Array 1 4267-2347 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYZH01000051.1 Salmonella enterica strain BCW_6159 NODE_51_length_25496_cov_3.85987, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4266 29 100.0 32 ............................. AGAGTGAAGCGTGGAAGGCGCAGATTCGTGGC 4205 29 100.0 32 ............................. CACGTTTAAAACGTGCAAGTTTTATTTTTCGT 4144 29 100.0 32 ............................. ATGGGCGCATATAACCGCGCCCTGAAACGAAC 4083 29 100.0 32 ............................. CGCGACGCGCGTGGGAGGTTCGAAAAAGAGAA 4022 29 100.0 32 ............................. CCGTCGCCGTCGCAGCTACCGAAGCCGTAGCC 3961 29 100.0 32 ............................. GCGATCAACAAGCTGGAACGGCAGTATTTAAA 3900 29 100.0 32 ............................. CAAGTGAGGTTGCATTTAGTGTTGCGACAAAA 3839 29 100.0 32 ............................. TATGATTTCTTGCGGAAAATTCAGTTTTTGAG 3778 29 96.6 32 ............................T TCATCAGCACAGACGTTAATTGATGCCAATAC 3717 29 100.0 32 ............................. CAAACGATGCAATCATCGGCATGTTGTGCTCA 3656 29 100.0 32 ............................. GTGCATCAAAAGTTGCAGCAGAATCGAACATG 3595 29 100.0 32 ............................. GTGCATTCCGGCAACATAATTGAGTTTGCCAA 3534 29 100.0 32 ............................. CGAGCACTGGCTAAGATGCCACTGTTGAAAGT 3473 29 100.0 32 ............................. TTCTTTGGGTACGATACCGGATGGCGCGCCAA 3412 29 100.0 32 ............................. TTGCCGGTTAATGGCGTGGCGATGCCTGACAA 3351 29 100.0 32 ............................. CGTGAAATGGGGCGGCGCATGAACATTAAATT 3290 29 100.0 32 ............................. GCTGATACGCAGACGATCACGAGCTATCTGGG 3229 29 100.0 32 ............................. CAAAACGATCCCAGCGCTTACGTTAAATTTAA 3168 29 100.0 32 ............................. GCTCTCTCGATGCTGAAGCCAGTGAAGGTATT 3107 29 100.0 33 ............................. CTGACGGGGTGCATTTCTCAATACCGGTGACAC 3045 29 100.0 32 ............................. CTCATAGAAAAATGGGACCCACGTTTCTTTAC 2984 29 100.0 32 ............................. GTAAAAACGGCGGCTGATCTTCCGGTAAGTAG 2923 29 100.0 32 ............................. TCCACGTGCGTGGTCAGTTCCCGTCATCGTCA 2862 29 100.0 32 ............................. GAGGGCTGGATGAGATTAAAAGCGGGCGGGGT 2801 29 100.0 32 ............................. GCGGCGAATATCATGATCGTTGTCCCGATCAG 2740 29 100.0 32 ............................. CACTCGATAAGGATGAAAATACTGTATATGAA 2679 29 100.0 32 ............................. GTTGGCTGTAGTGTTGCAACGCTTGAGGAAGC 2618 29 100.0 32 ............................. ATGCCGTACATAGTCCCCATATGGTTTGTGAT 2557 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 2496 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 2435 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 2374 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1563-3606 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYZH01000095.1 Salmonella enterica strain BCW_6159 NODE_95_length_15590_cov_3.78329, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1563 29 96.6 32 ............................A TGTTTGATCCGGCATTTGTGGCGGGGTGAGCA 1624 29 100.0 32 ............................. GCCGCAGAAACCTGGCTAACCGGCACCGAGGC 1685 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCACTA 1746 29 96.6 32 ............................C GTAAATTTTACTGTAATCAATTGTGCTGTCCC 1807 29 100.0 32 ............................. CTAAAAATGGATGTGGCGCCGTAGGGGTTTGC 1868 29 100.0 32 ............................. GAGCGCAGGGATGAATTACGATCCACGCAATA 1929 29 100.0 32 ............................. AATTTCCGGTTGAGCACCAGGAATACATCAAC 1990 29 100.0 32 ............................. CGCAGGGGCGCCCGCTGTGGCTCCCGGCAGTG 2051 29 100.0 32 ............................. GGCGGTTAAACCGCCCTTTCTCATATTTTCCA 2112 29 100.0 33 ............................. TTCCCCGGCAATCTGTTTCAGTGCTACTGGGGC 2174 29 100.0 32 ............................. CCTTGATTTTGAACCCGCTGGCGAACTGGATA 2235 29 100.0 32 ............................. GCGCAGCAAATTATTACTATTACGTTAACTGA 2296 29 100.0 32 ............................. GCTGTATTTATCGAATTACGCTGCGAGCTGCG 2357 29 100.0 32 ............................. AAAACCCGCGAGGCTAATCTGACACAGGCGCA 2418 29 100.0 32 ............................. GCTATAAATGGCTGGTCGAGGCTAACGAATAT 2479 29 100.0 32 ............................. CAACCAGTGGCCTGCGCCAATCACCGAAGATT 2540 29 100.0 32 ............................. CATCGACTTCGGCATAGCGGATTTCTAAGCAG 2601 29 100.0 32 ............................. TTCCCGCGATGGGATAGCTCAATCAAAATCAG 2662 29 100.0 32 ............................. CTGCTGAGTAGCGTGATCAGGTCGTCAATTGG 2723 29 100.0 32 ............................. GCTCTCAGTTTGATGGATGGGAAAAAACGCTT 2784 29 100.0 32 ............................. GCGGGAAACTAAACAGGGCCACGTTTGCGGTT 2845 29 100.0 32 ............................. GTATTGCGCCGCCTGGTTGAGCGTTACGCCGA 2906 29 100.0 32 ............................. TTTCATGACCGATGAAGTGACAACCAACGACG 2967 29 96.6 32 ..............T.............. TTATATCCCCCCTCCTTGACGTTCTCTTCGGT 3028 29 100.0 32 ............................. GGACGAAAACGACGTCCGCTGCGTAAAAACCC 3089 29 100.0 32 ............................. AACTAGCGCCTGCTCCGGACGGCTTGCCCTCT 3150 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 3211 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 3272 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 3333 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 3394 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 3455 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 3516 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3577 29 93.1 0 A...........T................ | A [3603] ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGATTGTGGTCACAGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //