Array 1 1187955-1190859 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075905.1 Clostridium perfringens strain CPN 17a chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1187955 29 100.0 37 ............................. TTGTTGCTTCTGGAAAATATCTTTCTATCAAGTGTTT 1188021 29 100.0 36 ............................. AACAATAAAAACATCATCTGCTGTAATCTGCTTTCC 1188086 29 100.0 36 ............................. GAGTAGTTATTCCATATATTTTATGCTTTATAGTAG 1188151 29 100.0 36 ............................. TACATTCAACTAAATCTATGTTATCATTAAGCGGTT 1188216 29 100.0 36 ............................. CTTATAGCATTTTCAAAACTAACATAAGTTTTTTCT 1188281 29 100.0 36 ............................. TCTAAAATTACAAATTTATAAGTGTCATCATATATA 1188346 29 100.0 36 ............................. GTTGTAAAATCAAATTCTCTTTCAAAGATATCTCCT 1188411 29 100.0 36 ............................. TAGATGCAGCTTTAAAAAACGTCATAAAAATGATAA 1188476 29 100.0 36 ............................. CTATTTTGCTAGCGTGTTCAGTTAAACCATTTCTAA 1188541 29 100.0 37 ............................. TTTATAACATCCATTACATCAACATCACCTATTATGG 1188607 29 100.0 36 ............................. TTATATGCCTCACGGTGGAGAATGTGCATATAATTG 1188672 29 100.0 36 ............................. GTGAAAACAGTAGGTAAAAATTTATTAGATCCATCA 1188737 29 100.0 37 ............................. CTATTTTGCTAGCGTGTTCAGTTAAACCATTTCTAAC 1188803 29 100.0 37 ............................. TAAGTAAAATTATTCTCTTAAAAGCTTTATCTGGATT 1188869 29 100.0 36 ............................. GTTCTATACATAGGACTAGCTTTTTGGTTAGGCTGA 1188934 29 100.0 36 ............................. TTCTTCAACTTCAAAATCACAAAAATCTTTATAATC 1188999 29 100.0 37 ............................. CACTAATAGTAGAGGCAAAAAATATTAATGTAAAAAG 1189065 29 100.0 36 ............................. TATCAAATATATTACCTAGTGCATTCCCTATTTCTC 1189130 29 100.0 36 ............................. CTTTTTTAATTGATACTCTTAGTATGTGTATTTTTA 1189195 29 100.0 36 ............................. TGGAGGAACACAGAAAGCATGGTTCTTAACAGAAGA 1189260 29 100.0 36 ............................. AAATACTCAGCAAATGCCTCGGCAAATGCTTCTGTA 1189325 29 100.0 36 ............................. TGAAAGAAGGAAAATATTACTTAGTAAAAGGCCTTC 1189390 29 100.0 36 ............................. CTTCCGCCTTAGCTCTCGCTTTCTCTGCTGTTACTC 1189455 29 100.0 36 ............................. ATAACATCTATAACTAAAAAGTATAAAGTAAAATAT 1189520 29 100.0 36 ............................. ATGGCACTTTAGTAAATCCCCATTGGAAATTACTTA 1189585 29 100.0 36 ............................. TTTTCTGTTTCTATCCTAACGAATCTATCTGTTATA 1189650 29 100.0 37 ............................. TTAATTATCATATCAACTGTCATACCCTCAACAGAAT 1189716 29 100.0 37 ............................. TAACCATGATACTGAGTAAAACTAGGAAAAGTATAAG 1189782 29 100.0 36 ............................. TTGATTAAATCAGCTCTATATTTAAAAGCATTGTCA 1189847 29 100.0 36 ............................. AATATAGTCCCCATAATTCCAAGTCCAACAGGTAAA 1189912 29 100.0 36 ............................. ACCAAAGGATTAGCTTTCACTTTTCTAGGAATAAAA 1189977 29 100.0 36 ............................. AATTGACTATTACCTACACTAGGCATCTGATTATCA 1190042 29 100.0 37 ............................. TCTTACTTATTTAAAACTTTAGAAAATCTAATAAATG 1190108 29 100.0 37 ............................. CTTTTAAGGTTACGGTTATTCTTAAAAGTTCTAATTT 1190174 29 100.0 36 ............................. TGGATATGGATGGAATTAAGATTAAGGTTAAAGCAG 1190239 29 100.0 36 ............................. TTCGCAAAAATTGACGATACTTTACAAGGTAGACCA 1190304 29 100.0 36 ............................. TATAATGACTTCCAATTAGAGGAAGGAACTCAATCA 1190369 29 100.0 37 ............................. ATTTATTAAAGATACTTTCTTTGGTGCAGTTAATAAG 1190435 29 100.0 38 ............................. TTTTTAGATGCATAGTTTAAAGTATCATATTCTAGGTC 1190502 29 100.0 36 ............................. AAAAGGTGGTAAAATACCACCTAAAAAGCTATTATT 1190567 29 100.0 36 ............................. ATAACGTAAAGAGCAGCTACTAAAATTAATAACTGT 1190632 29 100.0 37 ............................. AAGAAGAACAAAAGAGAATTAAACAGGCTCAAGATAA 1190698 29 100.0 37 ............................. TATCTCGAACATAATTCACCTAATGGCAAACCCACTT 1190764 29 100.0 37 ............................. TTGCTTTTTAAGACACATTCTAAATATGTGCCTTCAT 1190830 29 86.2 0 .................GAA....C.... | C [1190857] ========== ====== ====== ====== ============================= ====================================== ================== 45 29 99.7 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTGAAATTTGGG # Right flank : TATATAAAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATGAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGGTTGTCATATTTAATAGTTCCAATATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATGAGTAATTTAAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGCTATCTGTCCATTTTTACTTAATTATTAATATATACTTATTAAATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCCTCGAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 1436978-1437334 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075905.1 Clostridium perfringens strain CPN 17a chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1436978 30 100.0 35 .............................. ATTGAAAGTAGATATGGTTGCAAAATTAGATGTAT 1437043 30 100.0 35 .............................. AGAACACAAAAAGTAAAAGGTAAATTCTCATGTTC 1437108 30 100.0 36 .............................. GAGGGCTTGTAAGAGTAGTATTCTATCCGTTATCTA 1437174 30 100.0 36 .............................. AGAAGAAAGAGCCAAAGCATTATGAGATTTCTAAAA 1437240 30 100.0 36 .............................. TGCATAAGTTAATAGGCGTAAATTAGGATTTTATAA 1437306 29 90.0 0 .........G.......A.....-...... | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 98.3 36 GTTGAATATCAACAAGAGTTGTATTTAAAT # Left flank : AAATTTTAGTCAGATTTATTAGAAATTTATTGTGTTTTAAGTTATACTATAGATAGTACAAGGTTTAGTGGAGTGGAGAAAAAACGATATGTTTGAAGTAATTATGACTAGCATATCCACTCTATGTACTGTAGTAACTACAGTAATTGTAGTTATGCAGTATAAAGATAAAAAATAACCAAGAAAAGAACCATATAAAGTGGTTCTTTTTTGTTTGAACAAAGTGTAATAAATTGAATATTGGATTTATATTGAAAAAATATACATAATATGGTAAAATGATTCAAGAAATAAAGGTTGATTTACCAACCTAAAAGTGAGAAAGTGATGTTTAAATGTCATGGTTTCAATGTTTGGTAACATAATACTCTCACTAAACGCTCCAATGTATTATTATTGGTAAAAAGCTAGTGCAAAATAGATATAAAACTAGGCGTGTACTAGGATACAACTTAATATTTTAGTAAAAGTATAGAATGTGAAATGTCAATTTTATTAGT # Right flank : TCAAATAAATTTTCATATATAAATTGGACTCTATGTCAGTTAATAGAAATCTAGGAGGATATAGATTGACTACAAAATGTATAAAATTAGCAATTGAATTTAGTAAAGAAAACTGTGTAGATAAAAAAATTTTTTTTGACAATATAAAAGATATACAATATAAAACTTGGAAAGCTAGTAATAGGGCTATAACATATTTGTACTCAAATGATATGCAAAACTTAATTCAAAAAGATGTTGGCTTGCCTAAACAAGAAGATAAAGATATATTCGGGAAAAGTTTTGGTGCTTGGATAGAAAATAAAATGAATGAAATTATAGATGGAGCCAATAGTAGGAATGTGGCTCAACAAAGAGCTTTTGTTATTAATAGATATAATCAAGATAAGAAAAATGGATTATTAGAAGGAAAAGTAACACTAACTCAGTTTAAAAGAAATATCCCTATTATAATTCACAACAAGTCATATAAAATTATTGAAACTAATAAGGGGTTAGGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAATATCAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //