Array 1 96369-94753 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIHV010000109.1 Escherichia coli strain B-6 ESC_QB0113AA_AS_NODE_4_length_228627_cv_10.821641, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 96368 29 100.0 32 ............................. TCGTTAAAACCGGTCCTAACGGCTTACCTACC 96307 29 100.0 32 ............................. TTGGCAACGCAACTAAAGACAAAAATGGCGAG 96246 29 100.0 32 ............................. GCGAGACGGTAACAGCGGATATTGTGCAGGCG 96185 29 100.0 32 ............................. TTACGCGCCTGGCTGGCGAACCGCTGGAACTG 96124 29 96.6 33 ............................T GGCCTGGATTTTTTCGAACACCACCCGCTCGTT 96062 29 96.6 32 ............T................ CAAATATATTTTGCGTTAATTATTCGAGGTAA 96001 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 95940 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 95879 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 95818 29 100.0 32 ............................. TACCGCTGTTCATGCCGGAAATTGACCGGACC 95757 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 95696 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 95635 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 95574 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 95513 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 95452 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 95391 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 95330 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 95269 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 95208 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 95147 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 95086 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 95025 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 94964 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 94903 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 94842 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 94781 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 123136-122070 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIHV010000109.1 Escherichia coli strain B-6 ESC_QB0113AA_AS_NODE_4_length_228627_cv_10.821641, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 123135 29 100.0 32 ............................. CTGGCAGCACTGCGGGAAATATTGTTGCTGCT 123074 29 100.0 32 ............................. GCGGTAATTGCGTTATTTTGGCTGTTTTCCGC 123013 29 100.0 32 ............................. TCGTCGGGTCCAACAGGGGTCGGTTGTTCGCC 122952 29 100.0 32 ............................. GAGCTGATATTTTGATAACATCAACAGTTCAA 122891 29 100.0 32 ............................. ATCGCGGCTCGACCCGGAGGCTCTATCTTGAG 122830 29 100.0 32 ............................. CGCAACATCGCCAGATTTGTCGTAGGAAAGCA 122769 29 100.0 32 ............................. CTGCTTTCGTTTTAGGCAAGCTGTCATCTGGG 122708 29 100.0 32 ............................. CGGAGCGTGTCTTGTGCTGCGTTACGGTAAAA 122647 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 122586 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 122525 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 122464 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 122403 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 122342 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 122281 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 122220 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 122159 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 122098 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //