Array 1 10522-10006 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUIQ01000063.1 Tetragenococcus muriaticus DSM 15685 G577DRAFT_scaffold00061.61_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10521 28 100.0 33 ............................ ATATAATATTTCTGCTGTGCCATTCCCTCCTAG 10460 28 100.0 33 ............................ GAAGAAAATTTTTATAGAGATATGACAAAGAAG 10399 28 100.0 33 ............................ TTCGATTGTTTTAAGACAAATGATTGTCAAGTA 10338 28 100.0 33 ............................ TAAGCGAGAAGATAACATTTATTTAGAAGAAAA 10277 28 100.0 33 ............................ TTTTTGACTTCTTTTTGCATTTTTTTGATGACA 10216 28 100.0 33 ............................ AGATTAGAAAGTAGGGATAACATGGCAAAACGA 10155 28 100.0 33 ............................ ACCCGTCGAAGTAATGAGCGTGCTTTAAATGGG 10094 28 100.0 33 ............................ ATAAAAGTGGGGAATTGAATGCAAGCATGAGTA 10033 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 33 GGATCACCCCCGCTTATGCGGGAAAGAC # Left flank : T # Right flank : AGTTAAAGATCCCTACAAAAACAGCATTTTTAATTCACCATTTTCAAAAATTTATTCACTTTTGTCGATAATTGATATATTATTTTCGCATCTTCCAGAGCTCGGTGAGGTACATAATCATCAAATCCATAACTTACTAAAGCTGTTTTTAATTTATAATCACTGAGAAGCATTTTTTCTCGTTTAATATACCGAATTAAATCATGAGGCTTATTTGATAACTTTATTAAGTCATGATCCTTTAAATATTTATTCAAAAAGCGAAGATCAAAGTCAAGTCCGTAACCAACTATAGGAAAATCTTCTATAAAGTCTACAAACTCCATTAATGAATCCTTTAAAGGTTGACCATTTTCATCTAATAAATCTTGAGTGATACCAGTTAACTTAATAATATCTGTTGGTAATTCCTTATCGTATTTAATTAATCGATGAAAATTTGTTAGTTTTCCTCCATCCAGCTTAACTGCTCCGATTTCAATAATTTGATTATCGTTATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCACCCCCGCTTATGCGGGAAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.90,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 1 1990-5 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUIQ01000011.1 Tetragenococcus muriaticus DSM 15685 G577DRAFT_scaffold00010.10_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1989 28 100.0 33 ............................ AGGGTTTATCCCGCTTGTTTCTGGGAAACCTAA 1928 28 100.0 33 ............................ AAAATATATACTATAAAGTATTGACATTATATA 1867 28 100.0 33 ............................ GGAAACGGTCGATTGATCAATTGCTAACTCATG 1806 28 96.4 33 .......T.................... AGATCTCACCTGAGGGCTATGTACAGTGGGGTG 1745 28 89.3 33 CA.....T.................... AGTCTTTTAACGAAATGGACCCTAATGAAGTTA 1684 28 100.0 33 ............................ GTAAGTAGCAACTTCCCAGTTAATCATGTTGAA 1623 28 100.0 33 ............................ TCTCCAAAGTCATTGATTGCGTCATCGACACTA 1562 28 100.0 33 ............................ TTGATAGTTACAGCCTGCTCCGTGGAAACTGTG 1501 28 100.0 33 ............................ TTTGACTGAATCCCATACGTCGCTACCTATCTG 1440 28 100.0 33 ............................ TTTCATCCATACGCTGCAAACGTAAATCATTGT 1379 28 92.9 33 AA.......................... TTTTAATCCCTTTGCCCATAGTGTTTTCCTCCA 1318 28 100.0 33 ............................ TTTCATCCATACGCTGCAAACGTAAATCATTGT 1257 28 92.9 33 AA.......................... TTTTAATCCCTTTGCCCATAGTGTTTTCCTCCA 1196 28 100.0 33 ............................ TGGTTAGACTCATGCCACTTGCTGCTTCTGTCA 1135 28 100.0 33 ............................ ATTTTGAATATACATTTACAAACAGTCGCTTTA 1074 28 100.0 34 ............................ TTAGCTTTTCAGTTAAATAGTTTTTGTGTATTTG 1012 28 100.0 33 ............................ CAAAAACGATGGAAGATGGTTCGCGCGAATACG 951 28 100.0 33 ............................ GGCACGGCAATTGTCTATAGCGCCATAAGTACA 890 28 100.0 33 ............................ TCAGGCCTATTTTTCGGACATTGTGAAAAATCG 829 28 100.0 34 ............................ TTACTCTACGACTTCCCGGAGCAACCTCTTCATA 767 28 100.0 33 ............................ GTTTTGATTGTGAATACTTTGGGGCTAGGGATA 706 28 100.0 34 ............................ GTACTGCCCCTGAGCCTGATCCTGATAGTAACGA 644 28 100.0 33 ............................ TCAGCCACGTCTGGCAATGTTTATAACTCTTTA 583 28 100.0 33 ............................ GCATATCTAAAAAAGCATCGCTATCTATAATTG 522 28 100.0 33 ............................ TTGGTAAGCATCGACAGGCACGCCCTTGCCATA 461 28 100.0 33 ............................ TCATAAGATATGACATTAAAATTAGGAGACGAG 400 28 100.0 33 ............................ TATGAGGACGAATTGGAAGATGAGTTTCCGTTA 339 28 100.0 33 ............................ GAAAACATCGTACAAGCAACAGCTCGGGATGTA 278 28 100.0 34 ............................ TTGGTGGGCGTTTTGTGCTAGTCCTAGTTGATAG 216 28 100.0 33 ............................ GTCTTTCTTGAAAATTTTCTTTTACTTTTACCA 155 28 100.0 34 ............................ TGAATTCTTTTTTTAGCTCCTATAAAAGGAAGCA 93 28 100.0 33 ............................ GTAATGAAAAACCAATTGGCTTAAACCGTGATA 32 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 33 28 99.1 33 GGATCACCCCCGCTTATGCGGGAAAGAC # Left flank : GTTACGTACAACAAATTCTTTGGAACGCTTAAATCGGGAAATCCGACGTCGGGAAAAAGTCGTTTCGATCTTTCCCAACGTCGTTTCCGCTGAACGTTTGATTGGCGCCGTTTTAATGGATATACAAGAAGAATGGCAACAAATGCCCAAACCTTTTTTCCAAGGTCCTGTCTTAGAAGAAGAGTTCCCTTTCTCTACGGATTGATCTTTAAAGAAAACGAAGAACGATTTGACAATGAATGAAGGCATGGTATTCGCGGTAAGCGAAATGGGCGCCTGTTCTTAGGTTGAAGAACCGAAGAAGCCGCCCAAGATCACCATGCCTGAATAGATTCGTTGTCAAACCCGTCGGCTACCTGATCTTATTCGTCGTTTCTAGAAAAATTTAAACCATAAATAAAAAGAATCCTTATCAAATGATTAGAAAATCGTTCAACAGACAAAGCGTAAATGACATTGATATTTTTACACAAGATTTTGGGCTTGACCGCGAAAGACTA # Right flank : CTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCACCCCCGCTTATGCGGGAAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.90,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA //