Array 1 3112-23 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQLR01000001.1 Methanosarcina soligelidi strain SMA-21 M886DRAFT_scf7180000000008_quiver.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 3111 37 100.0 35 ..................................... ATCCCAAAGCCCGGAAAAAGCTTATCTGGGCTTCA 3039 37 100.0 40 ..................................... ATCGCCTGGCTGACGAGGTATATTCCTCGGAACTCAACGG 2962 37 100.0 37 ..................................... ATCATTATCAAATCCAATTGCATTTCTGTTTAACAAT 2888 37 100.0 34 ..................................... AATATGAACATGCTGGAAGTCACAATCTTTCAGA 2817 37 100.0 34 ..................................... CTGTAATGAACGGAGAGCAAATAATACACACAAA 2746 37 100.0 35 ..................................... CTCTTTAGTTAGCATGGTTAAGCCTCTTCTGTGTC 2674 37 100.0 35 ..................................... CTCCGTCTACCCTGGCAACTAGAGAGTGCCTAAAT 2602 37 100.0 36 ..................................... AGTAGTTCATAGTTTACGTTGTCTTCAGTCATTTTT 2529 37 100.0 34 ..................................... AGTTAAGCCATGTTCTAAAGACTATATGCACAGA 2458 37 100.0 34 ..................................... AGAAGCTCTTAGAAGATCCCCGAGAAGATCCCCG 2387 37 100.0 35 ..................................... TGTCATGGCACTCTGTGATGTAGATTACGTTAGAG 2315 37 100.0 34 ..................................... TGAATAGCGACTATAGGAATTAATTTCATTAGTG 2244 37 100.0 37 ..................................... CCTATCTGTAAATTTTATCACTCCTGCAGGTGATGTC 2170 37 100.0 35 ..................................... AAAAATACACAGCTGGATACATGGAGCACGTTAAA 2098 37 100.0 37 ..................................... AAAAAAAGTCAAGTAGATATAAAAGGGAAAATCAAAA 2024 37 100.0 34 ..................................... AGGAATAACAATGTTTAACCTCAAAGACTTTAAG 1953 37 100.0 33 ..................................... TTTCAAGAGGCGGCGGAATGAGAATTTAATCAT 1883 37 100.0 34 ..................................... TTTCAAAATCGGCAGTAATCTCGAAGGAATCAGC 1812 37 100.0 38 ..................................... AAAATGGATCTGGAATACTTACTATTTCACTCCTGACG 1737 37 100.0 35 ..................................... CAATGTCGTCGTCAAAAATCCGGTTCTCATTTTCT 1665 37 100.0 42 ..................................... AAAAGAAGTTAATTATTTTACGTAGCATGTTTTCGCTCCTTT 1586 37 100.0 37 ..................................... AAAATGATGGAGCTATAGATTCATCTGAAAAAAATAC 1512 37 100.0 36 ..................................... TTCATGAGTGCCAGGTAATTTCCACTTCTCAAGATC 1439 37 100.0 35 ..................................... AAAATTGTTATGTTTATCAGATTTCAGATATCTGG 1367 37 100.0 36 ..................................... CTCTATGAATACCCAGCTTCCAAGAGGTCTGTAAGG 1294 37 100.0 36 ..................................... AAGTCTATTATGGGGAGGGCTCCATCTGATGCCTGG 1221 37 100.0 33 ..................................... CTGCGGGGCTCTTGTATCCAGCTCATGCAAAGC 1151 37 100.0 35 ..................................... ATAAGTACTTGTGTAGGAAGTTTAGAAGTGGAAAG 1079 37 100.0 37 ..................................... TAAATAATATCATGCTTGAGGAAGGTCATAGTGATTG 1005 37 100.0 34 ..................................... ATTCTGTATCCTAGATACCATGTCAGTAACCCAT 934 37 100.0 37 ..................................... ATAGATTTAATGGATCTAATAATAGTACAGTATTCGA 860 37 100.0 37 ..................................... AAAAATCCATTAAATCTGTTATTTCCATCATACCAAC 786 37 100.0 35 ..................................... ATACTCAGGAATGCCGCTAATCATCAGCATTTCAA 714 37 100.0 35 ..................................... CTGCAGGACTTCTTTATCCGGCTCATGCAAAACTT 642 37 100.0 36 ..................................... CAAATACTGTAGAGAGTAATAATCCAACCGTACTCA 569 37 100.0 34 ..................................... CTGGAGGGGAATTGAAAATATCTATGGGAACTGT 498 37 100.0 36 ..................................... ATAAATTGGATACTGGCAGTTAAGGGAGTTTATCGA 425 37 100.0 37 ..................................... AAAACCCGCCTTGAAGGTCCAGATCAGGTAAATCTTT 351 37 100.0 36 ..................................... TGGCAGTCCTTGTATTCATTGCAGGCGGCTTATCCG 278 37 100.0 38 ..................................... TTTTCATAGGATTGAATATTTTCGGGTTCATTATAGTT 203 37 100.0 34 ..................................... TGAGAGTTTCGATTGTGATAAACTCAGGGTTCCC 132 37 100.0 36 ..................................... TTCAGAAACGCATAGCCTTAAAATAAATATGAGAAA 59 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 43 37 100.0 36 ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGAAAGCGAAATATTCATTGCCTCTAAAAAATACCATATAAAAGGGATTGTGGACGAGGTTCTATTTCTGGAAGACGGAACCGCTGCCCCTCTTGAATATAAATTTGCCGAATACAAAGATAAGCTTTTTAAGACTTACAAGTTTCAAATGGTTTTGCAAGCACTTTTAATTAGAGAAAATTACAATATTGAAGTAAACCGTGCATATATTTGTTATACTCGAAGCAATAGTCTAGTCAAAGAGATTGAGATCAGCCTTTCTGATTTCAAAAAAGCAGAGAAAATAATCGAGGAAATTCTCGATATCGTTCAAAAAGGCTTATATCCCAAGACAGCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGTAAGAATTTTAACCCCAAAAAAGGGCTCATTTCAGGTCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : CCTGCATATGCTGTGCAGCACGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 2 3235186-3239082 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQLR01000001.1 Methanosarcina soligelidi strain SMA-21 M886DRAFT_scf7180000000008_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3235186 37 100.0 35 ..................................... AATATTGTACTAGGGCACCTGCAAAAAACCATATT 3235258 37 100.0 35 ..................................... TTTAACTGTTTAGTTGCTTCCCTTGCGGAATCCCA 3235330 37 100.0 36 ..................................... TCTATTAACCCGCTTCTCTTCTTATTTGCAGCTTCA 3235403 37 100.0 37 ..................................... CACTCGTACTCGTTCCCTACATCAATTGTAGCAGCCA 3235477 37 100.0 37 ..................................... TAAAAATTAAAGTCACGCATGTACGTGCTCCTAAAGT 3235551 37 100.0 34 ..................................... AGGATATTCAGAGTCAAGGTGCTGTAGCTGGAGC 3235622 37 100.0 37 ..................................... TAGTACTGTAGATGCAATAAGGGCTAAACCTGTATCT 3235696 37 100.0 35 ..................................... TTCAAGAGGTAGAAGAGCAGGAAGAACCAGAACAG 3235768 37 100.0 35 ..................................... CTCTGTGAAAAATCCTTTTCTCCAAAAACGTTCTT 3235840 37 100.0 37 ..................................... TATGGATCTGCCAATACATCATTCGAGTTTTGGTGAT 3235914 37 100.0 34 ..................................... ATATTAAACCATATTGTAGGTGTTTTACCTTTCA 3235985 37 100.0 36 ..................................... TACGCAGCATGATAGGAAAAGTGAAAATTCCAAATG 3236058 37 100.0 38 ..................................... TACTCCCTTAGTGTAGAGGTCAATCACGGAGGGCCTTG 3236133 37 100.0 37 ..................................... AAAAAAGTAAAACATTAAGAAGAGCACTCTTCAGATT 3236207 37 100.0 36 ..................................... CTTTATCAGGAGTTCCTAATAGCCCGTCTGTAATTT 3236280 37 100.0 36 ..................................... TTATTCAGGAGTCGCAGGGAGAAGAGCCCGATACCT 3236353 37 100.0 35 ..................................... TTTTTCAGTTTTGCTCCATGCTTTCAGTTTTGGTA 3236425 37 100.0 36 ..................................... AACAGTCCTCACAATAAAAATCATCACCGTACCAAA 3236498 37 100.0 37 ..................................... GAAGCGGAATAATTAGCAATTGCTTTTGCTACACCAG 3236572 37 100.0 35 ..................................... ATCCAGCCTCTAAGTTGAGTATCAAGCTGTTTCTT 3236644 37 100.0 37 ..................................... ATTTCTCAGCCGGGTGTCCTGCTTCAACAAGTATCTC 3236718 37 100.0 37 ..................................... TCCTTGGCTACTTCAAATTCAGTTTGTAGTTTATTAA 3236792 37 100.0 37 ..................................... AAAACGTTATCCCACTTTTCTTTGGTGATTCCATAGG 3236866 37 100.0 38 ..................................... TCAATCACACATTCTTTAAAGTCTTCTATCGTAACTTT 3236941 37 100.0 36 ..................................... TAAAGTTAGATGTACGTGGCGCATAAGATACACTTC 3237014 37 100.0 36 ..................................... GTTTTATAGTTGTTACTACTATAATAATCACCTCTA 3237087 37 100.0 38 ..................................... TTCATTCCTCGAAGCTACAAACACAACAAATCTAAATT 3237162 37 100.0 36 ..................................... CCTCGCTCTTGCCGGATGGGACGTAAATGAAATCAT 3237235 37 100.0 37 ..................................... AAAACTCCTGCTTCAATCTGTTCGGGGGTTGCTACGT 3237309 37 100.0 38 ..................................... CCTCGTTTCTTTTTTTTGAAAATCCCAGATTATGACGT 3237384 37 100.0 34 ..................................... TTCTCAGGGAGCGCGGAGGCACAGCGAGAAGACC 3237455 37 100.0 34 ..................................... TTAAGAAGTCTGAACCTGTGGAGCAGTTGAAAAA 3237526 37 100.0 33 ..................................... AAATTGGCGATTTCTTTAGAGTTAAAGGTAAGA 3237596 37 100.0 37 ..................................... ACATAGTCATACATGCTGTCATAGAGGTTCACGTATC 3237670 37 100.0 34 ..................................... TAGCTATCTTAGCTATCTTTTCGGCTCGTTGGAA 3237741 37 100.0 36 ..................................... CATTCAACGATATTTACAAGCCTAGTGTAATCCCCT 3237814 37 100.0 35 ..................................... AACCTTCTACAAGATAATCCAGCCACATTTTTTTA 3237886 37 100.0 34 ..................................... CCACCTTGTAGGTAATAATCTTTCCGATTACTAC 3237957 37 100.0 35 ..................................... TTCCAAGAGCCGTGTAACTGCATGTTGCGGCTTTC 3238029 37 100.0 33 ..................................... TCCCTCCTTAAGTTGTCACCGTTCCGAGTCCAA 3238099 37 100.0 36 ..................................... TTAAAAAAATGTTCTTTCTTGCAAATCCGGTTAACT 3238172 37 100.0 37 ..................................... GTTCTCCTGATTCGTTATCTATGCGATGTAATACACA 3238246 37 100.0 37 ..................................... TTATGGTGATCCAGAGAAGGATATTCCGGCGAAAGAG 3238320 37 100.0 36 ..................................... TATTCATGCTTCAACTTCCTGCGTTCCCTTGCTCCA 3238393 37 100.0 36 ..................................... ACCCTGGGTCTTCTGAATGGTACTGGACAGGTTCAG 3238466 37 100.0 35 ..................................... GGGTATATAGTATGTTGTAGTAACGTAGGAGGAAA 3238538 37 100.0 36 ..................................... AATAGTGTATCTGTGACACTTACAACCGGCACTGAG 3238611 37 100.0 36 ..................................... TCGTGTCTTCTATGTCGGAAAAATAATCCTCATCGT 3238684 37 100.0 35 ..................................... TAATTCCAAGATCACCATGCCAGATGGCTCTAATC 3238756 37 100.0 34 ..................................... ACGTAATTGATGTATAACGATATACATTTTCCTT 3238827 37 100.0 35 ..................................... AGATTGATCTTACCATCTCCTATTATTGTAAGCAA 3238899 37 100.0 37 ..................................... TGTCTCCTCCAACGTGCATCACTTCTTCATACACTTT 3238973 37 100.0 36 ..................................... TCAAGAAGAGTAGTGCATTAAAACATCTAGAATCCA 3239046 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 54 37 100.0 36 ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : ATTTAAAAATATATCGCTGGACACGGAGAAATATGGAGAAGGCCTGACTGTTATCCGTTCAGCCCAGTGCCCATACTCAGTAAAAAACGTGGATGCTATTTTGAAAACTGCAAGGGAGAAATTGAAAATAAAGGCTAACCTGATTGACCTTGAGAGTTCAGATGAGGCTCAGCATGTGCCCTGTGCTTTCGGGACCTTCTGTATTATTTATAATGGCAAGGTTATCAGTCATCATCCAATCAGTAATACAAGATTTGAAAACATTATGAGAAAAATAATCAAATTTAAATAGTCCATACCAGATTTCAAAACCCGTCCACAGATTTAAAAACAAAAGTTTAATAGAAAGAAAAGCATATTTTGAGATGTTTCCAAACCACTAAAAAACCCTTTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGTAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : CTTTTTATTTGGCATGAAAGTCCATGATGAGAAAACTCATCACGTACTCTCTCCTTCCTTTTTTCCCATAATTGCGATAATTCCACTAATTATTGTTATCCTTTCATCAACCGAGAATATGTCTGCCTCAACAATCTTTCTCTTTTTAACTTCTCCCTTTTGGTATCCTGTTTCATCTTCGTACATCTCATCGTTTGTGATCAAATGCCATATTATTGTTGCAATTTTCCTTGCTAAGGCAATAATTGCCTTAGCATATCCAATTGTCTTCTTTTTCCTGTTAAAAAACTCCTTTAATCTGCTATTTTTCTTTCTTGCTGCTGCTTGAGCAATCTGAGTTAGAATCCACCTTGCTACTTTTGATCCTCTCTTAGTGATTCTTCCGTTATGGTATTTATCTGCAGATTGATACACATTAGGAACTATTCCAAGCCATGAAGCAAGTTTATCTCCCGTTGGAAAATCCCTGAAATCTCCTATTTCAGCAATTAGAGTTGCCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 3 3240636-3244602 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQLR01000001.1 Methanosarcina soligelidi strain SMA-21 M886DRAFT_scf7180000000008_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3240636 37 100.0 35 ..................................... CAGAGCCGAATAACATCCTCTACCAGTTCAGTAGA 3240708 37 100.0 37 ..................................... TCCGTCTGACACTGGCATCCCGCCAGGTGATTTTGCG 3240782 37 100.0 35 ..................................... CATGAACAGTATCATCCGATCCGACGAAGCCATAT 3240854 37 97.3 36 .............................G....... TATCACCAATGATATAACATTCCATGCAAAAATGAA 3240927 37 100.0 36 ..................................... ACTATTGTAAAAGGGGAAAAAGAAAATATATTACAT 3241000 37 100.0 37 ..................................... TTTTCTCACATATATCCAAGCACTCGCTTGTAAACTT 3241074 37 100.0 38 ..................................... CGTGCAGCATCTAGTATGGTTTCATCATCGTATTTTCT 3241149 37 100.0 34 ..................................... ATTTGATCTTTATACCATTTCAATGCAGAATTAT 3241220 37 100.0 35 ..................................... CTAATTTTTCCTCTTTAAATCCACTTGGGTCTGTA 3241292 37 100.0 34 ..................................... TGGTTGCCTGTCCTTGCCCGTCAAGAACTGTATT 3241363 37 100.0 35 ..................................... TTGTATTGTATCCTGCCGTCCCGTACGGATTATAA 3241435 37 100.0 34 ..................................... TAAATATTGACATTGTGTACGGATGAAACGAGAA 3241506 37 100.0 38 ..................................... TTTGAAGAAAAATTAGCAGAAGGTTTTAGCAGAGGTAG 3241581 37 100.0 38 ..................................... TTTCATGTCAAAAGTGGAAAGGGTGCTATCTGAATTCG 3241656 37 100.0 37 ..................................... GTTACAAGTAGATTCTTGCAGCCTACCTCTTCGGCGA 3241730 37 100.0 36 ..................................... TTGATACATAGAAATTTCCTCTACCCTTGTATGGAT 3241803 37 100.0 36 ..................................... CACACTGAACGAAATGATAATGGAGTGAATATACAG 3241876 37 100.0 35 ..................................... TTGCAGCCCATTTCTCTACAGATAAAAACTGTCAG 3241948 37 100.0 37 ..................................... AAAAAAGAAATGAAAGGAGATTAAGTTTCTCGATAAA 3242022 37 100.0 36 ..................................... TGTATAAAGCAAGTAGGCAAAAAATAGCAAATTCGA 3242095 37 100.0 37 ..................................... AAATCATACGAAATGTGATAAATTCCTGTTTCAGAAA 3242169 37 100.0 38 ..................................... AACTAACGTTCAGAAGATTGAGATGAGTTGTTTTTATC 3242244 37 100.0 34 ..................................... TGGGTGCAAAGATGACACAAAAAACCGGAGAATA 3242315 37 100.0 36 ..................................... CCAATACAGTATAACTGTTGTTGGTGTTTTGAACAA 3242388 37 100.0 35 ..................................... TCCCACATCCCTACTGCAACCATGTCTGAACCTGC 3242460 37 100.0 37 ..................................... AATTCACTATTTGCAAGCCTATTTACATTATCAGGTA 3242534 37 100.0 34 ..................................... CAGTCGTTGAGATGGAAATCTTTCCACATTTCTG 3242605 37 100.0 35 ..................................... CTCTGTGAAAAATCCTTTTCTCCAAAAACGTTCTT 3242677 37 100.0 35 ..................................... AAATTTCACCTGCCAGCAATCCTTATCATTATCCC 3242749 37 100.0 35 ..................................... TGTAGTGCTTGCCTTCAAGAGTGTTGATATACGGA 3242821 37 100.0 38 ..................................... TTATGTGGATAAGGACTTCCGACTCCCCCTAGTAAAGA 3242896 37 100.0 35 ..................................... ATATCTCCTCGTTACGTTTCCTCCACATTCAACAT 3242968 37 100.0 33 ..................................... CATTCAGGTGTTTATTGTGGCGGCTCTTGTAGT 3243038 37 100.0 37 ..................................... TCGTACATCTGAAGTTTTTTGAACCAAATTAACCCCG 3243112 37 100.0 37 ..................................... TTTTGTTTTCAAGTTCGGCTGTCATATGACCACCTGT 3243186 37 100.0 36 ..................................... ACATCTTAAAAAACGCATTTGATAAATATGATGGGG 3243259 37 100.0 37 ..................................... TTCCGTCGATAATTACCAGGGCACGGAAGAGGACTGG 3243333 37 100.0 37 ..................................... TGTATGTACATGTCTCCGATCCTCATACTCAATAACG 3243407 37 100.0 36 ..................................... GCATCATCGTTTCCGGACCCGAGAGATATGATATCC 3243480 37 100.0 36 ..................................... TTCACCATATTTGATAAAAATACGTTAGTATGTTAA 3243553 37 100.0 37 ..................................... ATGCCAGTGTTGCAGCTTCCGTGCGGGTTTGTGTTGA 3243627 37 100.0 36 ..................................... AAACACAATTGAAGTTATTCCTATCGCTATATTCTA 3243700 37 100.0 37 ..................................... CAGGAAAAGGTATCCGAAATACAGGTATTACAGGTAG 3243774 37 100.0 33 ..................................... CATAACAAATTCGATATTCATCTCTCGATACTT 3243844 37 100.0 34 ..................................... TGATAGGCATATAATTGATGTTTTGATAGAAAAG 3243915 37 100.0 34 ..................................... TATAGAATTGTAATTGCAACAGACGATGAAACAC 3243986 37 100.0 37 ..................................... TCCGTTATTGCCTCGTTTTTACCAATTATCCCTTTTA 3244060 37 100.0 36 ..................................... AGATCGTACTGTAACTGCTTTACCAAATCGTCAAGG 3244133 37 100.0 34 ..................................... AATTACCTATATTTCCACTCCAAAATCTGGTCTA 3244204 37 97.3 35 .....T............................... AAGTGGATACATGCCCCACATGACCCCATTGAACC 3244276 37 97.3 34 .....T............................... TTTCGACTTCCCATCTCCTGCTCCTGATGTCAAA 3244347 37 97.3 36 .....T............................... CGGGACTCTGAGGTGATCAAGAATGACAAATGCACT 3244420 37 97.3 36 .....T............................... TTATTTTATGTTTTAAATTCCAGATAACAATTCTGA 3244493 37 81.1 34 GG...A...T.GCT....................... TTGAATCGTTCGTTCGGTTTTCTGTGATTTAAAA A [3244498] 3244565 37 81.1 0 .G...A...T.GCT......................G | A [3244572] ========== ====== ====== ====== ===================================== ====================================== ================== 55 37 99.1 36 ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : GGCAAATGATCTATCAATGCCTCATAAATCGGAACCCAGAAATCACTTGTTGATTCACAGGCAACAACATCACATTTTTCAGAGGTTACTAAATTTTTAAGATCTAAAATCCCATCATCATCTCTGGCAAAACGATGTTGTTGTTTTTCACCGGATCTACTGAGGATAGTAGCAATAACAAAACGTTTGTGAATGTCTAAACCACAAGATTTGTTTATTTCTCCGTCCAATTTACATTACTCCATCATTTCCAGGACAGTAGAATTGCTTCAAAGGCAATTTGGCATCCGTGATCAAGGTCACATCTGGGCCTTCGATGGCAATTCAATGGTTAGTTTTTTGACGGCTTCGGAGAACCAAAGTAAAAACAACCTTCCTGTCCAAAGGTAATGATGGAGTTCTATTATCAAAAAAGCTAAGTGAAAAAGACTTTCATTTTTTGGGCATGTTATTCCAAGAATATCATGTGTGTTTTTTGACTGTATTTATCCCTCCTTTCT # Right flank : GTTGTTCTTTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAATTCGGGAAAAAACCGAATTCTTCGCGGCTAAGTATATCAGGATCTGTAGACGACTGAAAATTAATAACCATTTACGGAGGTACCTGATATTCAAAACCAGACTCTAGCCAAAATACAACTGAAACTATACAGCAAAGCGAAGAGAAACCCCGAAAAGAAGTTTAAGAAACTTAAAAAACTGCTTTTGAAAGATGAGATCCTGCACACAGCCTGGAAGAACCTTAACAGGAACACAAAAAGCACCGGTTTTGAGTCCCTCACTATCCAGCAGGTAGAGGCTTCAGGGGTCGACAAATTCATTCGATCCGTAAAGAAGGAGCTTGAAGAAGGCCGGTATACTGCCGATGAAGTAAAAAGAGTCGAAATTCCAAAGAGGAATGGAGAGAAAAGGCAGCTTGGAATTTTAACCCTGAGAGACCGGCTTGTCCAGGGAGCTG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 4 4064433-4060458 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQLR01000001.1 Methanosarcina soligelidi strain SMA-21 M886DRAFT_scf7180000000008_quiver.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 4064432 37 100.0 35 ..................................... TCTCTCGTCTTCCCAAATCTTCCGTATGATTCAGG 4064360 37 100.0 36 ..................................... TCGGCTAAGATATTATTGTCGAGAAAAACAATTTTA 4064287 37 100.0 37 ..................................... TGATCGCTTCGTCTTCGATATGATCCCACGCGAAGAA 4064213 37 100.0 38 ..................................... TTACCCAATGAAAAAATAGTCCATATCGGGTTCAGACC 4064138 37 100.0 35 ..................................... GCAAGTTCGCCCATTTTTTCAGCAAACTGTCTTTC 4064066 37 100.0 35 ..................................... TTATAAAAGTCTGAATTCTTGCAGTATGTGAGTCG 4063994 37 100.0 38 ..................................... GCCGATCTTGTAAAAGCGAACGTCGGTCAAGCAGATTG 4063919 37 100.0 35 ..................................... TCCAGATTTCCGTTGCTGTAAGTGGGAACCGTTTT 4063847 37 100.0 36 ..................................... TAGTATAGTATAGTATAGAGCAATTCCAACCAATCA 4063774 37 100.0 39 ..................................... TCCGCACACAATAAAATACAGATTATTGCAGGTTGAAAA 4063698 37 100.0 34 ..................................... ATGCACAGCCAATCGATTCGAGGTCTGTAATACT 4063627 37 100.0 34 ..................................... TTTTCCTCATGTTTCCCCCGTCAGTTCTACAGTA 4063556 37 100.0 36 ..................................... TCTTGATGAAAAAACAGGGGCGGTAACGTACTCATG 4063483 37 100.0 35 ..................................... ATGCGAGTTATTGTTCCTGGCGGCTATTATTCCTA 4063411 37 100.0 35 ..................................... TACACCTGCATCGAACAGCCGGATATTGCATTTGT 4063339 37 100.0 38 ..................................... TAAGTATGATTCAATAAGTTGTAGATTGCTTCGGCTTT 4063264 37 100.0 37 ..................................... TATTGCCAAATAACGGATGCGTATCAAAATTATAATC 4063190 37 100.0 35 ..................................... TATCCTCTGAATTATTGTCAAAATTAGCGTTAAGA 4063118 37 100.0 37 ..................................... ATATGGGGTTCGGTGGGGCTGCCCTCACCGGCGGGGC 4063044 37 100.0 36 ..................................... GACTTTACGGTTAGAAGCATGTTATACACCTTTGCT 4062971 37 100.0 36 ..................................... ATCATTGTCCCTAACCTGGTAGCAGCTCACACTCTC 4062898 37 100.0 36 ..................................... ATCATTGTCCCTAACCTGGTAGCAGCTCACACTCTC 4062825 37 100.0 35 ..................................... AGAATCTTGCCCTAACTTCTGTACTATTTCCTGAA 4062753 37 100.0 34 ..................................... AAGTTAGAAGTTCCATCAGGTCACCTTATCAACA 4062682 37 100.0 37 ..................................... TCTGGCCTCTCCTCATTGCCTGGCCCACATCAGTAAT 4062608 37 100.0 38 ..................................... TTTTGTAATAAATTGGTGTTACGCGGTAAAGGGAGTGA 4062533 37 100.0 35 ..................................... ACGACCAACCAGTGACACCCGGGCATTTATCCTGC 4062461 37 100.0 37 ..................................... CTCAGCTCGGCGAGGCTATGAAATATGTGGCCCCACT 4062387 37 100.0 36 ..................................... TTACAAATGTCGCCATAATAGTCGCTGAACTCGCAC 4062314 37 100.0 36 ..................................... TATCCTGGGCGACTACACCTGCCACGAAACTCCGGC 4062241 37 100.0 37 ..................................... AATATTTATTAGGTGTATTAGTTTTTGGGATTTCAGA 4062167 37 100.0 36 ..................................... CACAACTTCGCCGTACTGGCGACCTGAGCCAGATAA 4062094 37 100.0 37 ..................................... ATTAGTTGTATTCGACGTGTAGAGCCCCTTCGGGTCT 4062020 37 100.0 34 ..................................... TACCCGCATGATAATTTCCAGTAATGGTATTATT 4061949 37 100.0 35 ..................................... CACTAACAGCAACCGAAACCGCTATTCCCGGTAGT 4061877 37 100.0 36 ..................................... TGGATCAGGTCATCAATTTCAGGGTCCGTAATGTCG 4061804 37 100.0 35 ..................................... TGGAAAAATACCAAATGCTATTATTCAAGAGTTTG 4061732 37 100.0 35 ..................................... AATTTCTGAGCTGCTCGTCTCTTGGCGTGCTTTTC 4061660 37 100.0 34 ..................................... TATCTGCTTGTCCAGATTCACAAGGGCAAAATAC 4061589 37 100.0 36 ..................................... AAAATGTTACCAGAGGCCGCGCTCGGTCGCTGTTGA 4061516 37 100.0 35 ..................................... CTAAAAAATTTAGGGAGGAAAGTCTCCACTAAGTT 4061444 37 100.0 38 ..................................... TGCAGAACTTCACGGTGTCCATAGTCCGTAAAAGGTTT 4061369 37 100.0 37 ..................................... TTGAAAGTATTCGCAATATAAACATGCACAATAGGTA 4061295 37 100.0 36 ..................................... GTATAATCAGGAGCATACTTAAACGTTAATTTCATA 4061222 37 100.0 37 ..................................... ATTTCCACGTCTGCGCCTAATGTCGTGTCGTCCCATA 4061148 37 100.0 37 ..................................... AAGAGGGTGTCGATTATTTCCTCTTGCATTGTCTTCT 4061074 37 100.0 35 ..................................... CTTTTGGGACTCCTGCAACACTCACCTGCAAATAT 4061002 37 100.0 37 ..................................... ATTTTACTAAGTGCGCAAAAGCGTTTTTTAGATCATT 4060928 37 100.0 35 ..................................... TAGACCCCGCAAGGCCCAGAAGTGCGGTCCTAACA 4060856 37 100.0 36 ..................................... TTTCATAAATTCGAGTCACATAAATATCCATGATTG 4060783 37 100.0 35 ..................................... TGCGGCTTTATCTATTCAGGAATCTGAACTAAAAG 4060711 37 100.0 35 ..................................... TGGGAGGATGATAAAATCAACTCTCAACCCTAATA 4060639 37 100.0 36 ..................................... ATACTTTCATCAGTCAATATTTCATTTTCGTATAGA 4060566 37 100.0 35 ..................................... AATGGATTTGGAGACCGTTCTCTACTTGGACTTCT 4060494 37 91.9 0 ......A...........C................G. | ========== ====== ====== ====== ===================================== ======================================= ================== 55 37 99.9 36 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AAGATCCATTAAAACAAGGATTGAAACATATCGGCTCTATACTCTGACACAGCGAAAACAGCA # Right flank : TTTTGTTATTGATACCGAAACCGCCTTTTCCGTTGAATTCGCGAGCATGGTCCATTAAGAGCCTATCCGAAAAGTGTTGTGACCTGTGTAGATGTCCGACACTAATATTTATCGAAACTTCTATAACAGCCAATAGTATATCCTAAGTGTGGTAAAGAGTCTTAGAGACATCCGGAAGAGAAAAGGGGAGAGCTGAAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAACATCCTGAAAGGAAGTGTGAAGATACAAGACATACAGGAAGAGACCTAAACTGTATTATAGCAGAATAAGAAAAGAACTTCTGGAAGGAGGAATAAAAACCATGACAGAAATGACTCTAATAGAAGCACTGAAAAAACTTGCATTAATCACGAAAAAAGGACTGGATGAACTGATTCATATCCCGGATAATGCAAGTGGACCTATTACAATTGGTGAGGCAATTAAAGAAATACAAGATCACGATTCTGACATTTCTGAAACT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //