Array 1 36679-34784 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFUL010000013.1 Riemerella anatipestifer strain 20190515J6-L NODE_13_length_45152_cov_261.675075, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 36678 47 100.0 30 ............................................... ACACTGGACAAGCATGAAGTATGGCACCTT 36601 47 100.0 30 ............................................... AAGTACAATCAAGATGCATCTATATCATTG 36524 47 100.0 30 ............................................... CAAGCAGAAGCAAAACAGCTCTACTCCAGA 36447 47 100.0 30 ............................................... CAAAAACTCCTGCATGGAAATTCAGAGAAA 36370 47 100.0 30 ............................................... AGAAAGCACTGCTAGTAGCAGGACGGGGCT 36293 47 100.0 30 ............................................... TGGTTTCGACTTCTTCGCACGCTGCTCGAT 36216 47 100.0 30 ............................................... GAACAAAATGGAAGTAATGATGTCCACCCA 36139 47 100.0 30 ............................................... AAGGGCAAATAAAAAAATACAAGACTTCAC 36062 47 100.0 30 ............................................... AATGAGTTCAAAGTAAAGGAAGATACAGCT 35985 47 100.0 30 ............................................... ACGAAAGCCCTCAAATTTACATATTAGTTC 35908 47 100.0 30 ............................................... TTTGAAGCATAAGGGAGCAGACGATAAAAT 35831 47 100.0 30 ............................................... GGACGTATGGTACTTGGAAAGAGGGTACTT 35754 47 100.0 30 ............................................... CACCAACATGTCAGACGCACTCAAATATTT 35677 47 100.0 30 ............................................... TAACATCAATAAGCTCTTCACCACGCCCAA 35600 47 100.0 30 ............................................... AATCGGGCTTTGCCCCAGTAGCACAGGCGC 35523 47 100.0 30 ............................................... TGTCGTTCGGGTTTTACGACTAAGACTTTG 35446 47 100.0 30 ............................................... TGTTTTAAAAAGTCATTAAAAAAAAGGCTT 35369 47 100.0 30 ............................................... AACCAAGCTACTTTTTTGCCTGAATATTGG 35292 47 100.0 30 ............................................... CTTTGGGTACGGTAAGTTCTATGCTTCAAA 35215 47 100.0 30 ............................................... AAGCAGATAACGGAAGATTTCAACGAGGGT 35138 47 100.0 30 ............................................... TAGAGCAGGTTTTCATTTGTATTACTATCT 35061 47 100.0 30 ............................................... TAACCCACTCCTCTTCGTATTCTTCATTCT 34984 47 100.0 30 ............................................... TATTTTGTTCTTGCACACATAAAATTTCTG 34907 47 100.0 30 ............................................... ACTACGGAGCTAACTAAATATAAACAGCTC 34830 47 91.5 0 .........T..............G..................T..T | ========== ====== ====== ====== =============================================== ============================== ================== 25 47 99.7 30 GTTGCGAACCATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : ATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGTATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [4.87,4.91 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], // Array 1 10709-12406 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFUL010000021.1 Riemerella anatipestifer strain 20190515J6-L NODE_21_length_20453_cov_265.388545, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================= ================== 10709 36 94.4 30 ...........T.....G.................. CCGAAAAGGGTAAGGCTATGCTATCAGAAA 10775 36 94.4 30 ...........T.....G.................. CATTCTGTAAACATCTTCAACAAAGATAGC 10841 36 94.4 31 ...........T.....G.................. CTAGGCGAGAATGTTTATAAGGAACAAGGTA 10908 35 86.1 79 ................-.....T.T...T...G... TCCGCTGAAACTACAACAAAGCGTGAGCTAACATGAGAGCAGTCCCAACAATTAATCGCTGGATGTTAGGGGTAGCGGA C,A [10930,10940] 11024 35 83.3 81 .......G........-.....TT....T...G... TCCGCTGAAAATACAACAAAGCTCGTGAGCTAAAATGAGAGCAGTCCCAACCGAAAATGCGGTATTAAAAGAAGTACAACA C,A [11049,11056] 11142 35 86.1 81 ................-.....CT....T...G... TCTGCTGAAAACAACAACGAAGCCGTGAGCTAAACTGAGAGCAGTCCCAACTTAAAATGATAGAGGTTATCTACGGCACTA T,A [11167,11174] 11260 35 83.3 80 .....T..........-.....TT....T...G... TCCATTGAAAATACAACAAAGCTGTGAGCTAAACTGAGAGCAGTCCCAACTTCGGCATCTTTCAAAATAGGCTGGAATGT 11377 35 83.3 80 ................-.....T.T...T..A...A CTCCGCTGAAACTACAACGAAGCTGTGAGTAAACTGAGAGCAGTCCCAACCAGATGTAACGACAGGAAAAAAAGAAATAA C [11399] 11493 35 86.1 80 ................-.....TT....T...G... TCCGCTGAAAATACAACGAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACCCTCAAACTTCAACTTGTTGCTGGTAACTC C,A [11518,11525] 11610 35 86.1 80 ................-.....TT....T...G... TCCGCTGAAAATACAACAAAGCTGTGAGCTAAAATGAGAGCAATCCCAACGCATTATCGTACTCTGTAACACGAACGGCA C,A [11635,11642] 11727 35 86.1 80 ................-.....TT....T...G... TCCGCTGAAAATATAACGAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACGATTGTCGTTTTAAGTGTGATACCCACAAG C,A [11752,11759] 11844 36 100.0 30 .................................... TCTTTTTGAGTATTCATGTTAATTTCATTT 11910 36 100.0 30 .................................... AACTCTGCCACACAAGTTGCACAGCTAGAT 11976 36 100.0 30 .................................... TATTCCTACAAAGGATGTTTTGTCCACAGA 12042 36 100.0 30 .................................... ACAGTGCCCAGATCGTTACACCATTCGTGC 12108 36 100.0 29 .................................... TTTACGATGCTGATATACACGCTTATGGT 12173 36 100.0 30 .................................... GAAAACTTTTTTATGAAGCTAAGAAAGCAA 12239 36 100.0 30 .................................... CTTTCAGAGATGGGACAATGGTTTGTGGAA 12305 36 100.0 30 .................................... TGCTGAAATAGAAAGATTAGGTGTTAATGT 12371 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================================================= ================== 20 36 93.2 51 GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC # Left flank : AAGGCACTTATATTAAAATAGACGGCAATGACCCTAAAAATGGTATCGTCTTTAAAAACTTAGACAATCAAAATGAGGTAAAGCTCTCAGCAGAGCATATTGTGCTTAATGAGCCGTCAAGGTTACTCATTCTCGTTCCTACAGATTTAGAAGCAGGGAACTATGAACTCAGCATCACCACGCAAAGCAGTAAAGGCACTACCTTACTGAAAGAACCCCGCACCGAAACACTAAGCACGCCTATTACTATTGTGTAGTGTGTTTTTGGTACTTCTAAATAAAGACCGCCCTTCCTTACATTAAGGAAGGGCAGTCGCTTTATAAGAGGAAGCTACTTCACTGCCTAAGGCGAAGCCTCTTCTCTCGGTAAGACGAAGTCGGTTCCCTCGTACGAGGGAACCGACTTCGTCTGTATTAAGGAAGTGAGGAATTTTCTGTAATAGAATAAATAATATAGCAAAAATCCCTGCTCTGCAGGGATTTTTTTTATGCCCTTAGGT # Right flank : CTGGTACTCCAGTTAGTTTTTCAGCTTCTGCGTTGTGAATACCCTTCAAATGCTGTGCATTATCGTTATGATAGGGTATTGTCTTTTTTGGGGTGCTTGTTTTATCTCGGTGTTTCAAAGAACGCTTTTCTTTACAACGCTCTTAAATCGCGTTGTTCTATTTTTAGGCATTGCCTAATGCTTTTGCTCAACTCCTGATGCAGCTCCTTCATTCTGGTAGCCACCTCTTCGTTTTTTAGTCGGAACTCCGCCTCGGTGCTGTTTTGTTCTGCAAGTAGGAGCTTATAAACGATACTACGGTACTCAAAAAACTTATCAGCAATTTCCTTAGACAAGAAGAGCCCACAGCCCTCCCCATAAAATAGTTCTGGGAGTTCCCTTAGAAAGGCTTGGGCATTGGCTCGGCTAATATAATGAATTTTATGCTTTTGCCCTTTGGAAACTTCCCATTTTAAGAGGTTTTTGGGGTTGTCTTGGTCGGTCATATACGCCAGCAGACG # Questionable array : NO Score: 4.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:-1.42, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [28-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //