Array 1 49774-45047 **** Predicted by CRISPRDetect 2.4 *** >NZ_PXMF01000011.1 Acinetobacter baumannii strain AB31 D60061-31_R1__paired__trimmed__paired__contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 49773 29 96.6 31 ............................T ATTTCTCGTGGTCGTGAAGCACCACAAGCTC 49713 29 96.6 31 ............................T TGCCGTGTGGGTAATGAGCTTCTCTTTGTTC 49653 29 100.0 31 ............................. ACATCAGTTATCTCTATCTTTGGGATCATAA 49593 29 96.6 31 ............................T TAATCGCACCCATCGCATCTTGGACATTACC 49533 29 96.6 31 ............................T CGGATTCGGTGGAATTAGAAACCCTAGACAA 49473 29 100.0 31 ............................. TATAAATTTAGAATTCCATTAAAGTCATTTC 49413 29 96.6 31 ............................T TAGGTGCAGCAAGCTCTAATTGTTTTTGAGC 49353 29 96.6 31 ............................T CTACCCTGAATCCTGATTCCTTTAACACTGA 49293 29 100.0 31 ............................. AGATAGGTCCAATAAACCCGATCACCGATTT 49233 29 96.6 31 ............................T TGAGGATTATGTCGATAACGAAAAAGCTAAT 49173 29 100.0 31 ............................. TCAACACCGACACGAGTTTGAGCCAATGTAA 49113 29 100.0 31 ............................. TGAAGCTGTTTAGCGAATTTGGAGAGCTTGC 49053 29 96.6 31 ............................T ACATGGGCTTTTAGCCACTCCAGAATCATGT 48993 29 96.6 31 ............................C AGAGCCTCCGCCTGTCGGTTTTGGTTGTGAT 48933 29 96.6 31 ............................G TCTTGGTCTTGGCTGCTTAACAATTCGGTTT 48873 29 96.6 31 ............................G TGAGCGAGATTACTTTGTTAATCAGTACAAA 48813 29 96.6 31 ............................C AGTGTAAATACGTACTGGAGGGCAAATGGGA 48753 29 100.0 31 ............................. CTATAGATTCACCCTATATAAGTTTTACTTA 48693 29 96.6 31 ............................C AGTAAATGTGGCTGCTACCATTAAGGGTATT 48633 29 100.0 31 ............................. ATATGACCACGGACACTTTGTATCACGTATT 48573 29 96.6 31 ............................T TTCATGCGGGCCTTGATTTCCAGATCAGCAG 48513 29 100.0 31 ............................. AGCGAACACCATTGCCATCAGCAACAGATTC 48453 29 100.0 31 ............................. GAACCTCCGCCTGTTGGTTTTGGTTGTGATG 48393 29 100.0 31 ............................. CCCAGCTAATTAGGCGCTCTTTGTATGGCTT 48333 29 96.6 31 ............................C CACTTAGAACGTACTGTCTTAAAATCGTTAA 48273 29 100.0 31 ............................. AAGAGCAAGCTGATATGTGGCTCAAGAACGA 48213 29 96.6 31 ............................T TAATTGGATCTCGTTTAAGTTGGGTGCTTTT 48153 29 100.0 31 ............................. TAATGCCAGCGCCAGAAATGGTGTCTGATAA 48093 29 100.0 31 ............................. GCCGCTAACGCTCAAGCTCAGGCGTTATTAA 48033 29 100.0 31 ............................. AAGGAGCCAGTTGCAGAGTGGATGCTGTTTA 47973 29 100.0 31 ............................. GTCTTGATGATTTTGTCATTCTCGCCGTGTA 47913 29 96.6 31 ............................T ACGGCGCGGAAACCAGTGGGGAAATGTATTT 47853 29 96.6 31 ............................G TTTGGTTGAGGTTGATGACGTTCTTAAATCA 47793 29 96.6 31 ............................C GTATGGAAAACCGTTCGTCGTGTGACTGATG 47733 29 96.6 31 ............................T ATATGAACACATTAATGTATTGCTCAACACA 47673 29 96.6 31 ............................T GAATTACGTGCATCATTGGTTCCAGCAAATA 47613 29 100.0 31 ............................. TCCGGTGAAGCCCCGAACATTTCAATGAAAG 47553 29 100.0 31 ............................. ATGTTATTTAGATCTGCTGTCTCCCAATCTT 47493 29 96.6 31 ............................T GATTGAGCAGAAACGGTTTTAGATGCAACTA 47433 29 96.6 31 ............................T TTTTGGATGATTAGGAGTTACATCACAACTT 47373 29 96.6 31 ............................T TGCATAGCAGCAATTGCAAACTGATCACGTA 47313 29 96.6 31 ............................T TCCAGTATTGGTTGTTATTCTTGCCAATACC 47253 29 100.0 31 ............................. TAAAGGAGCCAGCCATGAGTGAGTTTAAAGT 47193 29 96.6 31 ............................T GAATTACGTGCATCATTGGTTCCAGCAAATA 47133 29 100.0 31 ............................. AAGCATCAAATTGATTTTGATTTATGGGCAC 47073 29 96.6 31 ............................T GAGCCAATGTTGTAAGTCAGCGATACCAAAG 47013 29 96.6 31 ............................T CAATTGGAACGATATCAGGCTAATAACTACG 46953 29 100.0 31 ............................. AGTAAACGTAATGAGCAGTTACAAGCTGCTA 46893 29 100.0 31 ............................. ACAACGGGTGAACCTGTTACGCCAAAACCCT 46833 29 96.6 31 ............................C TGATGCTCAGGATCCAAATGCACCTGATGTA 46773 29 96.6 31 ............................T TATGATGCTGTAGCGTCTCAAATCATGTCTG 46713 29 100.0 31 ............................. GTTACCACAAGTGATAACACAGCAAGACCAA 46653 29 100.0 31 ............................. ATTCGGATCTGATTAACTGGACTGTCGGTCT 46593 29 100.0 31 ............................. TTCACCAGCCTCGGCTAGACTTGATGCTCCT 46533 29 96.6 31 ............................T TTAACCGAGATCAAGAAGTAATTGCTTGGGC 46473 29 96.6 31 ............................T GTTTTGCTAATTTATCAATATCGATTTTCAC 46413 29 93.1 31 ...AC........................ CAGGGGTCAAGTTCAGAAGATTTACGTTACA 46353 29 82.8 31 ...GC.......CC..............G GTATTAGTGCGAATTGGCTTTTAGCCCACGC 46293 29 89.7 31 ....C.......G...............T TAAATGCTCAACTATTTCTGTAGCTAATGGA 46233 28 82.8 31 ...GC....T...-..............T TCAAATGATTTAATGAGCTTGTAGCCATTTT 46174 29 89.7 31 ...GC.......T................ CGTCTTCTAATGATGGACTTTAATCCAATAT 46114 29 82.8 31 A..GA.......TC............... TCTCACTGAAGATATGACCATCACTTTCTTC 46054 29 82.8 31 ..CGC.......CC............... AGCCATTTACTTTGATAAAGCGTCACATAGC 45994 29 96.6 31 ............................T AGGAAATTCTATCGGCCCAGCATCTACAAAT 45934 29 100.0 31 ............................. AGAGACACATCGTTAATAATCTCTTGTGCGG 45874 29 100.0 31 ............................. TGAGCAAATTATCAATTGATCTATCTGCAAG 45814 29 89.7 31 ............CC..............T AGACGGTGTTACCTGTAGGCGGTGTCTACTG 45754 29 89.7 31 ...TC.......C................ TCGTTTGAATAATATGGACAATCCAGCCAAT 45694 29 86.2 31 ....G.......TC..............G CAGCATCAAACGAGATATTGGCTAACATATT 45634 29 79.3 31 ...G......A.CC...........C..C AAATAGTTTTAGCTATCTGAGCATTTAATTT 45574 29 89.7 31 ....G.......C...............T TCATCACGTAGCCTTTTACACGCATCTTGCG 45514 29 93.1 50 ....................C.......T GTACGCTGAGTATTGATATTGACATTCAGGGCATTCAGAATTTGGCGCTC 45435 29 89.7 30 ....G........C..............C CAGTTTGCTGAAAATCACCAATACGGTCTT G [45409] 45375 29 79.3 31 ...TC......TCC..............G ATTCTATGAGCGTGACCATGACTCTATTTAA 45315 29 89.7 31 ...GC.......C................ TTATCCAGATAAAACCATATCTACAAAGTGG 45255 29 93.1 31 ....G.......................G ATCATCTACAGTGATTGAATAAACGGTTTTT 45195 29 82.8 31 ...GC......TG...............C AACGACGACGCCGTGTGTTTGTTATCGGAAG 45135 29 79.3 31 ...GC....T..TC..............C AAGTAGGATTTGCAGCCCCAATAGTCTTTAT 45075 29 75.9 0 ....G....T...C.A........AT..T | ========== ====== ====== ====== ============================= ================================================== ================== 79 29 95.1 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCAAGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGTTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTTATGCCAGTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTGAATCTTAAAAAGAAAAAACCCCGAAACTTACGTTTCAGGGCTTTTTCGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACAT # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [50-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //