Array 1 3437-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAFF01000018.1 Atlantibacter hermannii NBRC 105704, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 3436 29 100.0 32 ............................. TTTTAAAACAGGATGTGGCCCGCCTGGTGCTG 3375 29 100.0 32 ............................. CAGTGCGGACTGCTGATCGCTTAGTTGATCTG 3314 29 100.0 32 ............................. GAAATGTGGACCAGCGGAAAAAATATCTACTT 3253 29 100.0 33 ............................. AGGTCGGGCATAGTTATTACGACCCGTCCAGCC 3191 29 96.6 32 ............................A TTTATGATCGGTGATATCACGGCCTGGCGAGC 3130 29 100.0 32 ............................. TTTTTGCTGATGCTGATGATATTGAGGCCCAC 3069 29 100.0 32 ............................. AGGCAACTATGGAGCTACACGGCGTTAAAACG 3008 29 100.0 32 ............................. TTGATTTAGAGCAACTTTTGTATCTGCCAATG 2947 29 100.0 32 ............................. GCAACCCGTGGCGTCGTCCATATTCATGAACA 2886 29 100.0 32 ............................. GCGAATATTCAGGTTAATGCGCTGCCGTTTCG 2825 29 100.0 32 ............................. GTAAATATCATGGCTGAGAAATTATTCGGCAC 2764 29 100.0 32 ............................. GTTTTTACACGTCCAGCGACGCACACGCACAA 2703 29 100.0 32 ............................. TGACCGATTCGGCAGGGACAATGAAGCAGGGC 2642 29 100.0 32 ............................. GTGACACGTCAACCGGTGTCACCTAGCACAGT 2581 29 100.0 32 ............................. ACGGAAATATTAGACCCGTGGCGATTAGCTGA 2520 29 100.0 32 ............................. GATCGGAATATAGTCAGTGCCATCCTCCGTGG 2459 29 100.0 32 ............................. CCCCGGTCACGGAACCGTCACTGGCTGCGGCG 2398 29 100.0 32 ............................. TTTTAACGGGTTTTATTGACCAGACTCCTATC 2337 29 100.0 32 ............................. CGCTCGCACTCTATTGGCGTAAGGCGACGCAC 2276 29 100.0 32 ............................. CAATTGATTACAAAATCGGGATAGGCGGCATG 2215 29 100.0 32 ............................. GTGGGCCCGTTTGTTTTGGGGGCTTCCGATAG 2154 29 100.0 50 ............................. ACCCGTATTAGCCGCGTAGTTAGCGCGTACAGCGTGTTCCCCGCGCCAGC 2075 29 100.0 32 ............................. ATGCTGACGGTAACGTTATTGACGATCAGGTA 2014 29 100.0 32 ............................. GGCCGCGCCGCGAATATCGAGATGCATAAACG 1953 29 100.0 32 ............................. ATAAATTTGGCCCCGGAAAAAATGGATTTCGC 1892 29 100.0 32 ............................. CCACATTAAAAAATAAATCCACCGGCGTTTAA 1831 29 100.0 32 ............................. CAATTCTTCGAGTTTCGCCAGTTTGTTGGCGC 1770 29 100.0 32 ............................. ATCCGTATTGCATATGGATGTCGGACTTCGCC 1709 29 100.0 32 ............................. GCGACGACTAAAAACGGGGTGGCAGGGTGACA 1648 29 100.0 32 ............................. CCTTTTCCCACGGCCATGTTTTCGGCACTGGA 1587 29 100.0 32 ............................. AACCCGTTTGATGGCATCGACTTTCTGAAGAA 1526 29 100.0 32 ............................. GCTATCGACATTAATGCCCAGCGCTTTTGCAT 1465 29 100.0 32 ............................. CGCTTTCCTCCCTGCATAAATTGCAGGTAACA 1404 29 100.0 32 ............................. CCATTACTTCGCGGTACTCAGAAAATAATTAA 1343 29 100.0 32 ............................. TTCAGGAATGATTTTTTTCCACCGCGTGACGG 1282 29 100.0 32 ............................. AAAAAATAAATCTTTTTATATCAATAAATTAA 1221 29 100.0 32 ............................. AAGAACACCAGGCGCGCAAGGATGGCTCGTAC 1160 29 96.6 32 ............................A ACAGTTGATCCCTCCTGACGAGGTCCAGCCCC 1099 29 100.0 32 ............................. GCAATGCAGCAGTCATGATGCTGCCCCGAGTC 1038 29 100.0 32 ............................. GAGACTACAATGCCGCGCTTATCAGATATCCG 977 29 100.0 33 ............................. GTCGATATGCTTCGCCGGGTCGTAAGCATTCGC 915 29 100.0 32 ............................. CGCTTCATCGCCATGTAATTAACGCGACGAAT 854 29 100.0 32 ............................. CGTTAGCGTTTGATACTCCCAACTGTACCCAG 793 29 100.0 32 ............................. CCAGGCACCATTGCAGCGATTGAGTAGAGTTT 732 29 100.0 32 ............................. AGATCAGGGAGCTATCCGGGCAGAGCGGCCAG 671 29 100.0 32 ............................. CTCAGAACTGCGCAGGCCGGTATTGAAAGCGA 610 29 100.0 32 ............................. CGCCAAAATGCCACATTTGCGGGGCTGAAATG 549 29 100.0 32 ............................. CAACTCCTTGTAATCGACGACATGAGCGCCGA 488 29 100.0 32 ............................. TAATAGACGCACTTTCAAAGCCTGGCTGGGCC 427 29 100.0 32 ............................. CTGATGCGCGAAACGTTCAAAGAGGCTAAATC 366 29 100.0 32 ............................. TTCGTTGATATGCTGGCGGATAATTACGCCGC 305 29 100.0 32 ............................. ACTCCCCGGTGTTGCTGGACCACGTTGCAATT 244 29 100.0 32 ............................. ATTCCCAGCCAAACTTTTTCGCGTACGCTTCC 183 29 100.0 32 ............................. TCTTCATTACTTGAGGCTTCACACGCTTTGGA 122 29 100.0 32 ............................. TTGCGATGCTTACAAATGGCGCGTGTGTCGTG 61 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================================== ================== 56 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCTGATAGAGGATGTCTTAGCTGCAGGTGAGATCGCGCCACCTGAACCACCGCCCGATGCACAACCCGTGGCAATTCCACTTCCAGTGTCGCTCGGCGACGCAGGGCACCGGAGCGCATGATATGAGCATGCTGGTGGTTGTAACAGAAAACGTACCGCCACGGCTGAGAGGTCGTATGGCGATATGGTTACTGGAAGTTAGGGCAGGGGTCTATGTGGGTGATGTTTCTACGCGTATCCGGGAAATGATATGGCAGCAGATAACATCACTGGCCGATGAGGGAAATGTTGTTATGGCTTGGGCAACTAATACTGAATCAGGCTTTGAATTTCAAACCTGGGGAAAAAATCGACGTGTTCCGGTAGATTTCGACGGGCTGCGTTTAGTCACGTTTCTGCCCGTTAATAATCAATAAGTTAGCGTTCTTTAAAAAAATGGAAAAGTTGGTGGTTTTTTTAATGGCAAAAAAATCTATATAATACAGATGTATAGCTTTAGA # Right flank : GGCTTTCCCGACCGCTGGCAAACTGAAACGAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21082-19029 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAFF01000029.1 Atlantibacter hermannii NBRC 105704, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 21081 29 100.0 32 ............................. GCGGCGACATTCTCATGGTCGGTAACGACAAA 21020 29 100.0 33 ............................. CGCCGCGTCTACACCTTCAGCAATCTGGCCACC 20958 29 100.0 32 ............................. CATTCGAGTACATCGCCGGCGCTAACTCATCC 20897 29 100.0 32 ............................. CGGCTGTGTCCGTCACGCCCCTGACTTTTAGG 20836 29 100.0 32 ............................. CCGTGCCGATTTCGATTAACTGATCTTTGTTC 20775 29 100.0 32 ............................. CGCTGCAAAACAATGAGGGAATCTGGAGAGGG 20714 29 100.0 32 ............................. ATGCGCTCTACAACTGACATGCCCCATCCATT 20653 29 100.0 32 ............................. TTCAGGCGCACGGCTCCCGATTAGAACAGCTA 20592 29 100.0 42 ............................. CGCAAAAATTCGTATGCCGTGCATACCGGCTGTGCCGATGAG 20521 29 100.0 32 ............................. CCAATATTCTCGAATTTAATGGCGTATGAAAC 20460 29 100.0 32 ............................. ATGGATAGGCATAGCCAGCACCGATTTTAACT 20399 29 100.0 32 ............................. TTTGGCTGGGAATCTTCGCTGACAGAGATTAT 20338 29 100.0 32 ............................. TTTTTCCGGGGAACGCGCTGACCGGCAGCAGC 20277 29 100.0 32 ............................. CAAACCGGGAATTTTCACCCAACGCAAAAGCC 20216 29 100.0 32 ............................. GGCTTTCTGGTTTTACCGGGGCCCTGCCTAAC 20155 29 100.0 32 ............................. CTCAGCATCTGGCGTTTTCTTCATGGGTAAAC 20094 29 100.0 32 ............................. GACTCCAAAGAGTTTGCCGGCCACATTAAAGA 20033 29 100.0 32 ............................. ATACCCTTGCCCGGTTGATGCGTCGGTGAATA 19972 29 100.0 32 ............................. GCAGAAGACGGCCATCGGACAGCGCCGCCGTC 19911 29 100.0 32 ............................. CCTATTGAACGCGCGTTCGGCGTGGGTGGACT 19850 29 100.0 32 ............................. CGCTGACGTTTTAATGCTCGTCCACCCATCTT 19789 29 100.0 32 ............................. ACGTCGCCACTTCGCGCCGTATGGGTTTGGTA 19728 29 100.0 32 ............................. CGGCGCGGCTTATACAGCAGGAGCTACAGAAA 19667 29 100.0 32 ............................. TGATAACGCTTAGAAAGGCCGGAATAACCATA 19606 29 100.0 32 ............................. CGATTAAATGTCCAGCTTGTCCCTGGTTGTCG 19545 29 100.0 32 ............................. CAATCGGCATTGTGCAAAGTGACAGAATCAGT 19484 29 100.0 32 ............................. TCAGAGTTTGATCGGGCGCAAGCCGCCGCCAA 19423 29 100.0 32 ............................. CTCCTGCTCTTTCTCGGATTGCTCATCGACCC 19362 29 96.6 32 A............................ CCCTATCGTTTTGCCGGTGCGTGCTGGCCCAA 19301 29 100.0 32 ............................. CTCCGGGTAGGCGATCATCCGTATCTTGCCTG 19240 29 100.0 32 ............................. TCATAATGGCTGAAGGGGATTGCGAGCCGTGT 19179 29 100.0 32 ............................. AAATCATGTGCCGCGCCGTTGGCGACACATCC 19118 29 100.0 32 ............................. AAGGGACGCCGCTGGCTGGTGGATGAATCCGC 19057 29 93.1 0 ..............C.....A........ | ========== ====== ====== ====== ============================= ========================================== ================== 34 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCGGAGACAATCTCGTCCGGCAGTTGCGCG # Right flank : AACATCTCAAGCCGCCCCCACATCCCCCAGCCATCACACCCTTTGTTTCTTACTCGCACCCGGTATAAACTTCTAAAACCTTCCATCTAAAGGAAGGTTGCGGAGGTAATATGAATATAAGTGATGTCGCGAAAAAAACCGGGTTAACCAGTAAGGCGATTCGTTTTTATGAAGAGAAAGGGCTGGTGACGCCGCCGCTGCGCAGTGAAAACGGTTATCGCAGTTACACGCAAAGCCACCTTGATGAGTTAACGCTGCTGCGCCAGGCGCGCCAGGTGGGGTTTAATCTCGAAGAGTGCAAAGAGCTGGTCCATCTGTTTAACGATCCCGATCGCCGAAGTGCCGATGTAAAAGCGCGTACGCTGCAAAAAGTGGCGGAGATCGAACGGCATATCGTAGAGCTTAACGACATGCGCGCACAGCTGCTGGCGCTCGCGGAATCGTGCCCGGGTGATGACGGCGCCGACTGTCCTATCATGGATAACCTGTCCGGCTGCTGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //