Array 1 104250-104854 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIBO01000008.1 Raoultella sp. T31 NODE_8_length_170674_cov_20.4354, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================================================== ================== 104250 28 75.0 68 T..T.T..GA...AT............. AAAGGGTGAGATGAGTAAATTTGAAGTTTTTTATATATAAAACAAAGAAGTGAGTTGATATTATTTCA A [104257] 104347 28 100.0 32 ............................ CGAATACGGATAAAGTCTTCTCGACGGTAATG 104407 28 100.0 32 ............................ AATGTGAAATCTGAATACGGAGATGGATTCGT 104467 28 100.0 32 ............................ GTGAGCGTAGCTTCAACGTAGTCGTTTGCTGG 104527 28 100.0 32 ............................ TATCCAGATTTCCTCGCCAATCTTCAGCTTGT 104587 28 100.0 32 ............................ TCTCTGAAGAAGGCCGAATCCATAACCATGAC 104647 28 100.0 32 ............................ TTGAGGTTAACGGTTTTTGGCGAGATGCGGAC 104707 28 100.0 32 ............................ TGCAGGCACTGTTACCGGTGGGATGGGCGAAG 104767 28 100.0 32 ............................ GTCCAGACCAGCCAACTGCTATGCATTACAGA 104827 28 82.1 0 ..G..................C.G.G.C | ========== ====== ====== ====== ============================ ==================================================================== ================== 10 28 95.7 36 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGGCTGGTCACCCCGCAGCAAAGTGAAAAGAAGGCGGAAGCGGCGGTATTCATCGCCTGGCTTAATGAAGAACTTGCGGCCTGGCGTCAGCGGGGAGATTTGCCAGTGCCGCTCTAGCAGTGCCCCGGCCATGCAACGGGCGCGCTTAACGGTCGGCGGACTGGGCAAACTCCCGCGCCAGCGCCGGAAATGCGGCCAGCCCGGCGGAGGGGTGGCGTCTGCCGGGTGTCCCTGGTGATTCCAGCGCCCGCCGTGCTGGTTGGCTCCGCTTCCCGTCCAGGTTTCGCTGGCGTAACGGCCGGTCACCAGACGATAGAAAATCATGCAAAGACCCCGCCTTCCAGGCGGCTAACACGTCTCAATAACGACATTTGTCATGTTTCATTTTAGTCATTTGGCGGGTTGTTGAGGGTTTAATCGCGGGCACGGTTGCCAGAGAGGCAGGATTATGCAGTTGACTACGGAGACCTTTTTATTTGTTATTTTTGTAAGTTATTGAT # Right flank : CGTATTAACTCGCTGATTATCAGAATAAATTGTGCCATTCATTTCTGGACGACAAACTGGAAAATCAGGCACGGCCGAAAATGATGATTCGAGAGGACCGACCGCTGGACGGTCCGCCATTTTCGCTTTATCAGCCCGCCATTCAGCTTTTACTGCTGCAACACCTCAGCAAATTTCGCCAGCCATTGCGGATGCGCGGGCCACGCAGGTGCGGTGACGAGGTTGCCGTCGACATGCGCCTGATCGATACCTATTTCAGCATAATGCCCGCCGCTGAGCCGCACTTCCGGCGCGCAGGCCGGGTAAGCGCTACAGGTCCGGCCTTTCAGTATTCCTGCGGCGGCCAGCAGTTGCGGGCCGTGGCAGACGGCGGCAATGGGTTTGTGCGCGGCGTCGAAGGCCTGTACCAGTTTGAGCACCTCATCGTTCAGGCGCAGATATTCCGGCGCTCGTCCACCGGGGATCAGCAGGGCGTCATAGTCCTGTTCTTTTACTGCCGC # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 115476-115923 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIBO01000008.1 Raoultella sp. T31 NODE_8_length_170674_cov_20.4354, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 115476 28 100.0 32 ............................ GTCGCGGCAGGCACGATTCTGGGCCTGACCAA 115536 28 100.0 32 ............................ CAGGGCGGGGATCAGTGCAAGTGCTTTGGATA 115596 28 100.0 32 ............................ AATGGGGCCGACCTGTTCGAGGCGCTGGAAAG 115656 28 100.0 32 ............................ GCAGAAGCTACCGGTATCGTGCTGACCCTGTT 115716 28 100.0 32 ............................ TTGATAATTGGCGCAGATAGAGCGTGCGTGGT 115776 28 100.0 32 ............................ TGGTTCCCCGGCTGTTCCCGGCGTCGGCGGTT 115836 28 100.0 32 ............................ TGCGCCATAGTTGTCGCACCGCAATACACTTC 115896 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCGTGCTACCCGCTCACTTTCATCGGGAGTGAGGGTTCGCCCCGCACTTTTGCGACGAGCAACGTTGCGCTCATTAATGCCCGTTACGCGAAGAATGTCCGCTTTAGACATCTCGGTCCATTCATGAATATTATCGAGTACGCTGACCGGTAGCCCCTGATTGAGAGATTCGATCAGCCGCATTCCCCGATTTGCAGGCAAACCGGCATAGCGCCAGAGCGCGTTGTCAGCAGGCTTCTGCTCGGGAACCCATGTTCTCATTTTTCATCTCCTGCTTTCTGTCATTTGTCATGGTTAAGTATAGTCATTTGTCTGGTGTTTGACAGGGCGATTTTTTGACGAGTCGTACATCCCTGGCAGATTCCGGAGACCCTTTTTTAATGTTGATTTATAATTATTTGATTTTAAATATTATTTTTTTACAGGCTGAAAAAAGGGGGAGAAGCGTCATTATATGAGGTTATCTCGTGAAATCAGTAAATTATGGAGATACTATGTCA # Right flank : ATGACATGTCCTGAACAATTTCAAAGACCTGATGTAGGGGGCAAAAACCACGGGCGTCAAAAAAACCGGCAACCCTTATCAGGACACAATCTCACAGTTGCTTTTAAAACGTGCCAGGACTTACTGAGATAAAGTGATTTGAACAGTTCAGCATCTGAAAGAGTATCGAATAACGATTCGCTCATCGTCGATTCTGAATGAACTTAAATGCCGTGGAACAGGCTGGAATTCTATGGGGTTTACCAGAAAGAGAACGTATGAAAACTTCACACCGTTCGATAACCGACAGACTGTTGCTGATGTCTGCGGAATAAAGAATGGTGCGTCCGAGTGGACTCGAACCACCGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCATTATGGTGCGTTTAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTATAAACGCATTATGGTGCGTTCAATTGGACTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //