Array 1 829749-829242 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWJV01000001.1 Lelliottia amnigena strain UMA3121 UMA3121_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 829748 28 100.0 32 ............................ AAACTCTAAACCTGATGATCTAAATCGGCCCT 829688 28 100.0 32 ............................ CTCACCTGCTCTTTGATTTTACCTTCCATGAC 829628 28 100.0 31 ............................ AGTAAGTAGCAACCTGGAGGCGGGGGAAACC 829569 28 92.9 32 CG.......................... TGGAAAAAAGCGAGCGGTTATCGTCGATTTAG 829509 28 100.0 33 ............................ CTGCAAGAAAACATCCGAAAGCGTTATCTTTGC 829448 28 100.0 32 ............................ TGACTATCAATCGGTTCATGCCATGACTCAGC 829388 28 100.0 32 ............................ TCCCACCCTGCAAAATGAAGTGACCACCGATA 829328 28 92.9 32 .........................CG. CTCGAAGACATTGAAGGATATGGCAGAGCTCT 829268 27 75.0 0 ..........AG...A...A-.G.T... | ========== ====== ====== ====== ============================ ================================= ================== 9 28 95.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGCGTTCGCTTTCATCAGGCGTAAGTGTTCTGCCCGCGCTTTTTCGGCGGGCGACATTGCGCTCGTTGATGCCGGTGACGCGCAGAATGTCCGCCTTAGACATCTCGGTCCATTCATGAATATGATCAAGCACGCTGACGGGCAGACCCTGGTTGAGCATCTCAATCAGTCGAATACCGCGATTGGCTGGCAGACCTGCATATCGCCACAGCGCATTGTCAGCAGGTTGTTGTGCGGGCACCCATGATCTCATAACGCCTCCCGTTTATGACATATGTCATGCTTTATTATAGTCATTTGTCAGCTCTGAGAGTAGCGATCTTGCGCATGAAAATCCTTCTCTCGAAATATCATTTCCCTTTAGTCTCTAACCCTAATTTTTAGTTCAAATTTAGGTTATTGATTTATAAGGTAAATAATTAATAAGTAAAAAAAGGGTCATGAACGGTTAAAGATGCTTTTTTGTATAAAAAACAGCGCAGTGGGGTGATAATCTGTC # Right flank : TCGCCAACATTGCGCATTTCGCACTGAGCTTAATTGTCCACACGCGCTCATTCACTGCTGCTGCGATATAGGTATCAATAACAATCCAGAAATACAAAAAATAAGGCCGGGGATATCCCGGCCTTATTTATATCTGTACGCCTTCAGCGGCGAAATTAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGGATACGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCGGTGACCACGTGACCGTTTTCCAGTTCTACGCGAAACATGGTGTTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTAAAACGCAACAAAACAGTTTCGGCGCATTGCCCAGTCG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 841084-839674 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWJV01000001.1 Lelliottia amnigena strain UMA3121 UMA3121_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 841083 28 100.0 32 ............................ TGCAAACATCGCCATTAACCGCTCTGTTATCT 841023 28 100.0 32 ............................ TCGCCGGTATCAGCCAGAAAAGAGAGCGTGAC 840963 28 100.0 32 ............................ AGAATCAAAGGCTTGCATTCCAGCAGCCCATT 840903 28 100.0 32 ............................ CTGCGTGGCGGCGCGCACTGCTCGGGCGATGC 840843 28 100.0 32 ............................ ATGAAGGTATCAGCGCCACCTTCAGCGGCGCT 840783 28 100.0 32 ............................ TGGAGAAGTGCACTATGATGTCTCGCCGTTCT 840723 28 100.0 32 ............................ AGAAGGTACTAACAGGTAAATCATAGAATAGG 840663 28 100.0 33 ............................ CTGATACGCAAACTTCTCGCGATTATCATATTG 840602 28 100.0 32 ............................ AGATGCGGCGCCCGGTTCTTTGCGTGGGCATT 840542 28 96.4 32 ............G............... GCTTTTGCATCCCTCGCGGCAATCATATTCAT 840482 28 100.0 32 ............................ TTTAACATTGTTAAACCAGAAGAGTTTGTATC 840422 28 100.0 32 ............................ TGATACGCAAACATCACGTGATTATCATATTG 840362 28 100.0 32 ............................ GTCTGCGCCCTCCTGCGTCAGCAGGTTATAAC 840302 28 100.0 32 ............................ AAGGCTTAGATCGAGGCATACCGCCACAAAAA 840242 28 100.0 32 ............................ TTTGAAGGCGGTGACGCAATATACAGGGCGGG 840182 28 100.0 33 ............................ ATCGACGTCATATCCAGACGCCCAGACGTTAGT 840121 28 96.4 32 ............G............... GGGCTGTCGTCGCCGAACTGAGCTCGGGCGAT 840061 28 96.4 32 ............G............... GTTAACGAACGAGACCGGCAGCGCGACCAGCT 840001 28 96.4 32 ............G............... GTGCTCGGCAACAATCCCGACTAAATCGACGA 839941 28 96.4 32 ............G............... AGTTTGAGCCGTCTCCTTCTTTCTTGTAAGAA 839881 28 92.9 32 ............G.............G. TGTTAAAGCACCCACAGCAAAACCAATAGAAT 839821 28 96.4 32 ............G............... ACACCAAAATAACCACTAATCTGCATCGCAGA 839761 28 100.0 32 ............................ TTGCAGAGTCTCAGAGCAAGCTAGCGCAGATG 839701 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTGCTCGACTGCCACTCTCTTTCGCAAATGCAACCTGTATGTCGATGCCTTACTGCTTATCTGGACACCCTTCAACGCGAGGTGGCAAAATCGATGACCGATTTTTACGTTGTCGAAAGCGCCGATGACCAGCCTCTGAAGCGAAAAGAGTGGCTTTTAGAAGATACCGAAACGCTTTGTGATTACAGCCGCGCGTTAAATCACGTTTTGCAGATTTCACACGTTGATGGCGAGATGCGCCCTCATCTTACCGGCCTGCTGCACGACATCACGCACGCGATTGCTGACGATCTCAATGGCTCTCAGATCCAGGTCACTAACCGTTCCCTCTAACCGAACCGGGCCGGGATAGTTCCCGGCACCATGCAAAACCCTTTTTTCAGATGATTTGTAACGTATTGATTTTATTACACGTAAATAACCACTCAGAAAAAAGGGTAGAAATGGCTGAATGTTGATTATTTTGCGTCGCAACAATAAGATAGCGCCGTAACACTTTA # Right flank : GCGCTTAAGCCGCGCCGCTGAACGTGAAAGACGTTAACTGCCGCTCAGGCAGCCACCCGTCATCAAATAAACACTCCACCAGTCACTGACGCCTTCCCCTGCATATCACTCGCAACGATGTCTCTTCTCACGGAAATATCGCGACATCAGAATGAATAACACCGCGTCATGGTTAAATAATACAAATAAATAATCTTAAAAAACGCACATAATTAAATTTATTGCTCTTGTGAATAATGTCTGAAAATAAACGGGAATTTAATCGTGTATTAGTCCTATTTATTTTGCGGTTTGATATTCATCACATTTAATGTGGCCGACTGTCTACTAACATACTTGACTAAATATCGCTGTTGAAAAAGGTTTTTTAATGCCTGCTAATTTTGTCATGCCTTCCGATCTTAAAACGATTTTGCATTCGAAACGGGCCAATATTTATTATCTCGAGAAATGCCGTGTACAGGTTAATGGCGGCCGGGTGGAATATATCACCCAGGAAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 861468-860539 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWJV01000001.1 Lelliottia amnigena strain UMA3121 UMA3121_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 861467 28 100.0 33 ............................ CTCTCTGCTAATTTATTCGTCGATGCGCTCGGA 861406 28 100.0 32 ............................ TGTACGGCAACCCCATGGAATTTGTTATTGAA 861346 28 100.0 32 ............................ AGATGTAGCCAATATCTTCATCGCTGATACCA 861286 28 100.0 32 ............................ CTTATCTGTGGCAGCGTACGGTTCATCTTCTA 861226 28 100.0 32 ............................ TCGCGACGTTGACCATCTCCCGATAACAGGCA 861166 28 100.0 32 ............................ AGACTGATGCTATTTCCAAATACGACCGCGCG 861106 28 100.0 32 ............................ GCGTATCTGCGCTGGGTTGCATCGTCTGTAAA 861046 28 100.0 32 ............................ CTCTAGTCGAACTCTTCTTCAAGAACCTTCAC 860986 28 100.0 32 ............................ CGAAGTTGCGAGACATTCGGACGCGAGAAACT 860926 28 100.0 32 ............................ TGCTCCGGCTGAATTTATAGCTGCTGTTATAG 860866 28 100.0 32 ............................ TTTGCAAAATGGACGAGGCGGGCGGCTTGTCT 860806 28 100.0 32 ............................ CTCCAGCGCCGGTAGTGCCTGATGAACTTCTC 860746 28 100.0 32 ............................ TGTCACAGATGCAGCAATGCACCTGCGACTTT 860686 28 92.9 32 ..........T.........A....... TGCATGGGTTGTGGTACGGCGGGCTGACGCTC 860626 28 100.0 32 ............................ CTGGTGAGTTCTTTCGCGGCAAAGGGCAAAGG 860566 28 67.9 0 ............G.......GAATACCC | ========== ====== ====== ====== ============================ ================================= ================== 16 28 97.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCATTAGCGGCATGCTGGTGGCAAAAGGATTACCAGGGTTTATCGCCTATGGTGTGTTGATTGGCGAAGTGGTTGCGCCTGTGCTGATTGTGTTGGGCATTCTGACGCGTCCGGCAGCGCTGGTGCTGGCCTTCACGATGATTGTCGCCTGGCTGATGGTCGGCACCGGCAAAACGTTCGCGCTGGACGCAGTAGGCGCATGGGCGATCGAAAGTCTGGTCTATTTCTTTATCGGCGCGTTAGCCGTGGCGTTTTTAGGTGCTGGGCGTTATGCCTTAGCCAAAGACCCGGCCTGGAAGTAAGATTTTCTCCGGGCGGCGCGAGCTTATGTCGAGATAAAAACCAGCATCTGCAAAAAGGGTTCTTCGGAACCCTTTTTTGTGGGTTCTGTTTAACTCATTGATATTGTTGAGTGGAATGAGTTTCCAGGAAAAAAGGGTTTGCCGCGCTGGAGTCGAGTTTCACTTTAAGTATCAAAAGGAAAGGTGTAGATTGCTTCA # Right flank : GCAGAGGCGGGTATTTAGTATTTCAAATTAAAGGGCTACAGTGTAATCAAGGTTGCCGATCTGACTTTCCATTTTCCATCCTCGCGAACAAGGCAATCCGCGACGACATGTTTTTTGTCCTTACCAAATGCAATGTAGATATTCATGCACACCGCATCAAAATCAGACGAGATTACACTCACGTGATCCCAGTCCTCCTCCCAATCCTGGGCTTTGATAAACATATCTGAATCTGGCATATCTTTATCATTGCTGTCGCCCGAATAGAGAGCTTTTATCGCTTCGATGGATTTTTTTGACACGTAAGGGGTAAGAGTGTCGGGCTTAAGAAGCGGGGATTTATCCTGCTTCAGGGCGTCTATATACCAGCGATTGAAATTCAATGCGGCAATTTGTGGCGTTACCGCAAGTGGGCTGGCATAAATCGGCGAGCATAATGATAAAAGGAAAAACATCCAGGCTTTCATATTTTAACGCCTGTATATTTCAAAAGATGGACG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //