Array 1 445848-442075 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTRE01000002.1 Xanthomonas citri pv. mangiferaeindicae strain DE0062 NODE_2_length_936996_cov_17.123751, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 445847 31 100.0 34 ............................... TTCGCGAACCGGCCATGCGCGCCGGGGCGCGGCA 445782 31 100.0 35 ............................... GTGGGCAACGATGCCGACCGCCTGGCGCGCGTCAT 445716 31 96.8 34 C.............................. TTTAAGCTGGCCGAGGTCGCGGCATACCGCGAAG 445651 31 100.0 34 ............................... TGGGGCGGCCTGTTCGGCTTCAGCCACGGGGTGA 445586 31 100.0 35 ............................... CTGGTCGGCTCGATCCGGATGGCCTGGCGCTGGAT 445520 31 100.0 34 ............................... CCGGATGACGAGCGCGAATGGAGCCTGCAGGGCC 445455 31 100.0 35 ............................... GCGGAAAGCGCGATCAAGGTCGGCGTGGCGTTCAG 445389 31 100.0 33 ............................... GTGAGGGTGAAGACCACGCGCGACGGCCGGCTG 445325 31 100.0 35 ............................... TCGTTGGTGGTGATGATCGAGCCGGCGCCGGGGTG 445259 31 100.0 33 ............................... CGGTTTCCAGCTGGCCGGACGGATCATTGGCCG 445195 31 100.0 34 ............................... ACGTGCCGCATCGTCGACGTGATGTCTGATGCCG 445130 31 100.0 35 ............................... ACGCAGACGGCGCGCCGTGCTTTCGCGTGCGTCTT 445064 31 100.0 34 ............................... AAGACCAACAAGAGCATGGTGAACACCGACGCGC 444999 31 100.0 34 ............................... TTGGGGGGGGCGGCGAGCAGATCGGGCGAAGCTC 444934 31 100.0 36 ............................... ACGAAGAGGCTCAACTGACATGGCGATGACCACGTC 444867 31 100.0 34 ............................... GCGGAATCGATCGGCCCGCGCATTGAGCACAGCT 444802 31 100.0 35 ............................... CCATGTACGTCAGCGTTACGCCCGCGTAGTCCCGT 444736 31 100.0 33 ............................... AGCAGGTTCGCGCGGCTCGCACGGTCACCCATC 444672 31 100.0 35 ............................... CCTGATGACCATACGCTGTCGGTGTTCGATACCGC 444606 31 100.0 34 ............................... GTCGGATCGCTACCGGCGCTCGCTGATTGGGCGA 444541 31 100.0 35 ............................... CGGATCGCGATCATGGTGGATCAGACCGGCGCCGG 444475 31 100.0 34 ............................... GTCGGCCTCGCATTGCTCTCGATCGGCACTGCTC 444410 31 100.0 33 ............................... AGGCTCATGCCGGCAGGGCAATTGCTGCCCCTG 444346 31 100.0 35 ............................... CCCTTAGTGAAAGAAACAGGGCCGGTTGCCCGGCC 444280 31 100.0 35 ............................... CCACAGCAGGTCAGCCGCATCGTCCAGCCACCGGC 444214 31 100.0 33 ............................... GGTCGGTCGACGCCGGCCGCCGACATCGACGAG 444150 31 100.0 35 ............................... GGCATCCACGCCCCCGGGGAACACGGAGGCAGCGC 444084 31 100.0 35 ............................... CCCCTGCGCCTGCTTCACGCTCGCGGCCTGCGCCT 444018 31 100.0 36 ............................... ATCCAGTACGATCGCGACGGCCACAAGTACGACATC 443951 31 100.0 36 ............................... TCCTACCACCCAGAAACCACAACGAGGACTAACACC 443884 31 100.0 35 ............................... TGTTCGGCCAGCAGCCGTTTCCCGCAGGACGGGCA 443818 31 100.0 34 ............................... GCGCGGGGTGTCCGGGAGTAAAGCGGGGTCAAGG 443753 31 100.0 35 ............................... AGCGAGCTGCGGCCGGGCGTGTGGGAGACGAGCGG 443687 31 100.0 36 ............................... CCACGTCCGCCCCATCACCTGGTCGAAGCTGTGCTC 443620 31 100.0 35 ............................... AAAGGGACCGCGGTGAACGCGGTGGGCCTGCAGTC 443554 31 100.0 35 ............................... GACGACGGCTGCCGAGCGATCGCAGAGCTGCCGTT 443488 31 100.0 34 ............................... TCCTCGTCGGTCAGGCTGCTGTCGAGCACCTCAT 443423 31 100.0 35 ............................... GACAAGGGCCGGGTCATCGCATGGAAACTAGAGGC 443357 31 100.0 33 ............................... CCCAAGCCGCTAGTGATCGGCAACGAGTCGAAG 443293 31 100.0 36 ............................... CGGCCCGTGGTGGCTGCTGCGCCCTGGTCCGCTCCG 443226 31 100.0 34 ............................... GCGAGACATTGAAGGGGGTGACCGATGGGCGCTG 443161 31 100.0 33 ............................... CTGCGCCGAGGCGTGGCGGTAGCGGTATCCGTC 443097 31 100.0 36 ............................... ACGGCCTCAGCGATGCAGAGCTGGTGAGGTTGCGGA 443030 31 96.8 36 ..............................A ACGTGCGAGGAGCGGCACGTGGTCGGCCTGAAGAAA 442963 31 100.0 35 ............................... TCGGCATGCCGCAGGAGTGGCAGCAGCTCATGGGC 442897 31 96.8 35 ......................A........ GAGCTGGGCGCGAAGGGCGTCTGCCGTGGCTTGCG 442831 31 100.0 34 ............................... GCCCTTCGGCCCTTGCGCTGCGGCTCGATCGCCC 442766 31 100.0 35 ............................... CTCGAAGTCGGCCAGCTTGTCGCGCTGCCAGACCT 442700 31 100.0 34 ............................... TGCACGATGTTCGGCGTGGTGTTGTTGCGCTGGC 442635 31 93.5 36 ...........G........G.......... GGGTGGAATGACCATGGGCTCGTGAAAGCGGCGGAG 442568 31 100.0 36 ............................... CACAGGGCATCCAGCATCGCCGGAGCGGCTGCGATC 442501 31 100.0 36 ............................... CCGTCCCGAGACCCCGCCGCGGTGATCGCCGCTGCG 442434 31 96.8 35 .................A............. GTCCAAGACCGCCACGTGCGGCGTGTTGGCCTCGT 442368 31 96.8 35 ...................T........... TGCCGGAGCAGATAGCCCGGCTGGGCGCGCAGGTA 442302 31 100.0 33 ............................... AGGCGGAACGGTGTCGCACCCGTGGTGACGGTG 442238 31 93.5 36 ..A......C..................... TACCAGCGCTCGGCAACGATGGTCGACGCGCTTGGA 442171 31 93.5 35 .....A...C..................... CGGCAGATCAAACGGCCGCTGCCGGACTGCTGCCC 442105 31 87.1 0 .................T.......G...CT | ========== ====== ====== ====== =============================== ==================================== ================== 58 31 99.2 35 GTCGCGCTCTCACGAGCGCGTGGATTGAAAC # Left flank : CCGTTTCTCTGGAAATGAAGGGAGTCCAGCAGCAATGATGGTGCTCGTGACTTACGATGTCAGTACCCGTTTCCCTGGCGGGGAGAAGCGCTTGCGGCGCGTCGCCAAAGCCTGCCGCGACTTCGGCCAGCGCGTGCAGTACTCGGTGTTCGAGATCGAAGTGGAGCCTGCCCAGTGGGTCGCACTGCGGCAACGGCTGTGCGAGATCATCGAGCCGGAGCTGGACAGCCTGCGGTTCTACCAGTTGGGCGCCCGATGGGAGCAGCGCGTCGAGCACATCGGCGCCAAGCCGGTCACCGATCTCAAGGGGCCGCTGATCTACTGACGCGAACCCCAAGCGACCGGCGAAGCCCGGGCCGGTTCGCGCACCCCCAAGTCATTGATTGCACGAGAGCGCTTGCGCAGACATCCGTGCTGCACGACTGATTGGATGGCGGGCACGCCCGGTTCGCGAAAATCGACAGTTGGCGCCTTCCGCATCAGCTACTTATCCTGACGCC # Right flank : TTTCCACGTGCGCTCGGAAGGTGCGTGGTGCGAAGCGGGTGCATTGCGTATCCACTCGCACGTGCAAGCCTCCCGCATCCGTCAGGCGGACGTATCTACATCGATCTACCTGATCGAGAACTCCCGCGTCTCCACCACGGTGCCGTCGAGCAGGATCTCGAGGGTGTAGGTGCCGACCGGCCAGCCCTCGGGGTGCTGGATGTCGAAGGCGACGACCTGGGGCCCGGCGAGCACGTCGGCATCGGTGCTGCGCACGAGCTGGCCGCCCTCGCCGAAGGTCCAGCGTGCGGTCAGGCGCGCGGCGCTGCCGCCGTCGGTGGCGACGGACGCGTACAGGGTGTCGGTGGTGGCGAACTCGGACGCCGGCGTGGCGACGCGGTTCTCGGCGTCCACGGCGTTGCCCAGCTCGACGCTGGTGACGGTGGCCGGTGCAGGCGGTTCCGGCGCCGGTGCGGGGGCCGGCGGCGGGGTCGCGGCGGGCGCGGCGGGCGGCGGGGCGT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCTCTCACGAGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //