Array 1 720155-719255 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI669454.1 Helicobacter macacae MIT 99-5501 addTE-supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 720154 36 97.2 31 ....T............................... GCATTGTATAATGCTATAATGGACTTTATAG 720087 36 97.2 30 ....T............................... GCGTCCATCAAAACGCTTATTTCTTTTTCA 720021 36 97.2 31 ....T............................... TAGTCGATAGTTCCGCAGTAATCAGCCGAGC 719954 36 97.2 31 ....T............................... TCTCTTATATTGCACTTTTTCTTGCGAGGCT 719887 36 97.2 31 ....T............................... TCGCAGTAGAGGATTTCTTTGTCGATAAAGT 719820 36 100.0 30 .................................... GGACGCGGGCTCTTTATTTAACGCCGCTTT 719754 36 100.0 30 .................................... CTTTCGCCTAGCCAATAGTCAAGTCTTTCT 719688 36 100.0 30 .................................... AAATACGATGAAAATGAGAGGTATGAGGAG 719622 36 100.0 30 .................................... GCTCCAGTGCCTTGTACTAGAGCTCTTAGC 719556 36 100.0 30 .................................... TTTTATAGGATTCTTTTGTATAATCCTTAC 719490 36 100.0 30 .................................... CTATAGCCTTTAGACTTACCATTTGAAAAT 719424 36 100.0 32 .................................... CCAAATACTACGATGAAGATTAGAGGTATGAG 719356 36 100.0 30 .................................... AAGTTTTGTTTTATGTCAGCTTTGAAAGTT 719290 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 14 36 99.0 31 CTTTGAGTATGACCTGATTTTACAAGGGACTAAAAC # Left flank : TCTTTTATGCTTTTAGTATGACCTGATTTTACAAGGGACTAAAACAGCACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGACCTGATTTTACAAGGGACTAAAACATCATCTGCGCTTACTTCCTTGCAATCCCT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGAGTATGACCTGATTTTACAAGGGACTAAAAC # Alternate repeat : CTTTTAGTATGACCTGATTTTACAAGGGACTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.00,-2.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 3950-4777 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI669457.1 Helicobacter macacae MIT 99-5501 addTE-supercont1.4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 3950 36 100.0 30 .................................... GGGGAGGGACGGCGCGGTTAATCGCCGTCC 4016 36 100.0 30 .................................... TATATATAGTGCCATAGGATTATCACATTT 4082 36 100.0 30 .................................... GTATCAGAGAGCTGAAAAATTTAGTAAAAA 4148 36 100.0 30 .................................... ACGATTTTTGTCTTCATTTTTTGTCCTTTT 4214 36 100.0 30 .................................... AAGAGGAGAGAGAAGCTCTGTGCGAGTCGT 4280 36 100.0 30 .................................... AGGATTTTGTGTGTTGTGTGTGTGTGGTTA 4346 36 100.0 30 .................................... CTTATTGAACTGCACGAGCCCGAGTGTGCT 4412 36 100.0 29 .................................... CTTACAGAGCTTTCAAAAAAGACTGCGTA 4477 36 100.0 30 .................................... AAAAGCTAGCGTCCCGCCCCCCCTTTGCAG 4543 36 100.0 29 .................................... TTAAATTAGCCTCTATGGAATTGATGGGA 4608 36 100.0 32 .................................... TATAATAATGAGCGGATTTGACAGTAAGCTAA 4676 36 100.0 30 .................................... GCATTTAAGTGCAGGTATGACGCGGGCTTT 4742 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 13 36 100.0 30 ATTTTACCATAAGAGAATTTAACAAGCGGCTAAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATAAGAGAATTTAACAAGCGGCTAAAACCTGCTCGTAGCACTTATCATACTGATAATG # Right flank : | # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCATAAGAGAATTTAACAAGCGGCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //