Array 1 123024-121317 **** Predicted by CRISPRDetect 2.4 *** >NZ_RADX01000093.1 Pseudomonas aeruginosa strain HUM-318-D1 PA3_D10_NODE_14_length_123190_cov_31.6767_ID_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 123023 28 100.0 32 ............................ ACGAAAGCAAAAAAGAATTCCCGGGCTGTGTA 122963 28 100.0 32 ............................ TTCGCAAGAGGGGCATCGAGGAAGTCAACACG 122903 28 100.0 32 ............................ TCGGAGAGGTTCGTCAGTTCGTAGAAGCCGGT 122843 28 100.0 32 ............................ TCCCAGTAGTCCCGCGTGGTGAACTTCACTCC 122783 28 100.0 32 ............................ TGCTGCCGTCCCCGATCCACAGCCTGCGCGGC 122723 28 100.0 32 ............................ GCCGAAACGCTCGTGCAATTCGTCAGCGATTC 122663 28 100.0 32 ............................ TCAATCGGGCATCCATTGGCGGCTGGTGGGGC 122603 28 100.0 32 ............................ GGCACACGAACGGATCGTTGTCGCTCGGAATG 122543 28 100.0 31 ............................ CACGCATGACCTGACTCAGCAGGTCCGGCGA 122484 28 100.0 32 ............................ AGGGAGGACCGGAGCGACAGGTACGACTGGCG 122424 28 100.0 32 ............................ TGGACGAGCTCCAGGACGCGCGAAAAGGTACC 122364 28 100.0 32 ............................ CGGTAGAGACGTCGGTGAGCGCTGCGATCTGC 122304 28 100.0 32 ............................ GCAATCGATCAGGCTATGACCGCCGAAGCCTA 122244 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 122184 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 122124 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 122064 28 100.0 32 ............................ ATTCCGGCAGAGGTTCGCGAAGCGGACATTGA 122004 28 100.0 32 ............................ TGTACCAACTGAGGTGCTACCTCAACCATGGC 121944 28 100.0 32 ............................ AGGCCGATGGAGTAGCCGGACAGCACTGAGCC 121884 28 100.0 32 ............................ TAGTGTGGAATTGATGTGCGCATCTTCTTAAA 121824 28 100.0 32 ............................ TGTGCCGGGCAGGCTGGCCAGCGCCTCATTGA 121764 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 121704 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 121644 28 100.0 32 ............................ TCCGGCACGCTGTGCTGAGCCTGAGCTACAGG 121584 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 121524 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 121464 28 100.0 32 ............................ TGCGCCCTAAATCAGTGATCCGGCGAATTTGG 121404 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 121344 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 29 28 99.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38046-38853 **** Predicted by CRISPRDetect 2.4 *** >NZ_RADX01000061.1 Pseudomonas aeruginosa strain HUM-318-D1 PA3_D10_NODE_47_length_48773_cov_31.3519_ID_93, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 38046 28 100.0 32 ............................ TCGCATTGCGCCTGCGTCATGATGCCCGACTC 38106 28 100.0 32 ............................ AGTACCAGCGATCTGCGAAACCGGACAACTCG 38166 28 100.0 32 ............................ GAGGAGCACGGGACGATAACAAGCGCAAAGGG 38226 28 100.0 32 ............................ TGGTGCAGATGGCCGCCGCGCGGGTACACGTT 38286 28 100.0 32 ............................ AGGCTGCCAAGTCGGTGCGCGAGGCCGGCTTT 38346 28 100.0 32 ............................ TCATAGGGCTGCGGCAGGTTGACCACGTCGCT 38406 28 100.0 32 ............................ ACACCCTAGGCTTCGCATAATGTGCAGACGTT 38466 28 100.0 32 ............................ AACATCGACGGGTCGAACTGCTCCGGCACCTG 38526 28 100.0 32 ............................ TCCCGCGGATACATGATCTGGTGGTGTCGCTC 38586 28 100.0 32 ............................ TCTGGCGAAGAGCGGGATGACAAGGGCAGAGC 38646 28 100.0 32 ............................ TTGCCCGTAGAAGTACGTTTCCTGTGCCATGT 38706 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 38766 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 38826 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 97.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAGCCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGACGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48607-47377 **** Predicted by CRISPRDetect 2.4 *** >NZ_RADX01000061.1 Pseudomonas aeruginosa strain HUM-318-D1 PA3_D10_NODE_47_length_48773_cov_31.3519_ID_93, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48606 28 100.0 32 ............................ AGTTGGGCAACGTTGCTTGTCGAAACGACGTA 48546 28 100.0 32 ............................ TTGTAGAGAGTCGACGCGCCCTTCAGCATGTA 48486 28 100.0 32 ............................ AGCATGACCAGCGCCAAGCGCTTACGGTGATA 48426 28 100.0 32 ............................ AAGTGCCGCCGCGATCAGCGCGGGGTCGCCAT 48366 28 100.0 32 ............................ TTGCTCAAGGCTTGGAACACTGGCCACCCCGG 48306 28 100.0 32 ............................ CTGAAAATGGCGCAGGAAACCGAGGTGGCCAT 48246 28 100.0 32 ............................ TGGCCCAGGTAGGTGGCCCAGTCCTGACCCTC 48186 28 100.0 32 ............................ TTGTCGGCCACGCGCAGGTTCTCCACGACGTT 48126 28 100.0 32 ............................ TGGAAGTCCCGCACCGAGATCGAGGCGTTCAT 48066 28 100.0 32 ............................ TGACTCTGCACGGTGTCGCAGATTGACACCTC 48006 28 100.0 33 ............................ AGGAACACGCTCGAAGTGTCCAGCACCCTTGGC 47945 28 100.0 32 ............................ ATCAATCGCTTGATCCCGTCTCGCATGAATGT 47885 28 100.0 32 ............................ AGTGCGGTCAGACCATTCACGCCACACTTGCT 47825 28 100.0 32 ............................ TCCCTGCACCGGAGTGGTATCGAGCAGCCAAT 47765 28 100.0 32 ............................ ACCCTTGCGCGCAGTGCTGCGACTTCCTCCGT 47705 28 100.0 32 ............................ ATGGCGTGCAGATCGTCGAGGAACGGCTGCAT 47645 28 100.0 32 ............................ AGAACGAGCCACGGGTATCGGCCTTCGACTCA 47585 28 100.0 32 ............................ TCTTTGCAATCTACAACAACCCTGATCGACGA 47525 28 100.0 33 ............................ TCGGGGCATGGGTCAGCCTCGCCGCGGTGCCGT 47464 28 100.0 32 ............................ TCCAGTAAGGCCAGCTCGGTCACGCGCATGCC 47404 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //