Array 1 289866-291481 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWQC01000001.1 Salmonella enterica subsp. enterica serovar Infantis strain CFSAN024778 CFSAN024778_contig0000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 289866 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 289928 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 289989 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 290050 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 290111 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 290172 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 290233 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 290294 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 290355 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 290416 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 290477 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 290538 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 290599 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 290660 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 290721 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 290782 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 290843 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 290904 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 290966 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 291027 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 291088 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 291149 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 291210 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 291271 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 291332 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 291393 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 291454 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 307764-309478 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWQC01000001.1 Salmonella enterica subsp. enterica serovar Infantis strain CFSAN024778 CFSAN024778_contig0000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 307764 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 307825 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 307886 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 307947 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 308009 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 308070 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 308131 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 308192 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 308253 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 308314 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 308375 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 308436 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 308497 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 308558 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 308619 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 308680 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 308741 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 308799 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 308860 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 308921 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 308982 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 309043 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 309104 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 309165 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 309226 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 309327 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 309388 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 309449 29 93.1 0 A...........T................ | A [309475] ========== ====== ====== ====== ============================= ======================================================================== ================== 28 29 98.4 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //