Array 1 108964-112773 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCEV01000009.1 Streptococcus ruminantium strain MO498, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 108964 36 100.0 30 .................................... TCATCGCCCGTCGCAATCGAAAGTGTACTT 109030 36 100.0 30 .................................... TGAGTAAATTTGTTCATTCGGACTGCATGG 109096 36 100.0 29 .................................... TCATTCCGATCGCCAGCAATGGTCAATCT 109161 36 100.0 30 .................................... CTGAAGAATGCGACATCGTTAGAAGACTTC 109227 36 100.0 30 .................................... CTGTGACTGTTCTATGTACTGTGAACGTGC 109293 36 100.0 30 .................................... TGAATTTTTCCAATAACAAGAGAGCCTACG 109359 36 100.0 29 .................................... TTGTCAAACTCTCAATCCCATCATCAATT 109424 36 100.0 30 .................................... TGATAAGCTCGTACCTACGACGCAAAGCCG 109490 36 100.0 30 .................................... ATTTTGGAGCTACTAAAGATTGGCTCCCTA 109556 36 83.3 37 .C...............GC....A...T.......T GCTTGACAATATGATTAGATAATGATATTGTTCTTGT 109629 36 75.0 30 ...C...A.T...T.G.....G.....AG....G.. AACCAAAGCTAACTACAAACGTGAATTTTA GA [109636] 109697 36 100.0 29 .................................... TTTTTCAATCCAAGGTTTGTATTGAACTA 109762 36 100.0 30 .................................... ACAAGGCTTGCCCTAATACAGCGTGACTAT 109828 36 100.0 30 .................................... AGGGTGCATTGTCAATTATAAGCCAACACC 109894 36 100.0 30 .................................... CTATGTTGTTGATTTTAACCAAGCGCTGTT 109960 36 100.0 30 .................................... CTATGTTGTTGATTTTAACCAAGCGCTGTT 110026 36 100.0 30 .................................... ATGTGCCAGTGGCTTTATTTACTACTTCCA 110092 36 97.2 30 ...........................T........ AGGTCAACTGTTACTCTGACATCTGCCATT 110158 36 100.0 30 .................................... GCAACTCCTTATCAAATTTCTCTTTTAATT 110224 36 100.0 30 .................................... TCTAAAACATTTCTAAATTTTTCAACTTTC 110290 36 100.0 30 .................................... ACATCGCCTTTCCTCTCTACGCCATAGAGT 110356 36 100.0 30 .................................... GAGGAGTGGTTAAATTCCTTGAAGGTTCTT 110422 36 100.0 30 .................................... GCCTTTTCATTATACCAATAACACGTTCAG 110488 36 100.0 30 .................................... AATTAAGGTCTGGGAAAACTTGTAAGCCTT 110554 36 100.0 30 .................................... TTAAAATGAAAAAACGTGACATTATCAAAA 110620 36 100.0 30 .................................... AAAGGCGCAGGTATGACACCTGAAATTAAA 110686 36 100.0 30 .................................... TCGGCATACTTTGCTCCTGAACTATGCTAA 110752 36 100.0 30 .................................... TATAAGAAGAATGGTCAAGAAGACGAGATG 110818 36 100.0 30 .................................... TAACTTCTGTTGCACTCATGGAAAATTCCT 110884 36 100.0 30 .................................... TCGCTCACCTAAATACCTCCAGCTACTCCG 110950 36 100.0 30 .................................... ATGCTCTTAAAAATTGCTGATTGGGAGTAG 111016 36 100.0 29 .................................... CAACCTCGTCCCTTCCCATATCTAACCCA 111081 36 100.0 30 .................................... CATACTAACTTGCCAGGAGATGTCATCCTC 111147 36 100.0 30 .................................... GTGGTTTCATTGTTTTGGCATACATTAATA 111213 36 100.0 30 .................................... TTTCAACTCCTTGTCAGTATTTTTTGAGGA 111279 36 100.0 30 .................................... AAACGACTGAACGAAAAACGGATACATCCA 111345 36 100.0 30 .................................... TTGTGTAAGTCTCCCAAGCTCCCATAATGA 111411 36 100.0 30 .................................... AATTTGCTGATTTAACAACTGATGGCTATG 111477 36 100.0 30 .................................... GACCGTCTTTGTTCAATACTTCTTTGTGTA 111543 36 100.0 30 .................................... GAAAAATTCAATTTTTAAGTATTGGTGACC 111609 36 100.0 30 .................................... CAAGTCTTCCAATCCATTCTTACTGTGCCA 111675 36 100.0 29 .................................... TGATTTCAACTACTCTAGCGCCTTTAGAA 111740 36 100.0 30 .................................... GGTAAGATTATTTCCTCAAAATAGGGGAAT 111806 36 100.0 30 .................................... TAGCTGGTTCCGGACTGTCGTTAACTGTTG 111872 36 100.0 30 .................................... TATTGTCTTGTATAGCCACTGCATTACCCA 111938 36 100.0 30 .................................... TCCACCACGAAATTCAAAGACAAGTGGATG 112004 36 97.2 30 ...................C................ TAGATTTAATCTTACCCAATACAAAGTCTA 112070 36 100.0 30 .................................... ATGATATACTTAATCCATAAAAGAATTAAA 112136 36 100.0 30 .................................... AAGCTATCTTAGATGGTACAGGTCAAGCAG 112202 36 100.0 29 .................................... AACTCGGATGCGAGATGGGTCCATACTTT 112267 36 100.0 30 .................................... CTAGGTGCTGTAATTGATAAAAGTGAACTA 112333 36 86.1 37 .................GC....A...T.......T GCTTGACAATATGATTAGATAATGATATTGTTCTTGT 112406 36 75.0 30 ...C...A.T...T.G.....G.....AG....G.. AACCAAAGCTAACTACAAACGTGAATTTTA GG [112412] 112474 36 100.0 30 .................................... CGTTGTCAGCTGTAATCGTGATATTCGATT 112540 36 100.0 30 .................................... CCTGCGCTTTATTGTTTGTGGTAGTTGCTT 112606 36 100.0 30 .................................... ATCCTTCTAAGTTTTTACCAGCACGGATTG 112672 36 100.0 30 .................................... AATTTTGCGGTAAGGTCAAGAAAAAAGTCA 112738 36 86.1 0 ...............................CCCCT | ========== ====== ====== ====== ==================================== ===================================== ================== 58 36 98.3 30 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : AAATATGGATGATTATTTGGGCTATTCTTCTTTTACAAGAATCGCTCAACACTTAGAAGTGCTCTGTCGAAAATATCCATATTTTCATGTTATGATATTTCCTTCTCAAGAGGGATATCTATACTTAAATGAAAGCACGATTGAAACGGTGAATATTTTAGCAGATCAAATTGAGCATTATCCAGCACTTGAATTTCTATATGAGCGCTATAAGGTCTCTTATCCTTCCAATAATCCATTAGACAAACAAGAGTTTTTGACTTCTTTGAGAAAAGTTAGCTCCTATTTGTTTTGCTCTGAGATAAGCGAAGTGGTTAGTCTGTCATATAGAGATCTACTGACGTTAAAGATCATAAATACCCTTTATCAGTATGATACAAAGCCAAAATTTGAGAAATATTCCTTGTCTGTTTTGGAAGAAAATTATCTTAATACCTAAAGTTGACAAGTATTTTGATAGGGATTATACTTGGAGTAAGAGAGTATAAAAATCATTTGAG # Right flank : TCTAAGGTCATTGATTTCTTGACCTTGTTTTTGTCTTCTTAAAATGAAGACAAACTTTTTGTTTTGCCCTGAAATGTAATTTTAAAAGGCTTTTGAATGAAAGAAGAAGCGATTTATTTCTCCGTTGAAGATCGCTTTTTTAATGTCGCGATTTCTTTGAAACAACAACTTTAAATTTTTAGTGATCATGTTTTGCTTTTTCTATGATAAAGTAATGAAACTGTTATGCCGTTGTAGTGAGTGTTTTTCAAAATTCTTAGAAAATGATAGAATGTTACCATGACTATATAGATAATAAAATACTTTTGTCTCATAAGGAAAACTATAACAACTTCTCAATACTTTGCGGTCTTTTCCAGTTGTTCTCAGAAAATGCAATAAGTGCCTATAGGATGAACGCTTCTATTTGGCTTATCACTATAGAAAGAATATCATGATCTTATTCGTAGTGTAAAAAAAGAAGTAAACTTTTCTATCTTGTAATGTAAGATAATTTGTCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [18-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //