Array 1 2759784-2759425 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIOI01000001.1 Pseudoclostridium thermosuccinogenes strain DSM 5809 scaffold1_size3002637_cov202.5430, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2759783 30 100.0 37 .............................. ATTCTTTCTTATAGGGCTTTAGTATTTCAATGAGTTT 2759716 30 100.0 35 .............................. ATTGAAGATAATAAAATAATTTTTAGGAGGTATAA 2759651 30 100.0 35 .............................. CGTTTAAAAGAAAGTCTTGAAAAATTATCTCAATT 2759586 30 100.0 36 .............................. TTGGAAGTAAGGGAAAGGATCGCAGAGATAAAAAGC 2759520 30 93.3 36 .........GA................... TCTATGTATCTAAAGTCTTTATCCCTACACACAAAT 2759454 30 76.7 0 .........GA....TA..........GCT | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 95.0 36 GTTTTAATCTTACCAAGTTGGAATTGAAAC # Left flank : AAATGGGGTATAGATAGGGTTAAGCAACATTATGACTGGTCAGGCAAAAACTGTCCTAGGATATTAAGAGATACAGGGAGATGGCTTGAATTTATTAAAAATGTAGAAAATGAATTGAATAGGTTAAATAATCCTACACACTGGGCTGAAAAATACTGGAACTATTTAAATGATATTGGTGTAAAAATATATGATAAAAGATATGATGATGCTATGACTAGAGGAGAGGTATTTGCACTACTTGCAAGGATAAAAGGATTTAAGGAATAATGCTTGCCCCTGGGAAACTGGGGGCTTTATTTTTTACTTGCCAATTCTCACCTTACTTTCAATTCATATTAAAATTTTATATTTAAAATTCATGCAAAATATGGTATAATTGTAACCATAGAGGAAATAAAATCATGAGGGTACAGTGTTTTTTGCACGACTGGAGGTTCATTGCAAAAGTAAGTGTTTTCGACACAGGAATGCCTTGATATATGTGGATTCCCGCCGGT # Right flank : TGAAAAATAGCTCTTTTATTTTATGTTTGTCAATACCCACTTTGTCATGTCTTTATAAAATATTAGATCACATTCCCGGATAGCATCATTTACGATGATTTTGCAACGATATCTTTTTATGTTTTTCTGTTGTGTCTCTGTTAATTCTACAAAGGACTTTATCGTTAAAACAATAGGTTTATTATCCTCATAAATCCTCATTTTAAGTGGTATAGTTTTACCATTTTCTTGATGATAGGCTATTATTTCACATGATTTCATATAATCACTCCGAACATATGTTTGTATATTATTATAGTACATATATTCTAAATTGTAAACGGGTGCTCGTTTAAGTACCTTTTTTTATTTTGTGAAATAGGACACTTAATTAAAATCATAATATTGTAGTAATAGCAAGTTGTGAGGTTACTTATATGAAATGTAAAAAATGTAATAGTAACTTATTCATTAGTTATGATGAAAGCAGCGACAATATAATTCTAAAGTGTAATTTATGC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:0, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCTTACCAAGTTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 377301-378052 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIOI01000002.1 Pseudoclostridium thermosuccinogenes strain DSM 5809 scaffold2_size1143849_cov234.7525, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 377301 30 100.0 36 .............................. ACCAAGGCACATCTCCGGGAACGGATCACAGATCCG 377367 30 100.0 37 .............................. TTTCTTTGTGCTGGTCTAAAAACCAATCAGCAGACAT 377434 30 100.0 36 .............................. ACAAAAATTGTTATATTTTTTGTCTCTTTATTTCTA 377500 30 100.0 36 .............................. TTAAAAAGCATGTTTTTAAGAGTACTTTGACTATCT 377566 30 100.0 35 .............................. ATCGTACTATTTTTAAATTTCATCATTAGCAATTC 377631 30 100.0 35 .............................. TATGGAAATGTACGCAATAAACGCCGAGAAAAGAG 377696 30 100.0 36 .............................. CGACAAATATTATAGAGAAGAATTATATTATCCTAC 377762 30 100.0 35 .............................. TTTTATGATAGCGTAAACGGAAGCAAAATATTGCA 377827 30 100.0 35 .............................. AAAATGTAAAAAAGAGAATAACAGCAATAACAGAA 377892 30 100.0 35 .............................. TTTTTCTCCCTTCTGATAAAGTCTAACGCAATTGA 377957 30 96.7 36 ......................T....... TAGTAAGATATAACTTTCTTATATCCCGGCAGCTTA 378023 30 90.0 0 ...........................GCT | ========== ====== ====== ====== ============================== ===================================== ================== 12 30 98.9 36 GTTTTAATCGTACCATATTGGAATTGAAAC # Left flank : TGCGGGAATGGATGGAGCAATCCTTGATCCCCTGGACAAAAAGCTCATGTCCTTTGTATATGCAGGAGAGGCTCTGCTGGGTATAGACGAATTTTGCATGAATTATCTCACCAAGTTCAGAGAAGGAGCCCTCGAGGTCTAGGCGCTGGTGGGAAGACCAGTTTCTTAGGTTTTATCATGGAGTTATTCTTTGATTTCGATGTTTTTCATCGAGCTTAATCAATATCAAAGGATAAGCTGATTTGAGTTTAATATTTCAAGCACAGAAGGCTGCCGAAAGGCGGCCTTTTTTTCGCATATCCTTGGTTCTTTGAATTTATATGAGCATCTGATAAGGCAATTAATATTTTATTTGAGCCTCATGCAAAATGTGGTACAATTGTAATTGTAGAGGAAATAAAATCATGAAGGTACAGTGTTTTTTGCACGACCGGAGGTTTACTGCAAAAATGAGTGCTTTCGACGCCGGAATGCCTTGAAATATGCGTATTTCTGTCGGT # Right flank : TTAATTCAATCCAAATTAATATATCTACAGCAGTGGTTATCTTGGAAAAAGATGCGCTGAAAGAATAGCATCTCTTTATTGTTCTCATTACTGAATAATATAGTAAATTAATGCAATTTTGTTGCATAAACTGTGCTGGGTTTGTCCATAATCTTCCAGGAGGGATTTTATGGATCTTTTTGGTAATAGCGTAAAAATAACCGGAGTGGAAATTAATTATTTATATGTTTGTCCAAGAAAGCTATGGTTTTTTACCCATGGTATATCCATGGAGCAGAACTCTGTGAGAGTGGAAATTGGTAAGGAAACCCATGATAATAGTCTGAACAGAAAAAGGACAGAAATCCTAATAGATAACACAATAAGGCTTGATTATGTGGACAAAGAACTTGCGGTTCATGAAATCAAACTGACAAAAGCAATGGATATGGCGTCCAAGTATCAGCTTCTTTACTATCTGTATTATCTGAATAAAAAAGGAATCGACTGTAAAAAAGGAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGTACCATATTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 2 380143-381034 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIOI01000002.1 Pseudoclostridium thermosuccinogenes strain DSM 5809 scaffold2_size1143849_cov234.7525, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 380143 30 100.0 36 .............................. GCTAGTCTTGGTGTGTGGGTTATTGGCCTTGGAATC 380209 30 100.0 37 .............................. TTCTTTTTACTGTTCATACTCTCACCCCTCTATTTGC 380276 30 100.0 37 .............................. TTTCTAAATGTATAATCTTCTGTATATAAGTACAAAG 380343 30 100.0 37 .............................. TTGAGACTAAATTTATTAGACCGCTTATAGAATCAGC 380410 30 100.0 36 .............................. CAGTTAAAAGAGGGTTCTGTAGTAACTGAATATGAA 380476 30 100.0 36 .............................. GTTAGTTCGCAATTATCTTCTGCATGAGGTATCATC 380542 30 100.0 37 .............................. GTTGAACAGTTTATAACAGCATATAGACAAGCAAAAG 380609 30 100.0 36 .............................. TTTGTTGAGATTAAGCCTATCAAAAAGCCTGAAAAG 380675 30 100.0 35 .............................. AAGCCAGTCCCAAGCCTGGATAAATGCAGAGGGTA 380740 30 86.7 37 .C.......T.....AG............. CAGAAAAGAAAGTATAAAACAGAAAATTTATATGAGT 380807 30 86.7 36 .C.......A.....GG............. AACAATCTCCGGAACTCTTCCCTGCTGTGCGATTCT 380873 30 93.3 36 ...............AG............. GTTACTCTGAGAGATTTAGTGAAAGATGGCCTTACA 380939 30 96.7 36 ................G............. GGTTCATGGTGGATACATGTTTATCAGAGAGATAGA 381005 30 90.0 0 .C.......T................C... | ========== ====== ====== ====== ============================== ===================================== ================== 14 30 96.7 36 GTTTTAATCGTACCATATTGGAATTGAAAC # Left flank : ATAGGACGCTTATCAGACTGGAACTTTATAAGCTTATAAAACATCTGACCGGGGATCAGAGTTATGAAGGATTTAAAATGTGGTGGTAAGATATGTATGCATTGATTGTCTATGATGTTAAAGAGAAACGAGTTGCGAAAGTATTGAAATTCTTACGTTCCTACCTCAATTGGATACAGAATTCGGTATTTGAAGGGGAAGTAACAGAAGCTCAAATGCTGAAGATAAAAAATCGCCTTAGGGAGATTATCGATGAAGATGAGGATTCGGTGATAATTTTCACATCTAGGGAAAAAAGGTGGCTTTCAAAAAGCATTATGGGGAGAGAAAAGAACTCGACTGACAATTTTATTTAAATACTGTGAAGAATATGGTAAAATTGTAATCTGAGAGGAAATAAAATCATGAGGGTAAGGTGTTTTTTGCATGACTGGAGGTTCATTGCAAAAATGAGTGTTTTCGACGCCGGAATGCCTTGAAATATGCGTATTTCTGTCGGT # Right flank : CAAAAAATAAGCCCGGATAACCCGGGCTATTTTTACAAAGGGTCAATTGAAAAGGTAATTTCCACTTTGCAAAAGTAAATTCCATGGATGCTGTTATCATTGAGAAAAATAGTAATTCAGCGGGTTTTGGATTAGTTTATTTAGGCAAATTTTAATGCTTTTCAATCAATAATAGGTTAAAATATGAAGTAGAGGAACAAAGCCAGCCCTTTTTTGGGTATATCAAACTAGAGGTGTGAAGATTAACTAACTTTTTGCAAGAGTAATTTCCACCCTGTTTGTAAATGCTTATAGAGTTGTGGCTGGTGGTGCCTCTGGTTATTTAATATTTATTTCTTAAGAAGGGATGAATGCAGGGTGACATTATCTGTCGGGATAAGTTCTACATTCATCCTTCTTAATATTTCTTCCCCGTAGAGCAATCCAAAAGCCCAATAAGGGGTTTTATCCCCGAGATTCAGTCGACTGTACGAGTTGATATGGTTCATCATAAGAGTTAT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGTACCATATTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 3 394524-394882 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIOI01000002.1 Pseudoclostridium thermosuccinogenes strain DSM 5809 scaffold2_size1143849_cov234.7525, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 394524 30 100.0 35 .............................. ATCGAAATTAATTCATCCTCTGCACACTCAGGACT 394589 30 100.0 35 .............................. TTTTCTTGTCGATAAAGATAATTTATCTAAAACAT 394654 30 100.0 37 .............................. ATTATTAATATTTTTCAAATAAACTATTTTCAATTGA 394721 30 100.0 36 .............................. GTAAGGCATTTTAACATTATATCTTTTTAATATATC 394787 30 100.0 36 .............................. GGAGTGAAACGGTATAAGTTTTCGCAGTAGGCAGTA 394853 30 86.7 0 ..........................CGTT | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 97.8 36 GTTTTAATCGTACCAAGTTGGAATTGAAAG # Left flank : ACGATCATGTGGTAAGGCTTATTGTTGAGGAAGAATTGAACTGGTAGTTAATATGCCCTGTCCGTATACATCTGCGGACAGGGCTAATGAGCAAAACTAGCGGTCAAAAAGAATGAGCAGATTGCGGTCAAAGAGGCCGAACAGCGACACCATATAGAATTTTACTGAAAATTTCTTTATAACAAGATATATACCAATGGAAAACACATGGAAAGTACAGGTATTCATTGTATGAATTATATATAATTATCTACAACATCCTGATAAAGACTCAGTGATTATTTTCGTGTTCCGTAAAAGGAATTGCTTTGAAATGTATTAAGGGGATAGAAAAACACAACTGACATTTTATTTAAACCTCATGAAGAATATGGTACAATTACTATTATAGAGGAAATAAAATCATGAAGGTACAGTGTTTTTTACACGACTGGAGGTTCACTGCAAAAATAAGTGTTTTCGACGCCGAAATGCCTTGATATATGTGGATTCCCGCCGGT # Right flank : TCGATATGGTCCAACCAGTTTATGGAGATAGGATATCCTACAGCAATGGCTGTTTTTGAAATAGATTTACTGAGAGTTCGGTAGGTCTTTATTCGCTCGTATATAGTTGCATTACTGATATGGTAGCAATGCAAAATAACCCAATCGGACTCAGTTAGAATTTTTATGTCTCGGAAAAAAGATGGCTTTCAAAAGGCGTTATAGGCAGAGAAAAAATCCCAACTGATAACTTTATTCAAAACTTATGAAGAATATGGTACAATTGCTATTATAGAGGGAATGAAATCATGAAGGTACAGTGTTTTTTGCACGACTGGAGGTTCATTGCAAAAATAAGTGTTTTCGACACCGGAATGCCTTGAAATATGCGCATTTCCGTCGGTGCTTTAATCGTACCATGTTGGAATTGAAACAAAACAAAAGAGGACTTTGAGTTTAAAGCTAACTACGCTTTAATCGTGCCATATTGGAATTGAAACATCATAGTATCTGTTGAAACG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGTACCAAGTTGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //