Array 1 55134-54373 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JACGPH010000012.1 Staphylococcus epidermidis strain R6035 contig00012, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     55133	    36	 100.0	    30	....................................	AGTGGACGCAAAAAGGCCGTTTATTCATCT	
     55067	    36	 100.0	    30	....................................	CATCTTACCTTGCTATTATGACGGTAAACA	
     55001	    36	 100.0	    30	....................................	TATCTTTTATGTTGGAACCAAATTCAACTG	
     54935	    36	 100.0	    30	....................................	TTGTAAAAGCTAAAAATGAGGAAGAACTGT	
     54869	    36	 100.0	    30	....................................	CAACCGAAATAGAACAAGCTATAAAAAATA	
     54803	    36	 100.0	    30	....................................	GAAAAATTCATTCACTCAATGGGAAATCAA	
     54737	    36	 100.0	    30	....................................	TGTTTATTCAGTTTTGTGATTTATATAATA	
     54671	    36	 100.0	    30	....................................	AAATCGCTCATGCGCATCACTACACAGAGG	
     54605	    36	 100.0	    30	....................................	GTCTCTCGGACGTTGGTTCGGTTGGCTAGG	
     54539	    36	 100.0	    30	....................................	TTATCTTCATCATTTGGACAAGCCCACATG	
     54473	    36	 100.0	    30	....................................	ATAAACCAGTCATACCTCTTGCCCAGTATA	
     54407	    35	  94.4	     0	................-..................C	|                             	
==========	======	======	======	====================================	==============================	==================
        12	    36	  99.5	    30	GTTTTAGTACTCTGTAATTTTAGGTATAAGGTATAT	                              	       

# Left flank :   ATTATCAAGCAAAAGAAAAATCATTTGTAATCTATTTATATCCAGAAGCTGGTCTTAGCATTAAAGAACAAATAAGATTTAGGAAAATACTAAATAACTTACCTGTTCCGGTCATTGTTTTAACCGAATCACCCCGTTTTTTATCTGAAAGTATTAAGGGACTAAATTATTTTATTAATAATATTCAAATGATTACAGAATCTTTTTTTGAAGATAGCTATTGGAATGCGCCAATTAATGTGGAAAAAGAACGGATTAAAGAGAGGTTTGAGTATTTATTTGTAAAATATTGTTCAGTTTTAGAAATAAAACCGATTATCTCTAACTACTTGCTTGCGGATATTATTGTTTTTAATGATATTGATCTTTATATCATTGTTTCATTTTTAAAACATTGTAATTTAGAATATCAATTAGATATCGATAAAACAAAAATTTCATTAGCGTTATCAACTTATCTATTTTCTTAATTATAATTCAAGGTTATAATTGTGCTAGAG
# Right flank :  CCTTTCTTGAATGTCATTTCTAAGTTGTTTGCAACAGTTTATGGTTATTTAGAGAGCATAGTAATGAAAAATGGGATTTAGTACCAAAAGCAGGACGCTCACCATATGATAAATATAATGACGAGGAAACTTTTTATGCGTGGAAACGACAGGCTATGATATTTCTGAAAGAATCATACAATGATTGGGATATGTTAACGATTGCACAATATCATGGGTTAGCGACGAGGCTATTAGATTGGAGTTTCAATCCATTAGTAGCAGCTTATTTCGCTGTGAAAGACTTTGAGGATTGTGATGCTGTTATTTATGCTTATTTGAAAAAATCAGATATTAATGTCAAGGAAGTACATCCAATTGAGAGTAAGGGAATAAAGAAAGTGAAACCAAATGGACTAGCAACAAGAGTAGTAAGACAAAGTGGTATTTTCACAATTCATGAACAACCAACTGCGTCTATTGAAGATAACTTATCGAAAAAAGAAAAATTAAATAAAATT

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTACTCTGTAATTTTAGGTATAAGGTATAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:75.00%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-3.60] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [2-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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