Array 1 12109-10209 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDZF01000009.1 Sulfobacillus thermosulfidooxidans strain ZJ contig17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 12108 30 100.0 37 .............................. GCGCTAATTCCTCCTAACCAGGTGTCCAGGAGTTTCT 12041 30 100.0 36 .............................. CCAGGCGTCACATTCGACGCCTGGACAGGAACAGGA 11975 30 100.0 36 .............................. GACTATGGGCAGGTGGCGAGCAGTATAGCCACACGC 11909 30 100.0 37 .............................. GCGCGAAAGACCAAGGAGGCAAAGTACGCTTTTGGTC 11842 30 100.0 35 .............................. TCATAGCTAGGCATTTTTAATTATGCCTATATGTG 11777 30 100.0 36 .............................. CCCAGGAGTAACATCAAAAAAGGCTGCGCAAAAACT 11711 30 100.0 37 .............................. GGAATTCCTAGCCATGCATATAATGGCTATTTCTTTT 11644 30 100.0 36 .............................. AGTGATGCGGCGCATATGGCCGAAGATGCCTGGCAA 11578 30 100.0 35 .............................. TCCGCGCTCAATAACGCGGGCATGAACTTCAATAA 11513 30 100.0 34 .............................. TACTGAACGGCTAGATAATTTTAAATTTATGTGT 11449 30 100.0 38 .............................. GCCGATCCAATGCGTCAGCGTGGCGGTCGTGCGCGCCG 11381 30 100.0 40 .............................. GCGACGTTAACTGTTTGCGCCGTAGGGAAGACTACCTTCA 11311 30 100.0 35 .............................. TTCGATATCGAGTTTAGATCCGGTAGCGAGTAGCC 11246 30 100.0 39 .............................. TCCGTACTCGTGAACGAAACCTTGGCCAATGACCGGGGA 11177 30 100.0 36 .............................. AAGACCATAAGCAACGTATGCCTTATCGTCAAGTAC 11111 30 100.0 36 .............................. ACGCACATACTCCGCACGCTCCAAATACCGTCGACG 11045 30 100.0 37 .............................. ACCAGCACGGAAAACGCCCCCGTATCGAGGAGCATCT 10978 30 100.0 36 .............................. TCACGGATAGCATTGAAGCGGCAGAGGCGTTAGAAC 10912 30 86.7 46 .......................GA.G..T TGAAACTGGGCATGAGGATTCCCCCCGCGAAACGGATGCGACATCA 10836 30 100.0 39 .............................. AACACCACAACCAAGGCCACCAACATACCCGCCCACAGC 10767 30 100.0 44 .............................. AAGCTGACTGGGAAATAACGTATGCCCAATCGGGTAAATTCTTA 10693 30 100.0 35 .............................. GGTATAGTGATATGAGAATGACTCAACTAATTCTT 10628 30 100.0 34 .............................. AAAAATCCACAGTCCCGACACGAACCAGTAGCGT 10564 30 100.0 35 .............................. ATTACATTCGTGAAGAACAGTATTTGCTTTTGTTG 10499 30 100.0 35 .............................. TTCCCCCCAAAAAAAGACGTATATTCCGAACCCGT 10434 30 100.0 36 .............................. TTACTTTTTTGGTTGTGGTCATTTCTATTCTCCTCC 10368 30 100.0 35 .............................. CCAATTCAACGGCAACAGTAGACACAAATATTCAA 10303 30 100.0 35 .............................. CCGACATGTTTGGAATTCAATTCTAAAAAGGAGAG 10238 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 29 30 99.5 37 GTTCGTAGCCTACCTATGAGGAATTGAAAC # Left flank : AGAAAAACACTTTTTACGCGATACACGTTATGAACTCTTTGTCGCGCAATGGTAAAGGAGCGCAATAATGTTTGTGATTCTTGTTTACGATGCCGGAGTCAAGCGGGATCCCAAGATTCTCAAAACATGCCGTAAATATTTAAATTGGATTCAGAATTCTGTGTTTGAAGGTGAATTGACCGAGGGGAAACTCAAAAAAATTACACCGTGAACTCGGGGATATTATTAACCCGCGAGAAGACATGTATGTTTGGGAGAGCCAGTGGTATCATTCCCGCATTCGTCTCGGACAGCCGAAAGGTGAAGACGGATTTATTCTCTAGGCACCGGTAAATTTGTCGTCGATCGTCAATAGCGCAAAAACCCCTGGGGATCGACGACAATCCCCAAAATCCCGAAAACGTTATGCAGTCTAGGTTCCAGACTTTTATCATTAATAAATGACAACTATTTCCATATATTATTCGATTGACAAGCCTGTTACAGAGCCGCAAAATGGG # Right flank : AGCGTTGGCGACTTCTAGATGGTGACGTAATGGATTTTAATGAGACTCCATATGATATATGAAATAAGCTAAATGACCTTGTGATGAAACGGGCACAACGTCATTTAGCTTGATTTGCCGATATAAACAATGATTCTTCATATGATATAATCGGAATCCCGATTTGTTAGTTGATAGCCAATGTTGTATGAAAGAAATATGACCCAAACGATGAGGAGAATGCGTACGGCAAGCCACCAAACAATCCGTACGGTAAACATGACTACTCGTAGGAGCCACAGAAACATTCGGATGGATAGTTTCAGTAACCCATACAAAATCGCGGCAGTGATCCAAAATACTTTGCTGTACCATGGCAGTCCCGATAATTCCTCCATGAGAATTTACCTCCTAACTAATTTGTTGTGTGAATCTGGTTGTTCCTTAATTCCCGGGCTCTCTTTTTTTGAGTTAGACACTACTTGGTTGTTGATGTGATTAAGGCCAATAAAAGATCCCGT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 358379-358213 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDZF01000005.1 Sulfobacillus thermosulfidooxidans strain ZJ contig13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 358378 30 100.0 41 .............................. GTCACCGCGAGTGAGTTTCACATAGGCCCAGAGACGTGTCG 358307 30 90.0 35 G..C....................C..... CAGAATTTGCTCCGAAAATATATTGCCGTTACAGG 358242 30 96.7 0 ....A......................... | ========== ====== ====== ====== ============================== ========================================= ================== 3 30 95.6 38 ATTTGTAGCCTACCTATGAGGAATTGAAAC # Left flank : AATTACCTCGACGTCACCAGCAAGAATCTTTGGATTGTTTCCCAAAAAAGGCACTATCGCTGTAGGATCCGATGCAGATCTTGTCATATTCGATCCCGAAGGCACTATGCTCTGGAGTGCGAAAACCCATCATATGCGTGTCGATTACAATCCCTATGAGGGACGCGTAACCCAAGGAGAGATACGCTATGTGTATTCTCGCGGAGAGAAAATCGTGGATAACGGCCAATTTTTCGGGAAACCAGGTCGCGGTCAATTTCTCGTCCGAAACCATTTTGTAAAACCTTAAGAAATAATGTGAATCACAGATGTTTACTCTTCCACACCCCCATTTGTTGTCGTCGATCCCCAGTAGCGCAAAAAACCCCGGAGATCGACGACAATCCCAAAAATCCCGAAACCCTTATGCAGCAGAGTTTTCGGGATTTCGTCATTCTAAACTTCCAGTACTTTTCATTAAATCTCCGATTGACAATCCTTTCCTAGAGCCGCAAAATGGG # Right flank : CGAGAGTACGAAGTAAAAAGTTGTAGTGCCGCGTGTAAACTTGCGGGCGGCCGGGTCGTGTTTGCGGGCTCAGGCCCTTTAGGATGCCGAGCGGGCCTGGTCGTGGTCAAATGGTCGCCGCCACGGCTTTAAGCCGCGCCGACGTCCTTGGGACGTCTTGGACGAGGGAGAGGAACACCTTATTCGGGCAGGTGTTGGGGCTCTAGTATGGAGCGAGACAAGAGCGTGCGGTTAAGAGTCCGCTTCCTGTCGTCAGCACGTCAGAACGGCATCATGTTGCAAACATGACGATTCAGGCAAAGTCCCTGCAAGGTTTCGTAAGGTCGTTCATCCACAGTAGGCGCTCAAAGAGGTTCCGGGACTGAAAAGAAATCTATGAGAACAAGAAAGTGAGATAGGAGATCTCTATTTGCAGTATAAAGTGAGACCAATGAATGTCCACGATGCCAATGCGATTGCGCAGTGGCATTATCCTAAACCCTACAGCTTTTACGACTTAC # Questionable array : NO Score: 6.95 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //