Array 1 198871-199439 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_OBEG01000003.1 Nocardia amikacinitolerans strain DSM 45537, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                                                                      	Insertion/Deletion
==========	======	======	======	============================	=====================================================================================	==================
    198871	    28	 100.0	    33	............................	CAGTTCGGCTACGACCCGGAAGAGGTCGAGATC                                                    	
    198932	    28	 100.0	    33	............................	CCTCGACGACGCCGAAGAGCTCGACGAGCAACG                                                    	
    198993	    28	 100.0	    33	............................	CGACACCGGAATTACCGTGACATCGTTGTCTTC                                                    	
    199054	    28	 100.0	    33	............................	CGATCAACGATCCGGACACCAACTCACGAAGCA                                                    	
    199115	    28	  96.4	    33	..............C.............	TTGGCCGCCACCGCGCAGGAGGCGATCACCCAG                                                    	
    199176	    28	  92.9	    33	.......G.................A..	CAAGGTGCGCGGCGCGGGCGCCGACAAGGACGA                                                    	
    199237	    28	  92.9	    33	..........T.............G...	CGCCAGTGTCCACGCCAGCAGCCGCTTGTAGTC                                                    	
    199298	    28	  92.9	    85	..............C.....A.......	CGGGAACGGGCAAGGCGCTGTCGTCGAGGGCGAGCTCTTCGCGCGCATGGGTCATCGGAATCGTTGGAATCCACGAACTTCGCTC	T [199325]
    199412	    27	  78.6	     0	..........-..G.........CGT.T	|                                                                                    	T [199425]
==========	======	======	======	============================	=====================================================================================	==================
         9	    28	  94.9	    40	GTGCTCCCCGCGCATGCGGGGATGAGCC	                                                                                     	       

# Left flank :   GCCTTACAGGTGCGACTTCGGTGAGTTTCGGTGGCACACCGGCGACCTCGTTCACGGTCGACTCCGCCACCCAGATCACCGCCGTCGCCCCGGCGCGGGCGGCGGGGACGGTGCAGATCACTGCCACGACAGCGGGCGGCACCAGTAACGGTATCGCCTTCACCTACGTCTGACAGTGAATGCGGCGGGGCCGCCGGTAGGCCATTGCCTGCCGGCGGCTCCGTTGCATGGCGATCGAACCGAAGCCCGCCGCCATCATGGATGGTGTTGCAGGGTGGGTGGTTTCGCACGCTCCGTGCTCGAGATCGGTACGTCTTGGTACTGCAACGACACCTGACCACAACCACGCTTCACCGTGCGGGACACCAGCGGTAATCGCCAGGAGAATCGATGTCGCGTTCGGTGTGGGGTTGATACGGTCAGGGGCTCCTGCCCGCGACGCACGGATGAAAGTGAATGAGAATGGTATCAATGGCCTGTAAAGACGCAGGTCAGGAAGT
# Right flank :  TGAATCTGTGCGCGAGAGGGGACTTGAACCCCTACGTCCGTGGACACCAGAACCTAAATCTGGCGCGTCTGCCAATTTCGCCACTCGCGCTTGATGGTACGACCGTCCAAACTCTACCGGGCTTGACCGTGATCGCGAAGCAACTGTGGCGAGTGTCGTACTGGCCGGTAACACGACCAGGGACTATAACGATTCGGTAACGGTCAACATGAGGGGCACTCATGTTTCATACGTGTTGGTAACCGGGTGGACCAGCGCGTTCAAACATGAGGACGGGTCATGTTTTTCATCATTCTGGTACGGACGTACGCAAATACTCGGGGGTAAGGGGTCGGCGGCGGGCCAAACGTGAGGATTTCCTCATGATTTTGTGCCATCCTCGCCCGTATCAGGCCTAGAGGTCGAGGACGACCCGCGCACCTATAGGAAGCGGCGTGTCGACAACGGGCATGTCGCCAGGAGAAGGAAGTCGAAGCGTCTTGACGATCAACGAGAGCACC

# Questionable array : NO	 Score: 6.09
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGCTCCCCGCGCATGCGGGGATGAGCC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [3,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-12.70,-12.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-9] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [53.3-31.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.55,0.37   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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