Array 1 24548-23429 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZA010000027.1 Dendronalium phyllosphericum CENA369 scaffold27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 24547 37 100.0 33 ..................................... TTCTTGAGTGCAAGAACTGGATAAAAGCAAATT 24477 37 100.0 33 ..................................... ATCAAGATAATGCTGATAAGCTATTTCATATAT 24407 37 100.0 33 ..................................... CAGACTGGTATTGATACGGCTAAGGCAACCGTA 24337 37 100.0 38 ..................................... AATTTACTGTCTGAAATTGCAGGGCCATTTGTAGTCAA 24262 37 100.0 38 ..................................... CTATTTCCCTTAACTTCTGATAAATAGTAAATAGTGGT 24187 37 100.0 33 ..................................... CCCTCACTGGATTGAAACCGAGCGCGTCGGCAA 24117 37 100.0 35 ..................................... TAGCTATTTCTAAATCAAGTACTCCACCATTACGA 24045 37 100.0 37 ..................................... GAGCAGATCGCGCTTCAAAGTATTGGCTACTCTACTT 23971 37 100.0 35 ..................................... GGGTTGCCAGCAGTAGCGATCGCTGATGCTAGAAA 23899 37 100.0 34 ..................................... AAAAGTCATGGAAGCTGACAAACTGCGCTATTTT 23828 37 100.0 35 ..................................... CTTTGCTAAGAAATACGACAAACTCTTTACAGAGT 23756 37 100.0 38 ..................................... ACTTTGATAGCTTGGCTGTAGCTATAGTTCATATAATT 23681 37 100.0 37 ..................................... TGATAGCGAAGGAAACGCAAATTTGACTCCAAACAAA 23607 37 100.0 34 ..................................... TCCTTTAAGACTTATTATCCTGAGACAGGTTGGG 23536 37 100.0 34 ..................................... TTACAGTGCGTTTTCCCTTCCAGCGCAGTTCTAG 23465 37 94.6 0 ...........................AT........ | ========== ====== ====== ====== ===================================== ====================================== ================== 16 37 99.7 35 ATTGAAATTTCTTTTACTCCCTATTAGGGATTGAAAC # Left flank : GGTTGTGAAGATATTCCCAACTTACTCGGACGTTAAAAAAAGACGCGAGGACGCGGAGAAGGGGAGGCAGGGAGATGCAATTTGAATAATTATTATTAGCTTAAAATCAAGTCTAAAGCCTGAAATATCGCACTTATCGAGCCATAAAGGAAGCGATTTACTGATTAAACCTGACACTGATAATATTCGCTTTTTCTGTGCGATCGCTGTTTTAGTAAAGTAGGAAGTATCAGTGACGAACCAATACGCGATGATTCTATTTTCTTTGCCAAATGCGCGGATGGGTAGGTGTAGAAAATCGGGCGTTGAGTAAAAATGGCTGCATTCCTTTTAGTACAGGGTTTTGCAGAAAAATTAAATGAAAATCAGCCGCGCGCCTTATCATATCGTAGTTTCAGCGATTTTACTTCAATCAACTGACATTTTATCCTGTTATAATCTAACCATTCGCGAAACTGAACCTCGAAAACTAAATACAGATTAGCTTTCCAGCTCCCGCC # Right flank : TTCGGCGTACCAGCATTTAGCCATTAGGAAGAATGATGTTTAAAGAATTCCGCACATCTTCTAAAGGAGTTTCCCACAACAAATTCCATTCGATACCAAATAGAGGTTTAGCTTGTTTTGCCATTGTCCAGCCTTTGGCGATCGCATCCATGTATGTTGTAGAAAGCTCAATATCGTAAATAACAGCCTTAAGTAAATTTTTAGCAATTAATGCCAGCCAAAAACGAGAAGCGTATAACTGGTTAACATAAAATGCTTCTAATTGGATTTCTCCCAATACATTTGTATTGCATCCAGTGACGATATGCCAAATGTCGTGAGTTTCGGCAATATGCGCGGCAAAAAAATCGTAATCATTCTCTACTGACTTTGCCTGTAAAGGCTGCAAATTATTTGTCAGTAGATGGTTAGCAAAACTATAACCTAAGCTGTTAATTGGCAAGCGATGGAGTTTTTGTAAATCAATATTACCCAATAGCGGGCGCTTTTGAAAAGCTTGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAATTTCTTTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 123530-123855 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZA010000002.1 Dendronalium phyllosphericum CENA369 scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 123530 37 100.0 35 ..................................... ATTTTTGGACATCCCGAAGCAGGAATACCAATAGT 123602 37 100.0 36 ..................................... CACTTTCAGCTTTGCATCTATATATATCCGGTTTCC 123675 37 100.0 34 ..................................... ATTAGTACCAAAATCACCAATTATATCAAAGGGA 123746 37 100.0 36 ..................................... TAGCGGAAATATCGACAGATGACTCGTGAACTAGAG 123819 37 91.9 0 .................................GTG. | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 98.4 36 GTTGAAATTTCATTAACTCCCTATGAGGGATTGAAAC # Left flank : ACATTGTCGGATTCGATCCATTTTTTGGATACTTGCATTGCGAACGTTATGGTAGACCATCATTGGCATTAGACTTAATGGAAGAATTCCGTCCCTTAGTAGTAGATGCAGTAGTATTGTCTACATTGAATAAGCAGCTGTTGACAAAAGCAGATTTTCTCACAGAACCTTTGAGTGGAGCAGTTTCCTTAACTTCAGAAGGACGAAAAAGATTTTTACAGCAATACTCTCAAAAGAAACAATCTGAGTTTAAACATCCCGTACTAGGACGCAAATGTACTTACCAAGAAGCGTTTGAATTACAAGCTCGATTATTAGCCAAATACTTAATGGGTGAAACTGAAAAATATCCACCATTGGTTTTGAAGTAGGAACTGGAGAAGAAAACGACCAATGAATGTAATTGTTTCTTATGACATTTCAGAGGATAAACGCCGCACTAAAATTCACAAAGTCCTTAAATCCTATGGACAGTGGGTACAGTATAGTGTGTTTGAATG # Right flank : GACTATCGGTTGCACGACGAGAGTGAGTATCTCAGAAATACTCCTGGCGAGTGTCAATGCCAGTACCCGCCCAAAGGGGCATTACGGGTAACTGTAATGTCTCATAGCTAGAGGGTAAAATGCGCGACATCAGCAAGCCGCATAGTTAGGTGAAGTGCTAGGGTAAAACTAGACAGGGTTAACAGATGTGAATCCTTGCAGAGGCATCGTGAAGAGGAATTACCGAAAACGGCTGAGACGGTAAAAGGGATAAAGTGATTCTGCCCAATCCTCAGAATCAGGGACACCAGAAACCCCCGGTGTATAG # Questionable array : NO Score: 8.98 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCATTAACTCCCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 52278-51812 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZA010000234.1 Dendronalium phyllosphericum CENA369 scaffold335, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 52277 38 100.0 33 ...................................... GGTTTCTTTTAGCGTTACTATTGTCACCGTTTT 52206 38 100.0 31 ...................................... AGAAAAGATGGCTGTGATTTGTTTTGGGCTG 52137 38 100.0 35 ...................................... TTAGGGTCGATCAAAGACAACCCAACAGGAGGAGT 52064 38 100.0 36 ...................................... AATAGTAATTGCCCAATACCAGTTAAATCGCTCTTG 51990 38 97.4 32 .....................................A ACACCGTTAGGATTTATCTGTATCATTGGGGA 51920 38 100.0 33 ...................................... CTCTTTTTCGGAGATATGCTTTTTGCTATTAAA 51849 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ==================================== ================== 7 38 99.6 34 GTTGAAATTTCATTAACTCCCTATGAGGGATTGAAACT # Left flank : ACAGGAAAACATTTGTTGAAATTTAATTGGTTTAAGATTAGACGGCATCCAATGGTTAAGGGTGCTTATTCTCCCGATGACCCACAGCTAACAGCCTATTGGGAAAATCGGCAGAATATTAAATTCAAAAGTCTAATTCCTAGTTATCAAAAGCTTGCCCAAAAACAGGGTTTTATCTGTCCAGTATGTGGAGAATCATTATTCAATGATGAACCCATACAAAAACACCATAAAATACCTTTTTGTGATGGGGGTAACGAAAGTTACGCTAATTTAGAACTAGTGCATTATTACTGTCATCAACAAATACATTCTCATGCACAGAATCACCTTTCTGAAATTGAGAATGAATTGAGTCCTTGGTAGCTCTAGGATTTGCTAAAGCCGGATGCAGGGTGAACTTGCTTGTCCGGTTTGTCGGGGGGAAAGGGATAGCAATATCCCTGCCCTACCCAGTAAACCTGGATCTAGCAAGTGGGAGTACCCTTTATCTGCTAGAT # Right flank : TTAACCCAGGTTGCCCCGAATGGATTTAATCAAGTTGAAAGTCAAGCATGTGACCACAAATTGAGCGTCAGTTCATACTTAGGGTCATTTTGGCGTAGCCATTGATACTATTTTTTGTAGTCTCATGAACTATGTGATTAGTTGTACCGTTGGTATTTGAAACTCTTATGATAAAAGCTAAGATTCAAGTTGGTGAGTAAACTCACATTCGCTCAACCCTATATGCAATAAACAATGCCAAGTAAGGTAATCAACGTCAAAGAGTACACCGTCAGAGCACATCAGCGGCAGATTCATACTCGCGTATTCAACTTCGTCTGTAAAGAGTGCGATCGCCCGACTCAACGCGAGACTTATGGCCCAAGACCACTGTACTGCGAGCAATGCCGTGCGCCACAACCACCGAATAAATCCTCTGCTCCTAAAAAGAAAGCTTTACCTAGACCAATGACCTACAAAAGTGATGTGGACTTGAATAAATAGTCTCTGAAGTTTCATAG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCATTAACTCCCTATGAGGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 38661-39135 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZA010000276.1 Dendronalium phyllosphericum CENA369 scaffold389, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 38661 37 100.0 36 ..................................... AACCGCCCCAACCATCTGTATCTGAGCCGCAGATGA 38734 37 100.0 34 ..................................... TGGAATTCGGATGAAACCAAAGTGCTAAAAAAAT 38805 37 100.0 37 ..................................... GGAAGATTTGTAAATATATTCTCGTCGCCATGCTGGG 38879 37 100.0 38 ..................................... ATTTGATTTTGCATTGCAGCGATCGCTGGGGATGTTCG 38954 37 100.0 37 ..................................... AATGAGAACTCAACCTTTCTAAACTTGCTAACTTAAA 39028 37 100.0 34 ..................................... TTATAGATTTGAAAATAGGCGGCACTATTTCTGG 39099 37 91.9 0 ........................A..........GT | ========== ====== ====== ====== ===================================== ====================================== ================== 7 37 98.8 36 CTTTCCAAAGCCATTACGTTAGGTGGTGGGTTGAAAG # Left flank : CTACCTGTGCGTTCATCTAAATGTTTGTTAGCAGTAATTGTTTGGGTAAGTAAATGCTGCTTTTAGATGAGAAAGGACTCGCACCGAGACGCATGGGAAGTATAAGGTGTTAGGGTTCCAAACAGCCCAGAGCCTTAGCTCTTGACATCAAACTTTTTTAGCTTGGTGTTACGTGCCAGAGCGGCCTGTACTACTGAAATCTAAGATTTTGGTTTTACGAGGAAGATCATTACCTCTTACTTTACAACAAAGTAAGGGTACGGGTATACCGTTATGGTGGCTATCGAACAAACTACCCCCTAATTTTTATTTTTGGCAAGCCAAAGCGGGGGCAAAATCCCTGGGGTGCTGCCAAATACCTAAAACTATTGTTTGCACTGGGTATTACTGTTTTAGTCATGAATAAAATTTTATTCATTGACCGTAGAAAATAGTAGTTAAAGAAGGCGTGCCATATTTGCCTTCAAAAACCATTGTTGGCAAGAGTTTTCAGTGGTAGG # Right flank : TTCTTCTTGTTGAAGACACTACTTTAGTTATATAATTCTGTATTAGGGTGGTTTGAAAGGAGCGCTGCGATCGCACGTAAAACGCAGCTATTTTATAGTAATGGAGCCTCTGCTTGGATGAAAACAGCAAAAGGAGAGGTAGTAGATTTTTATAATTAGACTCCAAAATAAAGTACTTTATAGCTAGTCTTGTAATTCAAGAAGCTTGGGCTTTCTGTCACAACACAAATTAAATCAGAGAACATATATTTTGACGAGTTTAATAGGCTAATTTTGGACAATAATTCTTTAAAACTGGTTTCAACTCTGGACAATAATTCTTTAAAACTGGATTGATCGCTGTAAGTCAGGAAAATACGTAACTTATGTTCCTTATCTTCGTAAAATTGGACAATAATTCTTTAAAAGTGACAATAATTATTTAATGTACATATGGAGAATAGGGAAGTCGAATCCCTGACCTCTGCGGTGCGATCGCAGCGCTCTACCAGCTGAGCTAA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAAAGCCATTACGTTAGGTGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.70,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 101776-102820 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZA010000004.1 Dendronalium phyllosphericum CENA369 scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 101776 37 100.0 32 ..................................... CAGCAATCAACTGCAAAGCTTTATCATAAGTA 101845 37 100.0 35 ..................................... ACCCCAAGGGAAACTTTCATACGCAGCGTTCATCC 101917 37 100.0 36 ..................................... TATTCAATCGGCAGCTGCAACGGATTGAAAAGCCTG 101990 37 100.0 33 ..................................... GGCGATTTCAAAAACCTGTCGCGGATTAGACAT 102060 37 100.0 34 ..................................... CCTCAAGTTGGACTTCCACCTGTCCACGTGGACA 102131 37 100.0 40 ..................................... TTTAACAGCAGTGAAAGAACCAGCAGCAGCTTTAAAGAAT 102208 37 100.0 35 ..................................... TTTAAATAATTCACCTGGTGGTACTTCCAACCATC 102280 37 100.0 35 ..................................... TCTTTACAAGATAATGCTCGAAGAAATTTTGAAAG 102352 37 100.0 34 ..................................... CTACCTTTTTTGCATCTGTATTTACTGATTGTAA 102423 37 100.0 37 ..................................... TGCAAAGATGGTAGGCAATCGCATGTTGTTTGGAGTG 102497 37 100.0 36 ..................................... GAGAAGGGCATTTACTTCAATGTGACCAATAGAGAC 102570 37 100.0 36 ..................................... TATTTCTACTCTTGCGTATCCCTCTGATGGACCTAT 102643 37 100.0 32 ..................................... GTGCATCTTCTGGGACGACAGCGAGGAACCAC 102712 37 100.0 35 ..................................... AGTAAACAAACAATCTGATTGTAGTTTTGAAGATG 102784 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 15 37 100.0 35 GTTGAAATTTCACTTACTCCCTATTAGGGATTGAAAC # Left flank : AGACAGGTGGATTGTCGCAACTTTTGAAGATGCAGAAGTTGTAGCCGCAGCTAAAGTTTACGAACAACGCAAGCAACAAAGTCAAGGGTTACATTTTCTGTTGGTACAGCCTGATGATTCAGGAATGACTTACAGTGGCTTTTGGCTGTTGCAGGCAGAAAAGTAATAAGCTGAAAAATATCTAAATTGCATAATCTAATTAAATGAAACTATAGTGGTGTCGGCTTCTTGCCCACCCTAGCTATGCAAGTTATACCAATTCGTAATTCGTACAGGCGCGGATGGGTAGCTGTTTGAAATCAAATTTTGGTAAATGAGCTTGAAACCCTTTTAACATCAGGCTTGCGAACAAAATATATCTTTTAGTTGCCGCGCACCTTATCTAGAAAGGGTTTTAGCTATTTGCTGATTACTGGGTAACAATTTTTTATGCTACTATTACATCATTCGCGCAACAGAACCTTGAAAATCCAATATAGATTGTATTCCAGGCGACCGCA # Right flank : CAATGCAGCGTATGATTAAGCGATCGCTAATGCCGTTGAAATTTCACTGCAAAAAATCTGCCAATCTCATTAAAAGATTAGCAGTTAGGGTCTTTTGTAGAATCGGAGCGGCGGGATTCGAACCCACGACCTCCACTACCCCAAAGTGGCGCGCTACCAAGCTGCGCTACGCCCCGGTCAGAATTTCTATCATATTACAAAACATTGGGATAATCAAGAGGCAGATTTAAAAAACTTTGAGCATCCCACTAGCTTGCAATAAACCCGGTACAGCAGAAGCATACCATTGACCTTCTACACACCGTCCTTTATTGAGGATAAAGTGCAGATTGTATTCATGGGGATAACCTTCTACTTCCATCCATAATAAATCGCTTTCAGCTTCACAGGCGATTTTCTCTTCGTCCATCAATTCTTCTGTGAGTTGCTTCATGGTGTCTGCTAACTGTGCCAGTAACCGACAAAAATCATCTAATTCGGCTTCTGTTAACTCAATTGCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 23418-23814 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZA010000317.1 Dendronalium phyllosphericum CENA369 scaffold440, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 23418 35 100.0 37 ................................... AGCAAAATGGTGTTGGGAGAAACTCTTTCGCTTGAAA 23490 35 100.0 37 ................................... GACAAACGCAGATATCCCAGTGACTGGGACACAATCA 23562 35 100.0 36 ................................... ATATTTACTAAAAGCTGCTAGCACTTCACTATTAAA 23633 35 97.1 35 ......................G............ CCTGACCACAATAGAAGCGATGTGACTGACATTCG 23703 35 94.3 39 ................C..G............... TAGCTCTATGTTCCTTGTAAAGTCCTAAGTGAAAATCTG 23777 35 85.7 0 .................ATG.....T........A | ATC [23789] ========== ====== ====== ====== =================================== ======================================= ================== 6 35 96.2 37 TGCTTCAACATTAGATGCCATTAGGCGTTGAGCAG # Left flank : AGGTGAAAGTCGGGATTTAGTAAATGATATTACCCTCTTACCAAAAAACTACTATGCAGAATCAATGCGGTGGTTAATCAAGGATGAACATGGGTTGCTAACTTTACCTTATTGGATAGACCACGTAGGTTCGCGAGGAACGCGATGGCTGCGTTACGAGCTTCAGGAATGCCAAGTATTGCAACCACCTGAATTATCTTGGACTTCAGTTCAAAGTAATTAGGGTTATTATTTAATTTTGCAAGTACCTTTGCTTGGGAAATCTAAATACCATGAGTAATAGTCTTGTCTTCTTATTTGACAAGCCTTTTAGGGATTTTATATGCATCCAAGATGCTTGCGATTTCCTAGAATACTCTCAATACAAGAGTTGAGGGCTTTAACAACTTTCTTTGTGCTATCAATAGCTATTAATTTTTGCAACTAAACTAATCTTCAGTGATAGATGCTTGTAAAATTGAAGTAGAGCTTAGGGAAGTCAACAAGTTTGGCGATCGCTA # Right flank : AAAAGATAGGCTCAAGTATTTGCGTTTAATATAAATACGTTTTCACTGAGTACAAAACTAGTCATCTTGAGTCTCGTCTTTCCGAGAAATTTTAGCGATAATTTTTTCCCATTCCTCAATTTGCTTCTGTATTTGTAATTTGCGATCGCTCAAATCTTGACTATCATCAACAGACACATCCTGAGTGCTTAACCGTTCACGGTAAAGAGCAATCAGTTCGGTTAAGGCTTTTTTATTACTTGCTGATCCTCCTGGGTCAGAGAACTCGCATTGACCGGAATCAGGTTTCTCCCAATTCTCTCCACCAACTCAGACCGACTTAAATCTATGCTGTCGGCAATCGCATCTAATCCTTCAATCCCGGTAGGAGTTAGGGCTAGGTTAACTCGTTTCTTCACCTCATCGTACAGTTCTGGTATGTCTTTTTGACCTTTTTGCCCTTTCTTACCCATTGCCGTCTAGTTTTTACATTCCTCCCAATCATAGTAAACACATTCAGC # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGCTTCAACATTAGATGCCATTAGGCGTTGAGCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 26583-27723 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZA010000057.1 Dendronalium phyllosphericum CENA369 scaffold57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 26583 35 100.0 38 ................................... ATCGGCAAAGCTGAAAGAACGTGGACGGCTGTACACCG 26656 35 100.0 38 ................................... AAGTCCTATGGATACTTAGGAAAGCTTATAAGTCTCCA 26729 35 100.0 40 ................................... ACGAAATTCCCACCGCGCTGGTTGATCTTCGCCACCATAG 26804 35 100.0 37 ................................... AAGGCTATGTTCATCCAAAAGATGGGTGAACGTGGCA 26876 35 100.0 39 ................................... TGTACAGCATACCATACGCCACTAGCAGCTGCTAAGGCA 26950 35 100.0 39 ................................... AACCTGTAATAGCCATGAACTTCGCCGTTTTTTTGAAGA 27024 35 100.0 38 ................................... AATTGCAGAAAGACCAGCAAAAGCAGACCAATCATGAG 27097 35 100.0 41 ................................... TACTTGGCAAACATTCTGAGCATGTGCCTAGTGCCGCCAAA 27173 35 100.0 38 ................................... TTTAAGAGTTTTGCCCAAACGTCCCAGCTTTCCAAGAC 27246 35 100.0 42 ................................... AATGGTAGTTCAAAACAAAATCCTTTGAAATGAAACTAAATA 27323 35 100.0 42 ................................... CCTTTAGAATTGTATAATCGGAAAACATTTCGTCTGTTAAAA 27400 35 100.0 39 ................................... TTTTGAAGGCCGTGGGAATTTTTGTACCTTACCAGAAAT 27474 35 100.0 35 ................................... TTCCAAGTCATCTGTGATTCTGGGGGCAATCTGAA 27544 35 100.0 36 ................................... TCGAAGTAATCATTGAGTAAAACGACGCTTCCCCAT 27615 35 100.0 39 ................................... CGTTAATACTCGCTGGCCAGCATGATGGTCAGCATTCTG 27689 35 91.4 0 ...............................GTG. | ========== ====== ====== ====== =================================== ========================================== ================== 16 35 99.5 39 GTTTTAAATTCACTTCCCCTCACGGGGATGGAAAC # Left flank : CTACTCCCTACTATCCTTTGTCTCTGGATGAAAGCTCAAGATGACCCTCCTGAATTCTGCCGTCTTGCCATCCATAAAGCACTAGATAAAGACAGGGGAAAATAGACCATCGAAATTATAGATCCTAAGCTGAGAGACAGTAATAATTTCTGTATCAAAAACTTGACCAAAAAAAACAAAGCATTTTACTCTTTTGGAAAGTGTATTGAAATTCATCAATGCCATCTCTCCAGAACCTTGAAAATTAAATTCCGCGTTTCAAATTGAAGCTAAAAGTGTTTCTTTTTACCTTTCACACGCAAATTTTTCGCGGGGGTAGGGCGATCGCGGAAATGCTCATTCTTTCGTTGACCCCCGCGAATCGCTTGTGGTGCAAAGGTTTGAGTAGGGTATACCTGTTGCTCATTGTCAATAATTTAGGCTTATTGACAGGTAAATTAGACCCCCCGCTAAAATGACCCCTTCAAACCTAATTATAGTAAGGGTTCTAAAAGGGTAGG # Right flank : GACTATCGGTTGCACGACGAGAGTGAGTATCTCAGAAATACTCCTGGCGAGTGTCAATGCCAGTACCCGCCCAAAGGGGCATTACGGGTAACTGTAATGTCTCATAGCTAGAGGGTAAAATGCGCGACATCAGCAAGCCGCATAGTTAGGTGAAGTGCTAGGGTAAAACTAGACAGGGTTAACAGATGTGAATCCTTGCAGAGGCATCGTGAAGAGGAATTACCGAAAACGGCTGAGACGGTAAAAGGGGTAAAGTGATTCTGCCCAATCCTCAGAATCAGGGACACCAGAAACCCCCGGTGTATAGAGGGAACCCAAGCTAGTTGTATCTTTCGCGTGTGATACGTAGGAACCCCAATGGGGTCTTTTGAAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAAATTCACTTCCCCTCACGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 12080-10681 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZA010000048.1 Dendronalium phyllosphericum CENA369 scaffold48, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 12079 37 100.0 34 ..................................... GGACTTGGAGAAGGCGATGGACTTGGAGAAGGCG 12008 37 100.0 34 ..................................... AGACTTGCTGACAGGAATACGAACAACTTTTGTA 11937 37 100.0 33 ..................................... GCACTCAGTTGAAGCAATGGTTTTGATATCTGG 11867 37 100.0 36 ..................................... AGCAGGGGGCATGTATCCAGGCCCGTACAACCAATC 11794 37 100.0 34 ..................................... AAGTGAACGCATTCTAGATATAGATGTCGGCGTT 11723 37 100.0 35 ..................................... GCAAGCCGCAGCAAATCGGCCCAAATACATCAATT 11651 37 100.0 37 ..................................... TACGATACTAAATACCGAGAATTGCTGAGGCTTGAGA 11577 37 100.0 33 ..................................... TAATCCGGATACAGATGGAATAGCTCTATAAAA 11507 37 100.0 36 ..................................... GGTTCCCCAAACTTGGATGTATTCCGCAACTCCGTT 11434 37 100.0 35 ..................................... TTTGACTTCTTCTCCTTTTAGTTTTTTGTTTTCTG 11362 37 100.0 35 ..................................... ACTTTGCCGGACTTCGACGGGACAGAGATAACCTA 11290 37 100.0 37 ..................................... AACCGCAGATATCAGAGGAAACGTGTTCCGGTGCCGT 11216 37 100.0 34 ..................................... AATCTGTCTTTCGACTATTATCTTGGGCCTGACA 11145 37 100.0 36 ..................................... CTGTTTATAGCAATGCTGCTAAGACGCGCAACATTA 11072 37 100.0 34 ..................................... ATTAGATTGCTAAGTCCGAATACGATTTGTTAAA 11001 37 100.0 34 ..................................... GTATTCGCGTATCTTCATAGCACCACCGCAACTG 10930 37 100.0 33 ..................................... ACAATTCAACGGCGAGAAAATTATCTCAGATTG 10860 37 100.0 34 ..................................... AGCTAATGATAGACCCATCGAAATTATGAAAAGG 10789 37 97.3 35 ................A.................... CAAGGGTTCGACGACGTAAACCGTGGAGGAAAAAA 10717 37 94.6 0 ................A........C........... | ========== ====== ====== ====== ===================================== ===================================== ================== 20 37 99.6 35 GTTGAAATTTCACTTACTCCCTATTAGGGATTGAAAC # Left flank : CTGCCGTGTTGCCAAAAAACGTGGCAACCTCAGAGTGGTTATCGAAGCTTAGAGGAATTAGGGAGTGGTGAATTACCCACTCCCCAAGTTCTGGGAGACTGAACTAAAAAAGCGATCGCTTCAATTGAAAAAATACTAGAAATGCGGTAAATAAAGGAATATAGCGACTCGCAAGTGAAATTACTGCCAAATGATTTGTGTATGCTTGCTGTTTTGCTCTAGTTGAACGTATTGCTGGTAAAACCTTGATAACAGCAGTATTTTCATTCCTTCAGGCGCGGATGGGTAGCTGTTTGAAATCAAATTTTGGCAAATGAGCTTGAAACCCTTTTAACATCAGGCTTGCGAACAAAATATCTCTTTTAGTAGCCGCGCACCTTGTCTAGAAAGGGTTTTAGCAATTTGCTGATTACTGGGTAACAATTTTTTATGCTATTATTACCTCATTCGCGCAACAGAACCTTGAAAACCCAATATAGATCGTATTCGAGGCGACCGCA # Right flank : ATTCTTCTAATGGATACAGTATTGATTGCTCAAAGCCACCAAGCAATTGGTTATTACTCAGCACTCAGCACTCAGCACTCAGCACTTTGCTATATATTCAAAGATTTTCAACTTGTAGCTGAGTATCTGTATTTTTCCATACCGTAGCAAATTCTTTTTGTACGAGTTGAGCAACCTCATCTTTGCCTTGTGCCTGTAAACTTGCTTGCAAGCCAAATAAAGAACGTCCATTATGAGGATACTTTTCTAAATCGGCCCGAAAAACTTTCTCTGCTTGTGCATAGTCACCCTTAGCTAATAGCACGCCGCCTAAAAATTCTCGTGAGGGAAAGTACCAATCTGGTGGTTCTACATAATCAAGGGCATCTTCTGCTACTACTGCTTGTTGCAGGAAGTCGATCGCAGATTCGTAGTCATGCTTGGTTTTGGCAATTTTACCATCCAAAATTTTTGCCGCGATGTTGAGAATCCGATTAGCAGGACTAAAGCCAATGGTTGCT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 2 30870-30258 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZA010000048.1 Dendronalium phyllosphericum CENA369 scaffold48, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 30869 37 100.0 35 ..................................... TTGGTGAGTGGCTTCTGCCTCTAGGAGGTTCTCGA 30797 37 100.0 35 ..................................... ACCCATAGAGGAAGCCCCTAAGAATGTGTTACCTA 30725 37 100.0 31 ..................................... AAGTTGAAGGAACCTCGATAACTTCTCAAAG 30657 37 100.0 34 ..................................... AGAATCCCTGTGATGGTGTTTGTAGCTCATTTTG 30586 37 100.0 34 ..................................... TTGCCTTGAGCGGTAGCTTCTGGTACGGACAACC 30515 37 100.0 43 ..................................... ATTTGGCGGACACATATCAGTAGGCGATTTAACTATTTTTGGA 30435 37 100.0 33 ..................................... ACGTTGTAATTGGGATTTAATTTTATGTCTTAT 30365 37 91.9 34 ...A............C.........A.......... TCATCCATTTCTTTGACAGCTGCTGCGGCATGTT 30294 37 89.2 0 ...............GC......C........A.... | ========== ====== ====== ====== ===================================== =========================================== ================== 9 37 97.9 35 GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : GCTAACAGCCTATTGGGAAAATCGGCAGAATATTAAATTCAAAAGTCTAATTCCTAGTTATCAAAAGCTTGCCCAAAAACAGGGTTTTATCTGTCCAGTATGTGGAGAATCATTATTCAATGATGAACCCATACAAAAACACCATAAAATACCTTTTTGTGATGGGGGTAACGAAAGTTACGCTAATTTAGAACTAGTGCATTATTACTGTCATCAACAAATACATTCTCATGCACAGAATCACCTTTCTGAAATTGAGAATGAATTGAGTCCTTGGTAGCTCTAGGATTTGCTAAAGCCGGATGCAGGGTGAACTTGCTTGTCCGGTTTGTCGGGGGGAAAGGGATAGCAATATCCCTGCCCTACCCAGTAAACATATTGCCCCATTGTGAGGTTAGCTGTGTAGCTA # Right flank : GTCTAGCTGTTTTTTAATTCGTAGAACTCACATTAAGATTATTCTATCTGAATCACAACCTTACCGAAGTGAGCTGCACTTTTAAAGTAACTATAAGCTTCCCGTGCTTTTGTAAAAGGGAAAACTCTATCTATAACAGGCTGAAGTTGATGTTGAGCGATTGCCTGATTCATTGCCTCAAACATTTCCCGGCTACCTACATAAATTCCCTGGACTGCTAAACTCTTGAAAAGTATGGGCATAGGGTCAATTTCACTTCCTCTACCTGACAATACGCCAATCAAGCTGATTCGTCCCCCAATCCGGACTGCTTGTAGTGATTTGGGAAAAGTTCCCGCACCGCCTACTTCAACTACATGATCTACACCTGTGCGATTAGTCAGTGCATAAACTTGCTTTTCCCAGTCTGGCGTTGTCTTGTAGTTGATGATTTCGTCTGCACCAAGCTGTTTGGCTGTTGCTAATTTTTCATCACTACTAGAAGTGACGATCGCTCTAGC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 2837-4325 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZA010000066.1 Dendronalium phyllosphericum CENA369 scaffold66, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2837 37 100.0 33 ..................................... TTTGCCCACGAGCGATCGCCCTAGCTTTTTTAA 2907 37 100.0 34 ..................................... GAAGTTTTTGAATGGGCCCAACTTTACCAAAGAC 2978 37 100.0 36 ..................................... TTGCATTATTAGAATCTCAAGGGGCATGCGAACTAA 3051 37 100.0 37 ..................................... AGAATTCCTCAATCCAAATCTGAACAAATTGATACAC 3125 37 100.0 35 ..................................... CACTGTCGAACGATCAATGAAGGAAACGATAAAAA 3197 37 100.0 36 ..................................... CTACAGGGTAGATGGCGTGATCGTCTATATTAAAAC 3270 37 100.0 39 ..................................... TTTTAGTATTAGACCATAAGTAAAAAACAAGTAACCGAA 3346 37 100.0 36 ..................................... ATTTTATATAATGAAAGCCCCTTGCGGGGCTATTTC 3419 37 100.0 37 ..................................... TACAATATACGCTCTTTCCTCCAATCCAAGCAACATG 3493 37 100.0 34 ..................................... TATTTAACTCCTTTTACTGAGCGTGAACAGATGG 3564 37 100.0 34 ..................................... CCAGAATTCATAGCGCTCGGTGCGTTCGATGATT 3635 37 100.0 35 ..................................... AACGAGAAAGGAGGGCGATCGCCCTTAAAAATAAT 3707 37 100.0 35 ..................................... CGATTTATCAAATTTTTGAGACATAGTACAATCTA 3779 37 100.0 35 ..................................... GAAAATGGAGAATTTGACGGAAACAAATACAATTG 3851 37 100.0 35 ..................................... GACACATTCAGATCCTACTTGGCGAAGATAAGAGC 3923 37 100.0 39 ..................................... TCATTTAAAAATATGATTGTAACACCCATGTGTCTATAA 3999 37 100.0 34 ..................................... CTCAGGATATTTGCCGGACAACAATGCTTTAAAT 4070 37 100.0 36 ..................................... TAACGATCCTTATATAAGGGCACAATGTACCAGAAT 4143 37 100.0 36 ..................................... TTAAAATACTTGGCTTAGTACTAAGTTGCCGGATTT 4216 37 100.0 36 ..................................... CTGGATAATTCCCTTGTGGCAAAGTCTTCTCTATGG 4289 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 21 37 100.0 36 GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : GAAAAGCGTTAGTTTTAGTCCCAATGCCAAAATCCTAGCTTCGGGCGGTCAGGATGCCACAGTCAAATTGTGGAACTTGGAGAATATAGAACTGCAAACATTAGATATCGATCGATTGTTAACCAAAGCCTGCGATCGCCTGCATGATTATTTAATCACTAACCCCGATATCACAACCGAAGAATATCAACTTTGTTTTGGTAGCTAAATTGCTCTGGTAGACTGAACTATAACAGCTATCGCTTAAAATAACAGCAGTATTTTCATTCCTTCAGGCGCGGATGGGTAGCTGTTTGAAATCAAATTTTGGCAAATGAGCTTGAAACCCTTTTAACATCAGGCTTGCGAACAAAATATCTCTTTTAGTCGCCGCGCACCTTATCTAGAAAGGGTTTTAGCCATTTACTGATTACTGGGTAACAATTTTTTATGCTATCATTACCTCATTCGCGCAACAGAACCTTGAAAACTCAATATAGACTGTATTCCAGGCGACCGCT # Right flank : CGCACTTGTAGCGGGGGACGGATGACGGGAAGTCAAGTTAAAATTTCACTTTGCTGTTTTTTAATTCGTCGAACTCACGTTAATCTTATATGAGATTCATTTAGTCAAATGAGATATGACTAACAAATTTCTACTAAACTTGATTTGCTGGTATTTTGGCGAACAAATTCTCTCCTAAAAAATATAGTATATTGCTGTAGATTTAAGAGGGCGAACGATGGGACTCGAACCCACGGATGGTGGTACCACAAACCACTGCCTTAACCACTTGGCTACGCTCGCCATTCAATATCTTGATTATACAATTTTTTAGAGTAGCAATCAAGAGTTTTTATTCAAGGAACGGACTCAGTTAATTTAGAGTCTTTGGAGTGCGACAATCATAGCATATCACAGTTAGGAAATATGAAAGCTTTGACTATCATGACATATGTGGGAGCAGCAGGACTAGCTGTATGTGGTGTGACAATGGCGAAGACTAATCCCAGTCAGCCTGAGTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 7378-8143 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZA010000094.1 Dendronalium phyllosphericum CENA369 scaffold94, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 7378 37 100.0 38 ..................................... TTGAATCCGAAACAGATTGCTGCTACGAAATTGGCGAA 7453 37 100.0 35 ..................................... TTGGTATATACCAATTATAGGAAAAGGATTTTAAT 7525 37 100.0 35 ..................................... TAAAGATAGTAACGCCGATTTATTTACTCAAGAAG 7597 37 100.0 36 ..................................... AGTTGGTTGGTAAATTTTGAAAAAGAAAAAGGTAAA 7670 37 100.0 32 ..................................... CCAATATCCAGCCATCATCTGTATAAAAGTAA 7739 37 100.0 35 ..................................... AATGCTTTATTTACCATGCGGGGAAAGATAGATTT 7811 37 100.0 33 ..................................... ATTTCAAGAGTATGCAAGACTACTAAAAGATTT 7881 37 100.0 35 ..................................... TAGAAAAGGAGAATCTATTAGTCTTTCCCTTTATT 7953 37 100.0 39 ..................................... AACGCTTCGTAAGCTTCATCACAAATATCTAGTTGTTCG 8029 37 100.0 37 ..................................... ATTTAAAATGAATAACTTTATTAACAAAGCTTGCCTA 8103 37 83.8 0 .......................A...AT.....TTG | AGCC [8126] ========== ====== ====== ====== ===================================== ======================================= ================== 11 37 98.5 36 GTTGAAATTTCACTTACTCCCTATTAGGGATTGAAAC # Left flank : ATTAAGTATTTTTGTAACTCATTTTTTGGTAGCTAATAAAATACATCAGATAACTGCACTGTTGACTACGCATAGATAGCGGAAATTGCCCTGGGAGGCTGAAGTAGAAAAGCGATCGCTTCAATTGAAAAAATACTATAAGTGTGGTAGATAAGGGAATATAGCGACTCGCAAGTGATATTACTGCCAAATGATTTGTGTATGCTTGCTGTTTTGCTCTAGTTGAACGTATTGCTGGTAAAACCTTGATAACAGCAGTATTTTCATTCCTTCAGGCGCGGATGGGTAGCTGTTTGAAATCAAATTTGGGCAAATGAGCTTGAAACCCTTTTAACATCAGGCTTACGAACAAAATATCTCTTTTAGTAGCCGCGCACCTTGTCTAGAAAGGGTTTTAGCCATTTGCTGATTACTGAATAACATTTTTTTATGCTATCATTACCTCATTCGCGCAACAGAACCTTGAAAACCAAATATAGATTGTATTCCAGGCGTTCGCT # Right flank : GATATTAATTTACAACGTTTTTCAAGTAAATGAAGTACACGGGTAGGGGCACTGTTACATTCGTCCTTTGCTGCCCTTGCTCTGTTTGCATCCTGGCTATGGTTAAATCCAAGAATTAAACCACATACGTGCTTTATAACCTTCAGGTGAGAGAGGTAAACCCAAGTAAACAGGAATCCAGAACACAAGAGCAAGTACAATCAGAAAAGAAATTGTGATGCCTAATGCTCGAAGTGGACGATAATAACTGTAAAGGCATCGGTCTACAAACCAAGCGATCGCCAAAAAAGTGAATACTACAGCTGTCATGTAGTGGTAAATAAAAGCGCACCTCGTGACTTTTATCCAAGGTACTAAGTTAGTAGCATAATTTACAACTAAATACAAAGCGATCCATGTATCAACATCCAGCGTTGTCGGTAGAGAAAAACGCTTTTGTTTCACTGAAGGTATTGCCAGTTGTATTACCAGCATACCTATCAAAAATAAGATAGCAGCTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 1096-1573 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZA010000073.1 Dendronalium phyllosphericum CENA369 scaffold73, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1096 37 97.3 35 .........A........................... AATCGACTGGGATGCTAACAGTACGGTTAATCTTG 1168 37 94.6 36 .........A.......T................... TCATTGTTACCGCATTTACCCCAAATTTGAAATCTT 1241 37 94.6 37 .........A...............A........... GAGCTAGACCGAGAGTAAAAACCAAAGTGTGCGTCTA 1315 37 100.0 35 ..................................... GTTCCAGTAATTGTGCGTCTGTTAAAATTGAAAAA 1387 37 94.6 40 ...................T..T.............. TAAGGGGAAACCTCACCCCAAGAAGCAATAAACTCTAGTA 1464 37 100.0 36 ..................................... TTGTCAATGGCAGTTTGAACTTCTGCCGGAACCGTA 1537 37 89.2 0 ........T.............TG............A | ========== ====== ====== ====== ===================================== ======================================== ================== 7 37 95.8 37 GTTTCCAACGCCTATTACCCCGCAAGGGGATTGAAAC # Left flank : CTTTGATTGGTGCTGAGGGTGGGGTGATTATAACTCAGCTTTTGGGCTTTTTGTTGGCAGCACTGGCGATAGAAATTGGTAGTACGGGGATTCGAGAGTTGTTTTTGAAGTAGAATCTCTGTGCGAAACTACATTTTTCTTATCAAGTGTGACAGGTGTATTCGGAGAATTGTCCAGGATTTATACTAACAGCTTAAAATTCTTAATAAGAAAGCTGGAATCAAGGAAATAATTATAGATGGTTGCGAAATTCCTGGACAAGGTAGGCAATGTTTTATGATGGGTTAACTAACTTGATGTTTGGCAAGTCGAAGCGGGGGCAAAAACTCTTAGGGTCTGCCAAAATCGGCAGAACCATGACAAGATAATAGTTTCAGCGTTTGAGTAATGTGGGAAGATGCAAATTAATTGCAATAAGGTCGGCTGAAAATGAACATTTTTTTCGATCTGCCAAAATCCTTCCCAGGAACCTTGCTCTGATTAAGTTTCAATATCGAGCA # Right flank : ACGACCTTAGATTAGCCCTAGCTGTTGCTTTAAGACTTCTGGCATATTAATTGCTATATATAACCCTTGTACATTCTCCCAATTTGTGTATTCATCCCAGGAAATATTTTCGAGGTTAGCGTGGCTGAGGTTAGCGCCGTTGAGGAATGCACTACTGAGGTTAGCACCGCCAAGGTTAGCATCGCTAAGGTCTAGATGGCTAAGGTATGCGCGGCTGAGGTTAGCATCGCTGAGGTTAGCGCGGCTGAGGTCTGCACGACTGAGTTTAGTATCGCTGAGGTTAGCGCGGCTGAGGTTAGCGCCACAGAGATTCGCATCACTGAGGTTAGTACGGCTGAAGTTAGCATTGCTGAGGTTAGCGTGACTGAGATTCGCATAGCTGAGATTAGCGCGGCTGAAGTTAGCATTGCTGAGGTTAGCGTGACTGAGGACTACTCCTCTAAGATATGCATCGCTAAGGTTAGCGTTACTTAGGAATTGTCCGACTATAGTAGTAAAAT # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:0, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAACGCCTATTACCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA // Array 1 1992-433 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZA010000146.1 Dendronalium phyllosphericum CENA369 scaffold146, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1991 37 100.0 40 ..................................... AACTAAAATGCCATGAGTTTCAGGATGAATCAGAGCGCAG 1914 37 100.0 33 ..................................... TGATAACACCAAGTATAGCAAGCTGTGCAAAAA 1844 37 100.0 33 ..................................... ATTTCATCATATTGGCGCTGCCCATCCCTAAGC 1774 37 100.0 36 ..................................... AGTAGCTTTATAATATGCTTCGCGGTTTTTCTTCAG 1701 37 100.0 34 ..................................... TGAAGACGCGATCGCTATCTGGAGAGAATTCCTT 1630 37 100.0 40 ..................................... AAATATATGTCTGATGTGTGATTCAACGGTTCGTTTTGAG 1553 37 100.0 37 ..................................... TTTTTATTTTTAAATTATCTAGCATTTTAGCTATAGA 1479 37 100.0 33 ..................................... ACTATCGTCACTAATCGGACGCAAAAGTACGCC 1409 37 100.0 34 ..................................... CAAGCAAACTGTTGCAAAACAATACGCTGTGAAA 1338 37 100.0 37 ..................................... TGCAATCAATTAGAAGGGGGAAAATTGTAATTCTTCA 1264 37 100.0 37 ..................................... GTGCTAGATCGTGCCCCGACACGATCGCATTTGCGAA 1190 37 100.0 37 ..................................... AAGTCATGGCTACGACCGAAGTCTAGCCCCGCGTAGC 1116 37 100.0 35 ..................................... TTCTAACAAAGATTGGATTTCACTGATAGATTTCA 1044 37 100.0 32 ..................................... AAACCACTGCCAGTCCCAAAACTCAACTCCAA 975 37 100.0 34 ..................................... ATGGTGTGGATGTGGGACGCAACAATGTAGCGTG 904 37 100.0 34 ..................................... GGCAATTTCACAGAATTTACTGGGAAGCATTATC 833 37 100.0 34 ..................................... AAAGAATCCTCGCAAGTGGATCAAGAGGGGGAAA 762 37 100.0 37 ..................................... AGGATAGAACTGAAACTGAAACTATCTGCCAGCCATC 688 37 100.0 34 ..................................... TCTGTCACCCCCAAGGCTCTGGCTGCAATACCCA 617 37 100.0 33 ..................................... TGATTTAGAAGCAGGAATCCTAACAACTTTGGT 547 37 100.0 41 ..................................... CGACGCTTCTGAGGAGTTCGCGCAGTCACTCAAGCAGCAAG 469 37 91.9 0 .................................GTG. | ========== ====== ====== ====== ===================================== ========================================= ================== 22 37 99.6 36 GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : CTAGACAATTAGGTTTGCAAAAAACCGCAGTTGCAGTTTCCGGAACGCGCCAACTTAGTAAGCGGGATATGAAGCTGAATGATGCCTTACCTCAGATTGAAGTCGATCCCGAAACCTATGAAGTTAGGGCAGACGGTGAATTGCTGATTTGTGAACCTGCGACAGTCTTACCAATGGCGCAAAGGTACTTTTTGTTTTAATTCATAACTTGTTTTGCTCAAGTTAAATCTATTGGTGGTAAAACCTTGATAACAGCAGTATTTTCATTCCTTCAGGCGCGGATGGGTAGCTGTTTGAAATCAAATTTTGGCAAATGAGCTTGAAACCCTTGTAACATCAAGCTTGCGAACAAAATATCTCTTTTAGTCGCCGCGCGCCTTATCTAGAAAGGATTTTAGCCATTTGCTGATTACTGGGTAACAATTTTTTATGCTACTATTACCTCATTCGCGCAACAGAACCTTGAAAACTCAATATAGATTGTATTCCAGGCGACCGCT # Right flank : CGACTATCGGTTGCACGACGAGAGTGAGTATCTCAGAAATACTCCTGGCGAGTGTCAATGCCAGTACCCGCCCAAAGGGGCATTACGGGTAACTGTAATGTCTCATAGCTAGAGGGTAAAATGCGCGACATCAGCAAGCCGCATAGTTAGGTGAAGTGCTAGGGTAAAACTAGACAGGGTTAACAGATGTGAATCCTTGCAGAGGCATCGTGAAGAGGAATTACCGAAAACGGCTGAGACGGTAAAAGGGATAAAGTGATTCTGCCCAATCCTCAGAATCAGGGACACCAGAAACCCCCGGTGTATAGAGGGAACCCAAGCTAGTTGTATCTTTCGCGTGTGATACGTAGGAACCCCAATGGGGTCTTTTGAACTAGGTCGATGTCAAAAGTAGAGATGGGAGTAATCCCGCTTTAATCCCCCAGTGGGTGTA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 313-855 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZA010000151.1 Dendronalium phyllosphericum CENA369 scaffold151, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 313 37 100.0 33 ..................................... AGTGTATTCCATTTCTTGAGTGATGACTATCTT 383 37 100.0 36 ..................................... ACTGCGAACCTGGGGACAATTGGTACAGCTGCAACA 456 37 100.0 34 ..................................... AAGAAGTCATTCACCAATGAGCAAGGGGAATTAT 527 37 100.0 38 ..................................... TAGTGATTTCTTCTTTGTACTTGGCACTGGACAGTGGA 602 37 100.0 36 ..................................... AGCTTAAGCAGAATTTTGTTCATACTTCTGAGCAAT 675 37 100.0 35 ..................................... ATCGTAAGAAATGATGGCGATCGCTCCACTTAATT 747 37 100.0 35 ..................................... CGCTTTTGCTCTTTGATTTAGCTTGTTGTAAATTT 819 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 99.7 35 GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : GTATGTGGAGAATCATTATTCAATGATGAACCCATACAAAAACACCATAAAATACCTTTTTGTGATGGGGGTAACGAAAGTTACGCTAATTTAGAACTAGTGCATTATTACTGTCATCAACAAATACATTCTCATGCACAGAATCACCTTTCTGAAATTGAGAATGAATTGAGTCCTTGGTAGCTCTAGGATTTGCTAAAGCCGGATGCAGGGTGAACTTGCTTGTCCGGTTTGTCGGGGGGAAAGGGATAGCAATATCCCTGCCCTACCCAGTAAACATGTATAGCCTCGTACCATCCTACGATTGGTATAG # Right flank : TTGCTTCTGAAGAATGGCGTAGATATGTTCGATGTACTCCAAAATATGAACCCACTTGTAGAAAGCGGCTAAAGTCTAAACGAAACGAAAGTAGTTATCGCTAAGACTCAAATTGGAAACTCCTTGTACCACTGCAACTAGCACGTCCGTCTGTTCTTGGTCAATATATATGCCTGTCCCTGTTTGACCAACAGGAGCAGAACCTAAGACATAATTAGCTGGGTTTAGTAAACTATCGCTAGAATAATATGACTTGGCAAGTTGGATAATATCCTGCTTTTTGTTGAAGTCAGTAATGATTGCGTATTCAGAAAAAGTATCTTCTTGAGCAAACGTTAAGCCATACAAAGTTAATCCATCCCCACTTCCTGGCTCTTTTATTCCTAGAATAAATTGGTCTGCACCAGCACCACCCGTTAAGGTGTCAACCGTATCAAGAGTATTTTGAAAAAAAGCCAAAGAAGTATCACCAATCAGCACATCATTGCCAGCACCACCAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 3352-4682 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZA010000152.1 Dendronalium phyllosphericum CENA369 scaffold152, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3352 37 100.0 34 ..................................... ATTTTTGGACATCCCGAAGCAGGAATACCAATAG 3423 37 100.0 31 ..................................... TTGAGCTACCGCACCAATGGGTTGAGCGATC 3491 37 100.0 33 ..................................... CAATTACTCTACGTTGAGCAATGCACAGCTACA 3561 37 100.0 34 ..................................... GCTAGTACCTAGAATTTCTACGCTAGAACGAGTG 3632 37 100.0 35 ..................................... CAGCAGAACGGTCTGACTTGCGATCGCCTTTGAAT 3704 37 100.0 39 ..................................... CCGTCGTTGTGAGACTCAAAATGTGGGCAGCTAGCGCAA 3780 37 100.0 33 ..................................... ATGCTCAAAATCTCTCGTTGGCTTTAACTCAAG 3850 37 100.0 35 ..................................... AAGTAAATTAAATATAGACAAATCAAAAAGGCGAT 3922 37 100.0 33 ..................................... GCATCTGTCCACATGGACACATACACTTCTCAA 3992 37 100.0 37 ..................................... TTGATCACCGATCTTTCTCAAGGATCGGGGCGGGGTT 4066 37 100.0 35 ..................................... AAAGACTGCTTTGAAATTGACTCCCTCCTGTAAAA 4138 37 100.0 40 ..................................... AGGTAAGCAGGCGATCGCTTTAGTCGTGCTGCGATCGGGG 4215 37 100.0 33 ..................................... TCGACTTGCCAAAGTTAACCCCCAGAAGATATT 4285 37 100.0 34 ..................................... TTGTTGCACTCAGGCTACTAAAGTTTATAGTTTG 4356 37 100.0 34 ..................................... TCTCCATCTTTTCAATTGGTACGCCTTCCTTTAA 4427 37 100.0 40 ..................................... GCGCATTGGACATGGTTCATCTACGTCTACTAATGGTCGC 4504 37 100.0 34 ..................................... ACCTGATAATTCTTTTCTTCTTCCTCACGACAAT 4575 37 100.0 34 ..................................... ACACAAGCATCCTCGAACAATATCCAGAAGCTTT 4646 36 86.5 0 ............-...........G........GTG. | C [4663] ========== ====== ====== ====== ===================================== ======================================== ================== 19 37 99.3 35 GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : ATGCAAGCAATGGTGAGAGTGTAGTTGGATAGCTTCGTACAACCTTCAGATTTTAATCTGGGGAACTACTGGAGAGTCTGCATTTGTAGTATTTTAATTGCTCTGGGAGACTGAACTAGAAAAGCGATCGCTATACTAGAAATGCGGTAGATAAAGGAATATAGCGACTCGCAAGTGATATTACTGCCAAATGATTTGTGTATGCTTGCTGTTTTGCTCAAGTTAAATGTATTGCTGGTAAAACCTCGATCGCAGCAGTATTTTCATTCCTTCAGGCGCGGATGGGTAGCTGTTGGAAATCCAATTTGGGCAAATGAGCTTGAAACCCTTTTAACATCAGACTTGCGACCAAAATATCTCTTTTAGTAGCCGCGCACCTTGTCTAGAAAGGGTTTTAGCCATTTGCTGATTACTGGGTAACAATTTTGTATGCTATTATTACCTCATTCGCGCAACAGAACCTTGAAAACCCAATATAGATTGTATTCCAGGCGACCGCA # Right flank : GACTATCGGTTGCACGACGAGAGTGAGTATCTCAGAAATACTCCTGGCGAGTGTCAATGCCAGTACCCGCCCAAAGGGGCATTACGGGTAACTGTAATGTCTCATAGCTAGAGGGTAAAATGCGCGACATCAGCAAGCCGCATAGTTAGGTGAAGTGCTAGGGTAAAACTAGACAGGGTTAACAGATGTGAATCCTTGCAGAGGCATCGTGAAGAGGAAT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA //