Array 1 517841-512173 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIVW01000001.1 Vibrio cholerae O139 strain NALMLE47 NODE_1_length_531194_cov_34.41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 517840 28 100.0 32 ............................ TTGGTGATTTAGGCCGAAGAAGTTCTGCTTCA 517780 28 100.0 32 ............................ TATAGGCAATTTAACAAGTCAGTTATTTGCCA 517720 28 100.0 32 ............................ CAGAGAATGTCTTGGGGGGCGTTTTCATCATC 517660 28 100.0 32 ............................ AATTACATCCTACAAAATAAACAAAGCTACGT 517600 28 100.0 32 ............................ ATTGGTGCAACTCAGAAAGAATTGGGAGACCT 517540 28 100.0 32 ............................ AGATTGGCTGGGGAAAAGCATCTGAACTCTAA 517480 28 100.0 32 ............................ TAGCAAGCTTTCCATCTTTTCAGGGTCGAATT 517420 28 100.0 32 ............................ TGCACCGTTAACAACTAATGACTTAACCCAAT 517360 28 100.0 32 ............................ TGCCATCGCAATCGCTGATTATTGTCGATGCC 517300 28 100.0 32 ............................ TCTAATCATGTCAACAAAGTCCATAACTGCTG 517240 28 100.0 32 ............................ TGCCGCACCAGAGGCTAAAGCCGTCCATTGAT 517180 28 100.0 32 ............................ TTCTGCGATACCAAACTGACCACCGTGTAAAA 517120 28 100.0 32 ............................ TTTAACTAAATTGCCAAGCACAAGCACATTAT 517060 28 100.0 32 ............................ TCATCTCTTGATACTGAGGTAGCATCTACCCG 517000 28 100.0 32 ............................ CTTAAGAGGAATGGGGGTGTATCCTAGTTCTG 516940 28 100.0 32 ............................ CATTGGCAAAAGCCAGATCATTGCCATCCCAG 516880 28 100.0 32 ............................ TATGGTGAAATTAATCAAAGCTTAATCCTCAT 516820 28 100.0 32 ............................ TAAAAGCAAAGTGGGTGCCGAAGGTGAGGACA 516760 28 100.0 32 ............................ ACGCCAAGAACCGGCTTGTTTGGCCGCTTTAC 516700 28 100.0 32 ............................ AGTTCCAACTCTTCTGAATTGCGTTGTCATAG 516640 28 100.0 32 ............................ TTTAAGCACAGAAGCAGAAGCGTTACTCAACC 516580 28 100.0 32 ............................ TTTTACGCCAACAACGGCCAAGACGAAGACAA 516520 28 100.0 32 ............................ GTAAAATTGTTTCTCACGCTTGATTAAGTCTG 516460 28 100.0 32 ............................ TTGATTGGCAACCAACAGCGCCTTCAAAACCC 516400 28 100.0 32 ............................ TTATAGCCTAATAGCATTGACTCATAAGCATG 516340 28 100.0 32 ............................ TCGGCGATAAAGTGGGCGCTCAGTTTGTTGAT 516280 28 100.0 32 ............................ TCTACGAGAAGAAAGGCCAGCGCTTTTTCAAT 516220 28 100.0 32 ............................ TCTTCAGAGATGCAGTAACCGAACTCATCAAA 516160 28 100.0 32 ............................ CGCATCAAACTGCAGGCGGTTGCCGTCAATGA 516100 28 100.0 32 ............................ AAAATTTCACCACGGAACATGTTATGTCACAT 516040 28 100.0 32 ............................ TGAGCGATGGCTTTAACGGCTTTGCTTCGTTC 515980 28 100.0 32 ............................ ACCAACCAAAGCAGCAAATCAGCCACATTCAT 515920 28 100.0 32 ............................ CGTAACACTGCGCGTAGCAACCGTAACAAAGC 515860 28 100.0 32 ............................ TTTAGTTCAGAATTTGGAATAACCTTGCCGCA 515800 28 100.0 32 ............................ CAATTCCTCGATCTCAGCATGTTTTATTTCCA 515740 28 100.0 32 ............................ TGACTTGAGCTGTTAGGCCGCTTTCCTGCGGA 515680 28 100.0 32 ............................ TTCATCATCGCGATTCGTTCGCGACGCTCGTC 515620 28 100.0 32 ............................ AAGGCTCGTTCTGGATGCTTGCTTCGATTTGC 515560 28 100.0 32 ............................ TCGCGAAAAGAGAAAAGCGCGCCGAAAAAGAT 515500 28 100.0 32 ............................ TCTCGATTGGCGATCTCGCTCATCAGCGACAG 515440 28 100.0 32 ............................ GATGTGGACTCCGCAAGAAAGGTAGCCGGAGC 515380 28 100.0 32 ............................ TTCAAAAACGGATTGATGCCAACGGTCGCTTT 515320 28 100.0 32 ............................ TGATTTTATTCCATTAACCTGAACATCAGTTG 515260 28 100.0 32 ............................ TATCTTGTCCGCACTAACACCTTGCTCAAGAA 515200 28 100.0 32 ............................ TCTTGGTTGGCGCAAGGTAAATCGTCAAACAA 515140 28 100.0 32 ............................ AGATAGCAGTTATGTCGTTGACACTATTGCCG 515080 28 100.0 32 ............................ TTTTCGTTTAGTACCGTCAGGACATCCATTTG 515020 28 100.0 32 ............................ GTTACGTAACGGAAACCGCGCTTATACATTTT 514960 28 100.0 32 ............................ TCATCGCTGTACGGTTGCAAGCCGTTTTCGTG 514900 28 100.0 32 ............................ TTGGGTGGTGGTTTTGCTTGCGAGGAAGAATT 514840 28 100.0 32 ............................ AAGAAGATTTGTTTGATGTCATTTTTTTAACT 514780 28 100.0 32 ............................ TTCATGATTGCTGAGCGATTGAATTTGCCGTT 514720 28 100.0 32 ............................ TTGGCTGCGTGAGCAATGTATGACTCTGTGTT 514660 28 100.0 32 ............................ ATTAACACCCAAGAATCGTACTTGACACTCAG 514600 28 100.0 32 ............................ TGACAGAGAAAGCGATGCTTTACACAATCCCG 514540 28 100.0 32 ............................ TGTGCGTTTGCGCGCTTATTCTTTTTGCTGAT 514480 28 100.0 32 ............................ TGATTCATAAGCAGCTTTGACTCGCTGAAAGT 514420 28 100.0 32 ............................ TGTATACATGCCTTCTGGGTGCGACTTGGCTT 514360 28 100.0 32 ............................ AGTTACTGATCGATGAACATAGCTTAGAGAAC 514300 28 100.0 32 ............................ TGGCATTGCTAACCCACAAAAAGAAGCCGCCG 514240 28 100.0 32 ............................ TTCGGCATGATACACGATCACATCGTTTGGCT 514180 28 100.0 32 ............................ TGTCGGGATCGTAATTGGACCAATGACGTTAT 514120 28 100.0 32 ............................ TTCGGGCGCTCGAAAATTCCATCCGCTGATAT 514060 28 100.0 32 ............................ AAAATTCCCCCTCTCGCAAAAGAATTTTATGC 514000 28 100.0 32 ............................ TTTTCGCAAATACTCGCCACAGACCTCGGCTA 513940 28 100.0 32 ............................ TTACTGTTGTACAAACTATTTATAAAAAATTT 513880 28 100.0 32 ............................ ATTACACACATCAGTGTCGCCGTTGAGTACAG 513820 28 100.0 32 ............................ TTCTGCCTCTTCGAGCAGAAATTCAACCCCAC 513760 28 100.0 32 ............................ ATTTTACTTACCTATGGTGCGGCGGTATTGCC 513700 28 100.0 32 ............................ TCCGAGTCCCGTCGTCGTGCGCACACTGCCAA 513640 28 100.0 32 ............................ TTTTTCGAGGATGGACTGCATCACCGCAGAAT 513580 28 100.0 32 ............................ AATCGAGGTGATAGCCTGATGTGACGATAGCC 513520 28 100.0 32 ............................ TTGAATCGCAATCTGTGTCTGGCTCACCACTT 513460 28 100.0 32 ............................ TGAAAGATTCAGGCCTTGATATCTGGACTTAC 513400 28 100.0 32 ............................ TCTAGACCTTCTCGGTAAACCTTGTTTGCTGT 513340 28 100.0 32 ............................ TTATAGGAACTTCTTAGCAAATTTATACAGTC 513280 28 100.0 32 ............................ TTTGAGACCAGTACCCATCTCGCACGAAGAAA 513220 28 100.0 32 ............................ TGAATTGAAAGCGACCGTTATCAAGACGTTTC 513160 28 96.4 32 ...........T................ GCTAATCGAGGCACTAGAGGGGCAGAAGATGA 513100 28 96.4 32 ...........T................ AGTTGGATCTTATGCGTATGTGGAGAGGGGGA 513040 28 96.4 32 ...........T................ TATTTGCGGGAAAGAATTCAAGCAAAGAAACT 512980 28 96.4 32 ...........T................ ACCACTGACAGCGCCATTAGCCACATTATCTG 512920 28 96.4 32 ...........T................ TTGCTTTGAGCTGGGCACTGTCTGAGCCGTGA 512860 28 100.0 32 ............................ TAATGAAGACGTTCGTTCTCTCTTAAAATCAA 512800 28 100.0 32 ............................ GTCGAGCATTTGAAGCAACCAAAAGTGAAGCT 512740 28 96.4 32 ...........T................ GCAAGCAGATGAAGATGGCATCAGGCGAAGGC 512680 28 100.0 32 ............................ TGAAGCTCTCTTACTCAAGAGAATCTGTGATC 512620 28 100.0 32 ............................ TATCGCGATCAGTCGGCGTTGTTTCCACCGTC 512560 28 96.4 32 ...........T................ GGACGGAGCGGCGCTGAGCGGAGGAGGACGCG 512500 28 96.4 32 ...........T................ GCTTCCAGCGTCATCGCTGGGTTAGCCAAGGC 512440 28 96.4 32 ...........T................ AAACAGCTCGCTATGCCGATCACTAGAATTCG 512380 28 96.4 32 ...........T................ AGTTTCTTGCGTGTTTTGGTCAGAAGATAATG 512320 28 96.4 32 ...........T................ TGCCAAAGGGTGCAATCATTCTCATTGATGAA 512260 28 96.4 32 ...........T................ TTTGCATTCAAAAGCATCACAAGAAGCGCCAG 512200 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================ ================== 95 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACCGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGCGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGGAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGTATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCACTGCGTACCTGGTTATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //