Array 1 2913898-2911916 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCLG01000003.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL03350 2014LSAL03350_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2913897 29 100.0 32 ............................. TTGAGGTTTGCGTTGAGCCTGTTCAGCATCAC 2913836 29 96.6 32 ............................C GCTGACTCTGCGGCGGATCTTCTCAACCAGTC 2913775 29 100.0 32 ............................. CCTAGAAAAGTTTGTTTAGGCAATCAAGCCCC 2913714 29 100.0 32 ............................. GTGTTAATTAATGAGTTTATTCCGTTTTAACA 2913653 29 100.0 32 ............................. AAATTTGGTTGACAGTAAAAGAGTGTGTCGGT 2913592 29 100.0 32 ............................. TCGGCTCGAGCACTTGCGACAACAAACACACG 2913531 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 2913470 29 96.6 32 ..C.......................... ATATGAGGCAGCTCGCTGGCGGCTGGGATGGT 2913409 29 100.0 32 ............................. CCGTTTTTTTCCCACAGTTTGCCACCGAGACG 2913348 29 100.0 32 ............................. TTAAGTCGCTCTTTGTACGCTACACCGGAGGC 2913287 29 100.0 32 ............................. AAATATCCAGAGCTGGGCTTGAGGCTGACGGT 2913226 29 100.0 32 ............................. TAATTGACATACATTCACCATATTAAGGAAGA 2913165 29 100.0 32 ............................. CCATGCGCGGCGGCGCTTGCCCAGCTCAGAAA 2913104 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 2913043 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 2912982 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 2912921 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 2912860 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 2912799 29 100.0 32 ............................. GACCTATCAGCCTAATTTCCGGGGCAAGAGCT 2912738 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 2912677 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 2912616 29 100.0 32 ............................. GCGTTTATTTTTGATTTGTTATTTGGACGTTA 2912555 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 2912494 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 2912433 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 2912372 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 2912311 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 2912250 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 2912189 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 2912128 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 2912067 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 2912006 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 2911945 29 96.6 0 A............................ | A [2911918] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTCAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2931834-2930156 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCLG01000003.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL03350 2014LSAL03350_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2931833 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 2931772 29 100.0 32 ............................. GCTTCTGATTGCATTAGCTCCAAATCAGTACC 2931711 29 100.0 32 ............................. GCGTCAGGCGTGGTGGCCGTGATTACGGACGA 2931650 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 2931589 29 100.0 32 ............................. GGCTAACCCATGAACACTATTACCAAATTCAC 2931528 29 100.0 32 ............................. GTTGCCGCCCTTACTGCGCGAGGCGTTGGAAC 2931467 29 100.0 32 ............................. GAGGGGCCGTCTGCCGCATATCAAACGCTATC 2931406 29 100.0 32 ............................. CAACACGAAAGAAAAAATACTCAATATTATTG 2931345 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 2931284 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 2931223 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 2931162 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 2931101 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 2931039 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 2930978 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 2930917 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 2930856 29 100.0 32 ............................. CTTGCAGCCGAATACGGTATAGAGTGGGACGG 2930795 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 2930733 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 2930672 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 2930611 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 2930549 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 2930488 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 2930427 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 2930366 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 2930305 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 2930244 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 2930183 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //