Array 1 40821-42477 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABKAX010000090.1 Vibrio parahaemolyticus strain CGVP18 Contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 40821 28 100.0 32 ............................ GTCATCAAAATTTATCGATAAATTAAAAGAGT 40881 28 100.0 32 ............................ TTAGCCTTAGCTTTAGCCTCTTGCTTGGCCTT 40941 28 100.0 33 ............................ GATGAGGAAATGGCTGAGTTAGCTCGAAACCTT 41002 28 100.0 32 ............................ GTCACAAGGGTGATTTCCACTCCTTGCTGATC 41062 28 100.0 33 ............................ ATCCGTCTAACGCTTCATCAAATGGGTGGTATT 41123 28 100.0 32 ............................ TTTTTTATTGGATTGAAGTTATGACATACCCA 41183 28 100.0 32 ............................ TCGTTGCGTGTGCCTGGTGTTTATAAGGTGCA 41243 28 100.0 32 ............................ GTCAAAACGCGATTGTGATGCAAAACCTCGAC 41303 28 100.0 33 ............................ TATGACAGCTCAATGAGTCTAGCTAAGAAGTTT 41364 28 100.0 32 ............................ CGTCAAGGCTGGTACTCAAACAGAAGCGAAAG 41424 28 100.0 33 ............................ ATACCGCAATATTCACATAAACGAAAGAAATCT 41485 28 100.0 32 ............................ TGGCAGCCTGATAAGAATTGGGCTTCTGGTGT 41545 28 100.0 33 ............................ CAAAGAAAACCGAACTAAAGCTAGCTGCTTCGC 41606 28 100.0 32 ............................ TCGGCGTTGACGCCTGCATTGCAGAAGTTGTT 41666 28 100.0 32 ............................ AACTAGCGCGCTACGCTTACTCAAATCAAAAA 41726 28 100.0 33 ............................ TGAGTTTCTGTTAATGAGCAAGAAACCTCCCTT 41787 28 100.0 33 ............................ AATAGATCGTCGCCGCTGAATTGTGCTAGGTCT 41848 28 100.0 32 ............................ AATAAACCCTGCCAGTGAGTCTGAGAGAGGCT 41908 28 100.0 32 ............................ TTTGCCTTGTGGCAAGTGCATTGGTTGTAAAA 41968 28 100.0 32 ............................ TTTGCGCTTCTTCTATGTACCAACTAGGTTTT 42028 28 100.0 32 ............................ TTAGACAGATTGTAAACCTTGTAGAAGTCATC 42088 28 100.0 32 ............................ TGCTGCCAACAGACTGGCTCGTCGTAACCTTG 42148 28 100.0 32 ............................ TACGTAATATATATTGAAAAATGCGGTAAAGC 42208 28 100.0 32 ............................ ATTAACTCACAGCTGCAACACCAATATTTTGA 42268 28 100.0 34 ............................ ATCATCGATTAGCGTTGAGCGCTATGTTGATTCA 42330 28 100.0 32 ............................ TGTCACAGCCACGAGCGCGTCCCTGGTTAACT 42390 28 96.4 32 .............C.............. TGCCCGTTGTTGTAGCGTTGACCATGCATCTA 42450 28 89.3 0 ..........A..C............G. | ========== ====== ====== ====== ============================ ================================== ================== 28 28 99.5 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GAACGATGTGACTTACGTTAGCTTTACTCGGAAACAAGTCAAATCCCCTGAGCGAATTGAACGCGATATGCAGAAAAAAGCGGAGCTTTGGGCGGCTAAATCTGGCAGGTCATTACAAGAGTGTCTTGTGGAGCTGGAAAAGACTAAGCCGACCTCGCTCTGTCCATTACCGTTTATCTATTTACATAGTCAACAAACCAAACAACGTTCACCGGATAAGAGCAGCAAATTTCCGTTGTTTATTGAAATGAAAGCTATCGGAGTAAAACAAGAAGGTTATTTCGACTGCTATGGGCTGAATTCCAAACTTAATCGGCAAGATTGCTTAGGGACTGTTCCGCAATTTTAATCAATAAAGGGTAAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAGGTATAAAATACAGCTAGTTACAATAGATAGATTTTGACAAGGTAAAAACATGATTTTTATCCTATCTATCTGTTGTAACTTTCTTTTATTGATTTATTCTGTT # Right flank : AGGCTGAAACGGTGTCCTCAAGTGTAAGCTTTATTCATATCGAGAGCTTTACGCTAAGTCGTAAAATTTAGATTTTATTCTCATAATATTTAGCCAAATAATTTCCTACATTAAGTTTAATAATAACCTTACTTAAAGGTATTTTTTATTTTCCATGTAGGGTAATAAATTTTTTGAAGTGTTACGAAAACCCATGATTATTCATATTTAATTTGCCAAAATTTAACAAAAAACAAAAGTCAAAAGATATGATTGCTTGGAAATAATCGGTGAATAATGCATAAATTAATATTATGTGTATTATTATTGAAATTAATGATTGAAGTGTATCGTCTCGCGATAAGGAATAAAATAGTGTTGTGTAATGTTTGTAAATTGAATTATGACAAAACTATAAGGCTAGGTAGGATAGCCATTTGTGATGAATGTTTGATTTCTGCAAGTGATTTTTATAAAGAGCATAGTCATGAAAAGTTTGAAATTATATTTCATGCAGATAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 251-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABKAX010000020.1 Vibrio parahaemolyticus strain CGVP18 Contig_95, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 250 28 100.0 32 ............................ TCGTTGCGTGTGCCTGGTGTTTATAAGGTGCA 190 28 96.4 33 .........................G.. CAAAGAAAACCGAACTAAAGCTAGCTGCTTCGC 129 28 100.0 32 ............................ TGCTGCCAACAGACTGGCTCGTCGTAACCTTG 69 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 99.1 33 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TACCC # Right flank : ATACGTAATATATATTGAAAAATGCGGTAAAGCGTTCACTGC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //