165638 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 165577 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 165516 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 165455 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 165394 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 165333 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 165272 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 165211 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 165150 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 165088 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 164985 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 164924 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 164863 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 164802 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 164741 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 164680 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 164619 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 164558 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 164497 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 164436 29 96.6 0 A............................ | A [164409] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 183570-182016 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHMZ01000005.1 Salmonella enterica subsp. enterica serovar Typhimurium strain RS17 scaffold5_size228448, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 183569 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 183508 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 183447 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 183386 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 183325 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 183264 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 183203 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 183142 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 183081 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 183020 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 182959 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 182898 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 182837 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 182776 29 96.6 32 .G........................... CCAGCTTACGCTATTTACGACGTTATTGAGCA 182715 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 182654 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 182593 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 182531 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 182470 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 182409 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 182348 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 182287 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 182226 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 182165 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 182104 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 182043 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //