Array 1 44-439 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAHY01000515.1 Escherichia coli strain KCJK1866 NODE_626_length_504_cov_1.87082_ID_1253, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 106 29 100.0 32 ............................. TATGCCTCTTTTAAACGCGCCGCCTTTTTGCC 167 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 228 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 289 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 350 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 411 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGGATAAACCGAATTAAAATCCCCGTTTCTGTTACATGGGCGAG # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 97014-95277 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAHY01000256.1 Escherichia coli strain KCJK1866 NODE_8_length_176643_cov_21.0102_ID_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 97013 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 96952 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 96891 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 96830 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 96769 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 96708 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 96647 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 96586 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 96525 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 96464 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 96403 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 96342 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 96281 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 96220 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 96159 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 96098 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 96037 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 95976 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 95915 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 95854 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 95793 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 95732 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 95671 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 95610 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 95549 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 95488 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 95427 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 95366 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 95305 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 29 29 98.4 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 123657-122713 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAHY01000256.1 Escherichia coli strain KCJK1866 NODE_8_length_176643_cov_21.0102_ID_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 123656 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 123595 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 123534 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 123473 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 123412 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 123351 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 123290 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 123229 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 123168 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 123107 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 123046 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 122985 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 122924 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 122863 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 122802 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 122741 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //