Array 1 190932-190127 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCXH02000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain HIY0068 NODE_2_length_575190_cov_17.886729, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 190931 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 190870 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 190809 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 190748 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 190687 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 190625 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 190522 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 190461 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 190400 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 190339 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 190278 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 190217 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 190156 29 96.6 0 A............................ | A [190129] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 209534-207064 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCXH02000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain HIY0068 NODE_2_length_575190_cov_17.886729, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 209533 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 209472 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 209411 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 209350 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 209289 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 209228 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 209167 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 209106 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 209045 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 208984 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 208923 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 208862 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 208801 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 208740 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 208679 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 208618 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 208557 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 208496 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 208435 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 208374 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 208313 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 208252 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 208191 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 208130 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 208069 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 208007 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 207946 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 207885 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 207824 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 207763 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 207702 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 207641 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 207579 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 207518 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 207457 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 207396 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 207335 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 207274 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 207213 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 207152 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 207091 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 41 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //