Array 1 96679-98297 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSUN010000011.1 Streptococcus thermophilus strain 13497 202-13497-11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 96679 36 100.0 30 .................................... ACCAATAGACCACGGAAACAATAAACTAAA 96745 36 100.0 30 .................................... GAATCATGATTGGTTTATCTGTGGGCTTCA 96811 36 100.0 30 .................................... AAAGAAATTAAAAAAACCTAGCGAAGCACT 96877 36 100.0 30 .................................... TTCGCATAAGACTTCTTCAAACCAAAACAT 96943 36 100.0 29 .................................... GTCCATAGGTATTTCCCTTTAATTAAAGT 97008 36 100.0 30 .................................... TAGAGATGACGACGGACTACCTGGCAAGAA 97074 36 100.0 30 .................................... TATCCCAGAGAATGGAAGAACAATTATAGA 97140 36 100.0 30 .................................... CTTCTTAAAATTGAATAATTCGAAGCACAT 97206 36 100.0 30 .................................... AGGTAACATTGGTTCAACAGCAGTCTAATT 97272 36 100.0 30 .................................... TCGTTACCTTGTCTTTGCAAATCACGCAAA 97338 36 100.0 30 .................................... AATGAAGAAGCCGATTCAAGCTCAAGGGTC 97404 36 100.0 30 .................................... TATTTCTGTCCGATACGAAGTATCAGGGAC 97470 36 100.0 30 .................................... TACGCCCGTTTGGATTGAACATGATAGAGC 97536 36 100.0 30 .................................... GAGCCTACTAATGATTACATTTTGAGGACG 97602 36 100.0 30 .................................... CCAAAGAATGGACCACCTTAATGAGAATAT 97668 36 100.0 30 .................................... TTTCAAAATCTTCGAATAGGCAGTCGAGCA 97734 36 100.0 30 .................................... AAAATGTACAAATTTTCATGCTAGGGAATA 97800 36 100.0 30 .................................... TACAGCTCTTGGTTTCGTCTATCCTTATGT 97866 36 100.0 30 .................................... CGCTAGGGTCTCTGGTGACGCTGAGGTCTC 97932 36 100.0 30 .................................... CCTGACGCATATGGAAATCCTAACGGTCAG 97998 36 100.0 30 .................................... AAAATCATCTAAATACATGTGTGTAACAAG 98064 36 100.0 30 .................................... AAGCACTGGACGACAAATAAATAATTGAAG 98130 36 100.0 30 .................................... GAACAAGAAACTTATGAAGTCGAAAACCGA 98196 36 100.0 30 .................................... CAACCCAGACATGAATGTCATTAGATATGT 98262 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CTTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAATCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 6117-4828 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSUN010000046.1 Streptococcus thermophilus strain 13497 202-13497-46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6116 36 100.0 30 .................................... AGAAACGAGAAAAAAGATAAAAAAATTTTA 6050 36 100.0 30 .................................... AACCATCATTTGATGCTGCCATGTAGTTAT 5984 36 100.0 30 .................................... AATAAGGAGGAAACCTCTGTTCTTTCAATC 5918 36 100.0 29 .................................... CTTGCAGAGATGCACATGCAGTTAAATAT 5853 36 100.0 30 .................................... CTTACTATGACATGTTCAAAAAGCAACTTC 5787 36 100.0 30 .................................... ACTGAATAGCCAGTTTCACTAGTGTTATCA 5721 36 100.0 30 .................................... CTATCATCCGTGATATATAATATACATATA 5655 36 100.0 30 .................................... AAATGTCTCTAGCAACGATATTAAGCTATA 5589 36 100.0 30 .................................... ATTCCAGTATTGAAAAGATTAGATGAAGTA 5523 36 100.0 30 .................................... CGTGTCGAATATGACGATAATGACGATGAC 5457 36 100.0 30 .................................... CTCCTCTTAAAAATTATAAAATTTCATAGT 5391 36 100.0 30 .................................... GAAGAGAAGCAAGAGCAAATTGAAAAGATT 5325 36 100.0 30 .................................... TCATATATCGTCATTTGTTCTACTTCATCA 5259 36 100.0 30 .................................... TAATCCAAAGAAACATAAATGCTAATGAGC 5193 36 100.0 30 .................................... TTCATTGTTTGTTTACTCCTAATTTTTCTA 5127 36 100.0 30 .................................... AATGTGCTTAACATTTCTGATTGCGCCTTC 5061 36 100.0 30 .................................... TGCTTTCGTCAAAGGTTGAGTTCGCAATGC 4995 36 100.0 30 .................................... AATAGATAGTGAAACTGATACCGTCACTGT 4929 36 100.0 30 .................................... TGGAAAATAGTTAAAATAAAGAAAGGAAGT 4863 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTGAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGAGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //