Array 1 115947-116453 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLAA01000035.1 Rodentibacter heylii strain 1998236014 contig_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 115947 28 100.0 32 ............................ TGTCAGATTTTACGTAGCGTATCTTGACAAAA 116007 28 96.4 33 ...................A........ CAAAAATGAAATTTGCAGACTGCCTATGTTATA 116068 28 100.0 32 ............................ TCTATGAAGAAATGGAAAATCAGACAGGACAA 116128 28 100.0 32 ............................ GTCTTTAACAGCACGCTGGAAAGCAATTATAG 116188 28 100.0 32 ............................ AATCCACCATTTGTAAAAAGGGATTATTGCCC 116248 28 100.0 32 ............................ ATCTCGGCAAATTCGGGGGCGATTTGGTCGAA 116308 28 100.0 32 ............................ TCGCTTAAGTAAAATGCTTCAGACAATAACGC 116368 28 92.9 30 .......A.........T.......... TACAAGGATTTATCGAAAGAAGATTTGTTG 116426 28 71.4 0 GAC.T.....A.....AT..T....... | ========== ====== ====== ====== ============================ ================================= ================== 9 28 95.6 32 CCTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AACACTGCGAAAAACTTATTTAGAAGGAAGCAATAACTTTAGCTTTCCCAATATAGGGAACAGAATAGTTCATTACATTACTAAATTTATCAAAATTAATTTTAGTGCCATAGGCATAAAAGAACACTACATTTTTAGGCATTGATGTGTTGAACTAACACTTTCTCGATAATAGGTAATAGTGCCACTGTATTAAATATCAACATAACAGAAGCAATTAATAATATCCCATAAACAAATCCATAGCGGAATTTTTATTATTAAATTAAGCTATCATTACTATGCTGGAGCCTTAATAGATATAACTGAGTCCAATAATATAGCTTAGTCTCTTTAATTTTAAACTAGAATCCTCTTCTCCTTCTTATACGACCCTCTTATTTCAAGTTAAAAATTCCCATTTAAAAACAACATGTTATAAAACGTTTGTAAAAAAGGGTATTTAACTCCAAAATATCTTAACCTCTTGGAATATCAACTATTTTCAAATAAAATACCTA # Right flank : AAATCATAACAACTATTTCTATAGTACTATCAATTTCTTCAGGTATTTTCTGAAAAATATTTTAATTCTCCTATCTATAAAGTTTTTGGAAAATTAGTTCACCACACATTACAGTGCATTGGAGATTACAGAGTTTTTTATGTAAAATATTAACATTTAATTGCATAAGGATTTTCGAATGAAAAAACACCACGTTGACGTACTTATTTCAGAAAATGAAGTCCGTACTCGTATTCAACAACTCGCTATAGAAATCACTCATTTCTATAAGCAGAAACAAACGAATAAACTAATTGTTGTCGGGCTATTACGCGGTTCTTTTATGTTTATGGCGGATTTAGTTCGTGAAATTAAATTACCAGTAGAAATTGAATTTATGACAACAGCTAGCTATGGAAGCGGTATGACAACGAATCATGATGTCAAAATTACCAAAGATTTGGATGGTGATATTAAAGGGGAAGATGTATTAATCGTGGAAGACATTATTGATACCGGAT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 32713-31685 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLAA01000004.1 Rodentibacter heylii strain 1998236014 contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 32712 32 100.0 34 ................................ ATGCCTTGAGTTTTTACATTTGATTTTTTATCAT 32646 32 100.0 34 ................................ GGAATGGTGTTTTAACGCTATCAAAGGCACCGAG 32580 32 100.0 34 ................................ AAACCAAACCAGTGTAAATGTAGGTTGATTCCAA 32514 32 100.0 34 ................................ TTTGTCATATTTAGCTTGTTCATAAATTGTTTTA 32448 32 100.0 34 ................................ CGCAAAGTATTACCGAGCGGGAATTTTTGCGAAT 32382 32 100.0 35 ................................ TTTGAAGGGGATACCCATAGCATTGAGTTGCTCAA 32315 32 100.0 36 ................................ TAATCTTGATCTATGGGGAAATGCCTATTGCCGAAT 32247 32 100.0 34 ................................ TCCTATATGGCTCTCTAGCATAACCATAGCTCGA 32181 32 100.0 34 ................................ CATCAATTTGATAAACTGTTTTTGTGGAGTAGAG 32115 32 100.0 34 ................................ ATTTCTGACAAGAGAAGTACCTTATCAGAAATAA 32049 32 100.0 34 ................................ CCACAATGGTTAAACCTCAATGACGTCAACCACA 31983 32 100.0 35 ................................ CGCTAAAACCACGTCAAATTGATATGTTGATGAAA 31916 32 100.0 34 ................................ CTAAGTAAAGAGCCGTATTTCTTACGAGAATTGA 31850 32 100.0 35 ................................ TCTGCAAGCGATTTTAAATGTTCGAATGCTTTTTC 31783 32 100.0 35 ................................ CAAAAAAAACTTTTGCTGTAAACTGAATGAAATCC 31716 32 84.4 0 ...................GA........TGA | ========== ====== ====== ====== ================================ ==================================== ================== 16 32 99.0 34 GCAGCTGCCTACGCGCAGCTGTGTGTTGAAAC # Left flank : TAAGGAGTAAGCATCGATGCTAATGTTGATTACCTATGATATATCTTCTTCTACAGAAGGCGCTGAGCGTCGCTTACGAAAAATTGCCAAACATTGTTTGGACTATGGCGTTAGGGCTCAATATTCTGTCTTTGAATGTGATGTTACACCTGATCAATGGGTAGTATTAAAAGATAAATTGTTAAAGACCTATGATCCCGATTGCGATAGTTTACGCTTCTATCATTTAGGTAGTAAATGGCGAAATAAAGTCGAACATCATGGTGTGAAGCCTGCAGTAGATATATTCAAGGATATTTTGATTTTGTGAATCGCTAACCTATAGTTCTCATAAAAAAGCTGCTAGGTTAGCGATGGTAAAAAAAACTTTAATAATTAGGATATTATAAAAATACGGTATAGCAATAATTTCTATGATACACTGTCTCCACTTCTTATGTCAGAGGTTAGCGAATCATGCTGGTTAAAGCTTGATAGCGTAAGGCTTTAAAACATAGGGA # Right flank : AGTTGCTCTTGCGATGATTGTCATAGTCTTGAATAAGGGTTGCTCACGATAAGTTGTGTGTTTATGCCATAATACGGTAAATTCTAAAGTGCGGTTGAAATTGACCGCACTTTTATATTATGTACCGCTATGTATTAGATAAAAATTTATGAATTTTTTGTTTCAACAGATTCTTTCTCTAATCCCAGAGTGATTGCTAATGTTTGAACTAATGTCATTGTTGAGCATTGGGAGCGGAAGCCTAGTACTTGCGCTTCTTTAATAATAAAAGAAATATCACTGAATGTGAGTAACGGACTGATTTGGCTGTCGGTAATGGCAATTTGTTTGATGCCTTTCTGTGCTGCGATGTTGGCAATATTAAGAGTTTCATCTGCATAAGGAGAGAAGCTAATCACTACAATAACATCTCCTTCTCGTATTTGGCTTAGTTGTTCATCGAACATTCCGCCTAATCCGTCAATCACGAAGGATCGGCAGTCTAAATGCTGTAGTGCATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCTGCCTACGCGCAGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 20485-21877 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLAA01000026.1 Rodentibacter heylii strain 1998236014 contig_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================================================================================================ ================== 20485 28 100.0 32 ............................ GCGTTGGTCAATGACGAACGTTTAGTGAGTTT 20545 28 100.0 32 ............................ AAATTATGGATAGGGCGCGTCCTATGTTTGAA 20605 28 100.0 32 ............................ TTTTTTACTGTAGCGGATATGTGGCACTTGAA 20665 28 100.0 32 ............................ TTACTGGTATTTGCACCGTCGCCTTGCTCTTG 20725 28 100.0 32 ............................ TTAAATGTTCATTTCGAAATACCTTAATAAAT 20785 28 100.0 32 ............................ ATAAATACCGGGAGCAGTAACGCTGTTTAAAT 20845 28 100.0 32 ............................ CTTTTCTTTGCAGTGATCTTTTAATGCTTTAC 20905 28 100.0 32 ............................ GCACTCGGGGCAACTGGACTCTGCTAACGGAT 20965 28 100.0 32 ............................ TATCAGTGGTTTGTCGATAACGGTATCAATAT 21025 28 100.0 32 ............................ ATACCCGGTACTTACGGGCAGGAAAAGAACGT 21085 28 96.4 32 ................A........... ATTCGCGCGGATTGACTAAAATCATCACCGAT 21145 28 96.4 32 ..........A................. AATATGGATTTTAGCGATCAAACTTTTTCGAT 21205 28 100.0 32 ............................ CTCTAAATCACTTGTGCTGACTTTGTGGGTAT 21265 28 100.0 32 ............................ TACTGGAGCTATAGGTAAGCCGCTATCTTTGA 21325 28 100.0 33 ............................ CTTGTGATTTGGTGTATTTGGCGACGATGATTT 21386 28 96.4 32 .......A.................... TTGCCGATTTCTTTTTAATCGACCCACATGCA 21446 28 92.9 32 .......A...C................ TGCTTAAAATTTCGTCTGAAATAATAAAAAAT 21506 28 78.6 192 .........TCC.......AT...A... ATAAATCATAGAATAAACCTAATAGGTAATTCTAAAATAGACACGCACAATTTCAGAAGAGATATCAACTTTCCTAAGTCGAAGCAGCCTAGAAATTTTTTAAATAGATTAATATTAGGAAAAGATAAGTTAATTGATATAATACAATTACTACTGGACAAGTAGCTGAGAATATTATTATTTTTTCTGTAT 21726 28 78.6 32 T..T...A...C.....T...G...... AAGCATCACCGTACACCCGAGCATTACCAGAC 21786 28 92.9 36 ...........C......T......... AAGCTTCCTAATTTTCGACCTCACTTATATCTCTTT 21850 28 67.9 0 AC.....A.GAC...A...AT....... | ========== ====== ====== ====== ============================ ================================================================================================================================================================================================ ================== 21 28 95.2 40 CTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CTTTTCATCGGCGGACGCGAAATTGGAAATGGATTTTCTGAACTAAATGATGCGGAAGATCAAAATCAACGTTTTGACGATCAAGTTGCCGCTAAAGAAGCCGGAGATGACGAAGCAATGTTTAAAGATGAAGATTTCGTTGTCGCTCTTGAACATGGTTTACCTCCAACTGCTGGTGAAGGTTTAGGTATTGACCGTTTAGCAATGCTATTTGCTAACGTCCCATCAATCCGCGATGTCATCTTATTCCCAGCAATGCGCCAAAAATAAGATTAAATTATCTCAAACTAAAGACTAGGCGTAACAAAACGCTTAGTCTTGTTTAATTTTAAAAGTGCCTCCATTTATGCTTCAACCTATCCCCTAAAATCCCCTTTTATTTTAAGTTAAAAATTTCTCCTTAAAAAACAGTAAATTATAAAACTCTTGTAAAAAAGGGTATTTAAGACAAAAATATTTTAACCTCTTGGTATATCAATAATTTTCAAATACAATACCTA # Right flank : AGCCGTCGATATCAGAATTTTCATCAGACTCATTTTAACTCCACATTAAGTGCAATACTAATATAAACTTTCTATTGTCAATTTTGTGATCTACTTAACAAATTTAATAAATAATTCAACGATAACATTGACAACGCTAAATCTAACCATAAAACTTAAGACAGATTTAAAATTATAATGGAGAAATCATGAATAAAGTTAGATTTGCTATTCAACAATTTCTTATTGAACAAAATGAGAAAAAATCTAAGAATAATAGAAAAAAATTAGAAAGCGTACAAAATCTGTCAGATTCAGAGCAAGAAAAACTACTAAAAAAGATCGCCAAATATGATGAAAAATATCAGTTTGATACTTGGATAGAAAATGCTGCAACAGTAATGGCAAAGCAAATCTATTTTGGCACACATATATCTCGTGGTATTCATTCTTCATCAAAAGGAGATAATGTTAATTTTAAAGGAAACTCAACACTCCCTGCAGGTATTATCGGGTCGCAA # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.75, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //